Wall clock time and date at job start Sat Apr 11 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46937 * 2 1 4 4 C 1.35720 * 117.00018 * 180.02562 * 3 2 1 5 5 C 1.39228 * 120.38440 * 179.97438 * 4 3 2 6 6 C 1.38313 * 118.44667 * 180.02562 * 5 4 3 7 7 C 1.39469 * 119.13572 * 0.02562 * 6 5 4 8 8 C 1.47928 * 119.66264 * 180.02562 * 7 6 5 9 9 O 1.21548 * 119.99463 * 353.13773 * 8 7 6 10 10 N 1.34773 * 120.00261 * 173.13754 * 8 7 6 11 11 C 1.46499 * 120.00012 * 2.99595 * 10 8 7 12 12 C 1.50703 * 109.47366 * 82.69893 * 11 10 8 13 13 H 1.07996 * 119.99758 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00109 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00239 * 180.02562 * 14 12 11 16 16 Si 1.86809 * 120.00010 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.46923 * 89.99710 * 16 14 12 18 18 H 1.48499 * 109.46938 * 209.99907 * 16 14 12 19 19 H 1.48500 * 109.47113 * 329.99832 * 16 14 12 20 20 C 1.46502 * 119.99797 * 182.98994 * 10 8 7 21 21 C 1.50705 * 109.46604 * 90.00486 * 20 10 8 22 22 C 1.38674 * 120.41334 * 269.71834 * 21 20 10 23 23 C 1.38633 * 118.41572 * 179.78748 * 22 21 20 24 24 C 1.38224