Wall clock time and date at job start Sat Apr 11 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.47458 * 2 1 4 4 C 1.34230 * 117.00213 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99812 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99734 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47248 * 60.00504 * 6 4 3 8 8 C 1.52990 * 109.47060 * 299.99594 * 6 4 3 9 9 C 1.50704 * 109.47099 * 175.00475 * 8 6 4 10 10 C 1.38228 * 119.62026 * 125.00195 * 9 8 6 11 11 C 1.38629 * 119.15983 * 179.97438 * 10 9 8 12 12 C 1.38674 * 118.42173 * 359.97438 * 11 10 9 13 13 C 1.38178 * 119.16023 * 0.02562 * 12 11 10 14 14 N 1.31851 * 119.61687 * 304.72623 * 9 8 6 15 15 N 1.46499 * 109.46679 * 180.02562 * 6 4 3 16 16 C 1.38099 * 119.99996 * 275.00103 * 15 6 4 17 17 N 1.32261 * 119.90608 * 359.97438 * 16 15 6 18 18 C 1.31961 * 121.86705 * 179.97438 * 17 16 15 19 19 C 1.38686 * 121.45092 * 359.97438 * 18 17 16 20 20 C 1.38009 * 119.61964 * 0.28101 * 19 18 17 21 21 C 1.40995 * 118.28582 * 359.46452 * 20 19 18 22 22 C 1.41018 * 120.71011 * 180.23337 * 21 20 19 23 23 H 1.08002 * 120.00623 * 205.27212 * 22 21 20 24 24 C 1.39951 * 119.99497 * 25.28123 * 22 21 20 25 25 N 1.30864 * 120.00367 * 14.11638 * 24 22 21 26 26 Si 1.86803 * 119.99526 * 194.11772 * 24 22 21 27 27 H 1.48494 * 109.46896 * 90.00194 * 26 24 22 28 28 H 1.48506 * 109.46586 * 209.99829 * 26 24 22 29 29 H 1.48500 * 109.47301 * 329.99610 * 26 24 22 30 30 H 1.09000 * 109.47379 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47135 * 299.99919 * 1 2 3 32 32 H 1.09005 * 109.47255 * 59.99401 * 1 2 3 33 33 H 1.09007 * 109.47135 * 240.00081 * 2 1 3 34 34 H 1.09005 * 109.47255 * 120.00599 * 2 1 3 35 35 H 1.09003 * 109.47677 * 295.00580 * 8 6 4 36 36 H 1.09005 * 109.47031 * 55.00562 * 8 6 4 37 37 H 1.08001 * 120.41751 * 359.95497 * 10 9 8 38 38 H 1.07999 * 120.78437 * 180.02562 * 11 10 9 39 39 H 1.07995 * 120.41501 * 180.02562 * 12 11 10 40 40 H 1.08003 * 119.61349 * 179.97438 * 13 12 11 41 41 H 0.96998 * 120.00254 * 94.99767 * 15 6 4 42 42 H 1.08005 * 119.27735 * 180.02562 * 18 17 16 43 43 H 1.07998 * 120.18994 * 180.02562 * 19 18 17 44 44 H 1.08004 * 120.85128 * 179.69704 * 20 19 18 45 45 H 0.96996 * 120.00253 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5845 3.4692 0.8912 8 6 3.4497 3.6846 -1.2480 9 6 3.9239 5.1138 -1.1871 10 6 4.6661 5.6324 -2.2316 11 6 5.0969 6.9484 -2.1659 12 6 4.7632 7.6971 -1.0473 13 6 4.0180 7.1106 -0.0423 14 7 3.6213 5.8567 -0.1407 15 7 5.3837 2.8606 0.0010 16 6 6.0679 2.7198 1.1924 17 7 5.4005 2.6549 2.3324 18 6 6.0146 2.5200 3.4925 19 6 7.3967 2.4386 3.5745 20 6 8.1534 2.5052 2.4223 21 6 7.4830 2.6437 1.1897 22 6 8.2055 2.7119 -0.0194 23 1 7.7766 3.2077 -0.8777 24 6 9.4784 2.1368 -0.1072 25 7 9.8870 1.3073 0.8188 26 14 10.5941 2.5535 -1.5463 27 1 11.4241 3.7359 -1.2029 28 1 11.4779 1.3963 -1.8385 29 1 9.7673 2.8591 -2.7414 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8600 3.2032 -2.1358 36 1 2.3608 3.6647 -1.2943 37 1 4.9076 5.0200 -3.0878 38 1 5.6780 7.3805 -2.9672 39 1 5.0816 8.7256 -0.9629 40 1 3.7543 7.6868 0.8322 41 1 5.8719 2.9087 -0.8358 42 1 5.4281 2.4710 4.3981 43 1 7.8782 2.3280 4.5349 44 1 9.2312 2.4488 2.4635 45 1 10.7690 0.9085 0.7577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170840448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:40 Heat of formation + Delta-G solvation = -17.821623 kcal Electronic energy + Delta-G solvation = -29813.361688 eV Core-core repulsion = 25795.676540 eV Total energy + Delta-G solvation = -4017.685148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.36123 -39.79879 -38.40090 -36.39545 -35.25918 -33.92825 -32.65863 -32.16656 -31.59520 -30.36134 -29.85611 -27.66380 -25.35670 -25.19873 -23.44216 -22.95374 -21.78929 -21.45541 -20.93442 -19.86156 -17.39925 -17.21019 -16.95193 -16.57424 -16.22799 -16.07603 -16.03110 -15.27211 -15.21120 -14.67538 -14.17877 -13.80664 -13.79629 -13.46419 -13.32839 -13.14890 -12.95161 -12.78181 -12.70052 -12.35133 -12.29529 -11.80688 -11.69977 -11.61123 -11.45560 -11.39466 -11.29717 -11.14888 -10.88668 -10.52913 -10.25005 -10.10220 -9.75327 -9.74460 -9.30591 -9.27605 -9.07071 -8.83731 -8.06444 -7.85846 -6.77678 -6.54343 -4.22090 1.20646 1.40262 2.73875 2.77282 2.92622 3.06528 3.08467 3.20909 3.31516 3.90787 3.93299 4.21460 4.42686 4.67761 4.73987 4.92358 5.00012 5.03610 5.08547 5.17503 5.23439 5.28392 5.37500 5.42282 5.60474 5.75090 5.77261 5.81189 5.82636 5.90945 5.98562 6.08621 6.13570 6.25655 6.27170 6.48372 6.78292 6.78415 6.85958 6.89165 7.14697 7.19507 7.64688 7.83299 8.01892 8.13578 8.21390 8.35059 8.45842 8.66256 8.81725 8.98998 9.78907 10.24652 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007335 B = 0.004929 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3816.165064 B = 5678.751014 C = 7414.413282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.366 6.366 4 C 0.441 3.559 5 O -0.487 6.487 6 C 0.191 3.809 7 H 0.130 0.870 8 C -0.074 4.074 9 C 0.145 3.855 10 C -0.167 4.167 11 C -0.072 4.072 12 C -0.181 4.181 13 C 0.106 3.894 14 N -0.471 5.471 15 N -0.700 5.700 16 C 0.308 3.692 17 N -0.528 5.528 18 C 0.004 3.996 19 C -0.189 4.189 20 C -0.124 4.124 21 C 0.038 3.962 22 C -0.453 4.453 23 H 0.073 0.927 24 C 0.075 3.925 25 N -0.799 5.799 26 Si 0.908 3.092 27 H -0.269 1.269 28 H -0.279 1.279 29 H -0.264 1.264 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.153 0.847 41 H 0.406 0.594 42 H 0.117 0.883 43 H 0.094 0.906 44 H 0.127 0.873 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 6.889 -6.688 15.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.283 6.283 4 C 0.279 3.721 5 O -0.371 6.371 6 C 0.081 3.919 7 H 0.148 0.852 8 C -0.113 4.113 9 C 0.007 3.993 10 C -0.187 4.187 11 C -0.098 4.098 12 C -0.201 4.201 13 C -0.051 4.051 14 N -0.180 5.180 15 N -0.338 5.338 16 C 0.071 3.929 17 N -0.245 5.245 18 C -0.150 4.150 19 C -0.211 4.211 20 C -0.151 4.151 21 C 0.031 3.969 22 C -0.485 4.485 23 H 0.091 0.909 24 C -0.142 4.142 25 N -0.425 5.425 26 Si 0.733 3.267 27 H -0.195 1.195 28 H -0.204 1.204 29 H -0.188 1.188 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.170 0.830 41 H 0.243 0.757 42 H 0.134 0.866 43 H 0.112 0.888 44 H 0.145 0.855 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.944 6.080 -5.848 15.451 hybrid contribution 2.421 0.063 -1.446 2.820 sum -10.524 6.143 -7.294 14.202 Atomic orbital electron populations 1.21778 0.93105 1.02477 1.03298 1.22893 0.94884 0.81412 1.02260 1.86529 1.25627 1.31415 1.84726 1.25224 0.79966 0.94380 0.72487 1.90677 1.60180 1.42729 1.43527 1.20051 0.83586 0.87621 1.00682 0.85234 1.20787 1.02747 0.89846 0.97875 1.20881 0.93611 0.95200 0.89573 1.21947 0.99903 0.96464 1.00388 1.21517 0.96735 0.93907 0.97685 1.22086 1.01005 1.01407 0.95596 1.22690 0.93768 0.90934 0.97739 1.67408 1.20978 1.06089 1.23542 1.43450 1.01327 1.82421 1.06632 1.18298 0.88160 1.01342 0.85059 1.66461 1.41110 1.19049 0.97844 1.21326 0.91668 1.08694 0.93281 1.21421 0.95042 1.06737 0.97947 1.21403 0.99828 1.03417 0.90404 1.17868 0.89153 0.95327 0.94538 1.19108 0.99977 1.32078 0.97314 0.90935 1.25798 0.98264 0.92883 0.97241 1.69800 1.18934 1.20819 1.32956 0.86319 0.80043 0.78817 0.81537 1.19465 1.20388 1.18773 0.90741 0.91532 0.91715 0.91777 0.91589 0.89620 0.87708 0.84905 0.85088 0.85147 0.82975 0.75671 0.86551 0.88763 0.85489 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 37.16 0.38 -1.06 16 2 C 0.06 0.81 6.19 37.16 0.23 1.04 16 3 O -0.37 -5.91 10.03 -39.26 -0.39 -6.30 16 4 C 0.44 8.45 7.30 36.01 0.26 8.71 16 5 O -0.49 -11.22 16.10 -18.75 -0.30 -11.52 16 6 C 0.19 3.49 2.41 -69.09 -0.17 3.32 16 7 H 0.13 2.59 7.20 -51.93 -0.37 2.22 16 8 C -0.07 -1.02 5.12 -27.89 -0.14 -1.17 16 9 C 0.15 2.09 5.90 -82.59 -0.49 1.60 16 10 C -0.17 -2.09 9.71 -39.44 -0.38 -2.47 16 11 C -0.07 -0.82 10.18 -39.28 -0.40 -1.22 16 12 C -0.18 -2.05 10.11 -39.44 -0.40 -2.45 16 13 C 0.11 1.39 11.18 -17.55 -0.20 1.19 16 14 N -0.47 -7.28 9.79 -9.47 -0.09 -7.37 16 15 N -0.70 -14.95 4.36 -54.62 -0.24 -15.19 16 16 C 0.31 7.79 7.39 -155.02 -1.15 6.64 16 17 N -0.53 -13.30 9.17 -11.86 -0.11 -13.41 16 18 C 0.00 0.10 11.17 -17.33 -0.19 -0.09 16 19 C -0.19 -4.62 10.08 -39.50 -0.40 -5.02 16 20 C -0.12 -3.31 8.79 -38.62 -0.34 -3.65 16 21 C 0.04 1.02 5.60 -106.47 -0.60 0.42 16 22 C -0.45 -11.75 8.53 -37.89 -0.32 -12.08 16 23 H 0.07 1.76 6.67 -52.49 -0.35 1.41 16 24 C 0.07 1.87 5.23 -17.32 -0.09 1.78 16 25 N -0.80 -20.90 10.83 55.55 0.60 -20.30 16 26 Si 0.91 18.62 29.58 -169.99 -5.03 13.60 16 27 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 28 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 29 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 34 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 35 H 0.09 1.04 7.87 -51.93 -0.41 0.63 16 36 H 0.10 1.27 8.00 -51.93 -0.42 0.85 16 37 H 0.13 1.37 7.95 -52.49 -0.42 0.96 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.15 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.41 8.40 6.80 -40.82 -0.28 8.12 16 42 H 0.12 2.48 8.06 -52.48 -0.42 2.05 16 43 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 44 H 0.13 3.46 6.18 -52.48 -0.32 3.13 16 45 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -32.90 386.31 -10.06 -42.96 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -5.93 Total: 16.23 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -4.39 Total: -4.50 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.16 Total: -56.27 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.70 Total: -17.83 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.90 -10.06 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170840448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.138 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds