Wall clock time and date at job start Sat Apr 11 2020 06:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.47458 * 2 1 4 4 C 1.34230 * 117.00213 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99812 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99734 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47248 * 60.00504 * 6 4 3 8 8 C 1.52990 * 109.47060 * 299.99594 * 6 4 3 9 9 C 1.50704 * 109.47099 * 175.00475 * 8 6 4 10 10 C 1.38228 * 119.62026 * 125.00195 * 9 8 6 11 11 C 1.38629 * 119.15983 * 179.97438 * 10 9 8 12 12 C 1.38674 * 118.42173 * 359.97438 * 11 10 9 13 13 C 1.38178 * 119.16023 * 0.02562 * 12 11 10 14 14 N 1.31851 * 119.61687 * 304.72623 * 9 8 6 15 15 N 1.46499 * 109.46679 * 180.02562 * 6 4 3 16 16 C 1.38099 * 119.99996 * 275.00103 * 15 6 4 17 17 N 1.32261 * 119.90608 * 359.97438 * 16 15 6 18 18 C 1.31961 * 121.86705 * 179.97438 * 17 16 15 19 19 C 1.38686 * 121.45092 * 359.97438 * 18 17 16 20 20 C 1.38009 * 119.61964 * 0.28101 * 19 18 17 21 21 C 1.40995 * 118.28582 * 359.46452 * 20 19 18 22 22 C 1.41018 * 120.71011 * 180.23337 * 21 20 19 23 23 H 1.08002 * 120.00623 * 205.27212 * 22 21 20 24 24 C 1.39951 * 119.99497 * 25.28123 * 22 21 20 25 25 N 1.30864 * 120.00367 * 14.11638 * 24 22 21 26 26 Si 1.86803 * 119.99526 * 194.11772 * 24 22 21 27 27 H 1.48494 * 109.46896 * 90.00194 * 26 24 22 28 28 H 1.48506 * 109.46586 * 209.99829 * 26 24 22 29 29 H 1.48500 * 109.47301 * 329.99610 * 26 24 22 30 30 H 1.09000 * 109.47379 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47135 * 299.99919 * 1 2 3 32 32 H 1.09005 * 109.47255 * 59.99401 * 1 2 3 33 33 H 1.09007 * 109.47135 * 240.00081 * 2 1 3 34 34 H 1.09005 * 109.47255 * 120.00599 * 2 1 3 35 35 H 1.09003 * 109.47677 * 295.00580 * 8 6 4 36 36 H 1.09005 * 109.47031 * 55.00562 * 8 6 4 37 37 H 1.08001 * 120.41751 * 359.95497 * 10 9 8 38 38 H 1.07999 * 120.78437 * 180.02562 * 11 10 9 39 39 H 1.07995 * 120.41501 * 180.02562 * 12 11 10 40 40 H 1.08003 * 119.61349 * 179.97438 * 13 12 11 41 41 H 0.96998 * 120.00254 * 94.99767 * 15 6 4 42 42 H 1.08005 * 119.27735 * 180.02562 * 18 17 16 43 43 H 1.07998 * 120.18994 * 180.02562 * 19 18 17 44 44 H 1.08004 * 120.85128 * 179.69704 * 20 19 18 45 45 H 0.96996 * 120.00253 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5845 3.4692 0.8912 8 6 3.4497 3.6846 -1.2480 9 6 3.9239 5.1138 -1.1871 10 6 4.6661 5.6324 -2.2316 11 6 5.0969 6.9484 -2.1659 12 6 4.7632 7.6971 -1.0473 13 6 4.0180 7.1106 -0.0423 14 7 3.6213 5.8567 -0.1407 15 7 5.3837 2.8606 0.0010 16 6 6.0679 2.7198 1.1924 17 7 5.4005 2.6549 2.3324 18 6 6.0146 2.5200 3.4925 19 6 7.3967 2.4386 3.5745 20 6 8.1534 2.5052 2.4223 21 6 7.4830 2.6437 1.1897 22 6 8.2055 2.7119 -0.0194 23 1 7.7766 3.2077 -0.8777 24 6 9.4784 2.1368 -0.1072 25 7 9.8870 1.3073 0.8188 26 14 10.5941 2.5535 -1.5463 27 1 11.4241 3.7359 -1.2029 28 1 11.4779 1.3963 -1.8385 29 1 9.7673 2.8591 -2.7414 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8600 3.2032 -2.1358 36 1 2.3608 3.6647 -1.2943 37 1 4.9076 5.0200 -3.0878 38 1 5.6780 7.3805 -2.9672 39 1 5.0816 8.7256 -0.9629 40 1 3.7543 7.6868 0.8322 41 1 5.8719 2.9087 -0.8358 42 1 5.4281 2.4710 4.3981 43 1 7.8782 2.3280 4.5349 44 1 9.2312 2.4488 2.4635 45 1 10.7690 0.9085 0.7577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170840448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:39 Heat of formation + Delta-G solvation = -36.049028 kcal Electronic energy + Delta-G solvation = -29814.152088 eV Core-core repulsion = 25795.676540 eV Total energy + Delta-G solvation = -4018.475548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.71367 -40.92670 -40.24197 -37.85487 -36.77603 -35.84188 -33.98433 -33.16500 -32.61119 -32.30762 -31.26505 -29.26483 -27.23236 -26.48222 -24.40344 -24.11624 -23.40524 -22.80294 -22.61222 -21.39919 -19.17062 -18.84324 -18.44850 -17.95039 -17.57452 -17.39223 -17.11985 -16.86756 -16.33229 -16.19358 -15.73830 -15.27491 -15.11887 -14.91961 -14.70637 -14.56494 -14.28007 -14.07410 -13.92378 -13.66031 -13.57061 -13.30348 -13.14621 -13.11124 -12.87225 -12.70756 -12.56283 -12.48827 -12.44646 -12.18316 -11.73115 -11.62773 -11.49682 -11.16215 -10.83291 -10.67862 -10.25923 -10.02621 -9.84694 -9.78756 -8.65650 -8.40516 -6.18063 0.25368 0.48193 0.90504 1.15074 1.26557 1.39096 1.52065 1.53347 1.72294 2.21657 2.63429 2.84187 2.94161 3.36803 3.59336 3.81413 3.94202 3.99939 4.02295 4.12067 4.14756 4.20955 4.27118 4.34560 4.35240 4.35654 4.60295 4.65874 4.74502 4.84132 4.85949 4.91266 4.94272 4.95647 5.00102 5.15548 5.21075 5.28327 5.31705 5.36032 5.48262 5.74605 5.88629 5.89643 6.08360 6.32270 6.65268 6.74356 6.85244 6.89522 7.07825 7.16684 7.87267 8.39193 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007335 B = 0.004929 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3816.165064 B = 5678.751014 C = 7414.413282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.050 3.950 3 O -0.358 6.358 4 C 0.447 3.553 5 O -0.532 6.532 6 C 0.195 3.805 7 H 0.112 0.888 8 C -0.064 4.064 9 C 0.122 3.878 10 C -0.173 4.173 11 C -0.077 4.077 12 C -0.177 4.177 13 C 0.083 3.917 14 N -0.505 5.505 15 N -0.694 5.694 16 C 0.304 3.696 17 N -0.541 5.541 18 C -0.004 4.004 19 C -0.195 4.195 20 C -0.151 4.151 21 C 0.006 3.994 22 C -0.475 4.475 23 H 0.082 0.918 24 C 0.031 3.969 25 N -0.834 5.834 26 Si 0.983 3.017 27 H -0.264 1.264 28 H -0.275 1.275 29 H -0.251 1.251 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.153 0.847 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.167 0.833 41 H 0.407 0.593 42 H 0.145 0.855 43 H 0.119 0.881 44 H 0.113 0.887 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.510 8.004 -8.673 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.024 4.024 3 O -0.274 6.274 4 C 0.288 3.712 5 O -0.421 6.421 6 C 0.085 3.915 7 H 0.129 0.871 8 C -0.102 4.102 9 C -0.016 4.016 10 C -0.193 4.193 11 C -0.103 4.103 12 C -0.196 4.196 13 C -0.073 4.073 14 N -0.215 5.215 15 N -0.332 5.332 16 C 0.066 3.934 17 N -0.259 5.259 18 C -0.157 4.157 19 C -0.218 4.218 20 C -0.177 4.177 21 C -0.001 4.001 22 C -0.506 4.506 23 H 0.100 0.900 24 C -0.183 4.183 25 N -0.461 5.461 26 Si 0.804 3.196 27 H -0.189 1.189 28 H -0.201 1.201 29 H -0.174 1.174 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.171 0.829 38 H 0.179 0.821 39 H 0.178 0.822 40 H 0.184 0.816 41 H 0.245 0.755 42 H 0.163 0.837 43 H 0.137 0.863 44 H 0.131 0.869 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.686 7.212 -7.837 17.342 hybrid contribution 2.519 -0.286 -0.768 2.649 sum -11.167 6.926 -8.604 15.707 Atomic orbital electron populations 1.21796 0.89594 1.04347 1.03955 1.23251 0.97564 0.79806 1.01745 1.86520 1.23784 1.33240 1.83876 1.25297 0.80640 0.94079 0.71186 1.90660 1.61371 1.44097 1.45933 1.20135 0.81712 0.87410 1.02272 0.87084 1.20777 1.03783 0.89562 0.96091 1.20967 0.94996 0.95222 0.90375 1.22236 0.99157 0.97412 1.00469 1.21954 0.96395 0.93509 0.98423 1.22441 0.99643 1.02725 0.94829 1.23083 0.94515 0.90662 0.99083 1.67342 1.22279 1.07330 1.24549 1.43446 1.02680 1.81603 1.05432 1.18552 0.88222 1.00382 0.86251 1.66570 1.41279 1.19824 0.98209 1.21857 0.92045 1.07731 0.94103 1.21652 0.95287 1.06373 0.98447 1.21435 0.99454 1.05314 0.91509 1.18263 0.90288 0.96313 0.95242 1.19390 1.01015 1.32755 0.97407 0.90006 1.26732 0.99299 0.92102 1.00136 1.69885 1.19591 1.21624 1.34991 0.85181 0.77782 0.78543 0.78103 1.18851 1.20052 1.17386 0.88239 0.91442 0.90458 0.91474 0.93092 0.87767 0.86021 0.82907 0.82102 0.82230 0.81615 0.75523 0.83723 0.86290 0.86883 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 10.29 71.98 0.74 -1.66 16 2 C 0.05 1.33 6.19 71.98 0.45 1.77 16 3 O -0.36 -11.43 10.03 -51.42 -0.52 -11.94 16 4 C 0.45 17.31 7.30 71.24 0.52 17.83 16 5 O -0.53 -25.13 16.10 21.95 0.35 -24.78 16 6 C 0.19 7.15 2.41 44.24 0.11 7.26 16 7 H 0.11 4.56 7.20 -2.39 -0.02 4.54 16 8 C -0.06 -1.72 5.12 29.85 0.15 -1.56 16 9 C 0.12 3.39 5.90 42.55 0.25 3.65 16 10 C -0.17 -4.00 9.71 22.36 0.22 -3.78 16 11 C -0.08 -1.55 10.18 22.47 0.23 -1.32 16 12 C -0.18 -3.64 10.11 22.36 0.23 -3.41 16 13 C 0.08 2.12 11.18 84.67 0.95 3.07 16 14 N -0.51 -15.49 9.79 -183.89 -1.80 -17.29 16 15 N -0.69 -30.11 4.36 -326.70 -1.42 -31.54 16 16 C 0.30 15.75 7.39 134.05 0.99 16.74 16 17 N -0.54 -27.81 9.17 -191.44 -1.76 -29.56 16 18 C 0.00 -0.21 11.17 84.78 0.95 0.74 16 19 C -0.20 -9.71 10.08 22.32 0.22 -9.49 16 20 C -0.15 -8.30 8.79 22.89 0.20 -8.10 16 21 C 0.01 0.32 5.60 -21.06 -0.12 0.20 16 22 C -0.47 -25.00 8.53 23.37 0.20 -24.81 16 23 H 0.08 3.99 6.67 -2.91 -0.02 3.97 16 24 C 0.03 1.55 5.23 85.25 0.45 1.99 16 25 N -0.83 -44.60 10.83 21.83 0.24 -44.37 16 26 Si 0.98 37.82 29.58 68.60 2.03 39.85 16 27 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 28 H -0.28 -10.37 7.11 99.48 0.71 -9.66 16 29 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.07 1.74 8.13 -2.38 -0.02 1.72 16 34 H 0.05 1.50 8.13 -2.38 -0.02 1.48 16 35 H 0.10 2.37 7.87 -2.39 -0.02 2.35 16 36 H 0.12 2.80 8.00 -2.38 -0.02 2.78 16 37 H 0.15 2.77 7.95 -2.91 -0.02 2.75 16 38 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.17 3.46 8.06 -2.91 -0.02 3.43 16 41 H 0.41 17.03 6.80 -92.71 -0.63 16.39 16 42 H 0.15 6.06 8.06 -2.91 -0.02 6.04 16 43 H 0.12 5.14 8.06 -2.91 -0.02 5.11 16 44 H 0.11 6.43 6.18 -2.91 -0.02 6.41 16 45 H 0.28 13.89 8.30 -92.71 -0.77 13.12 16 Total: -1.00 -73.89 386.31 4.24 -69.64 By element: Atomic # 1 Polarization: 50.47 SS G_CDS: 0.39 Total: 50.86 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 6.73 Total: -0.87 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -4.74 Total: -122.76 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -0.16 Total: -36.72 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Total: -73.89 4.24 -69.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170840448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.596 kcal (2) G-P(sol) polarization free energy of solvation -73.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds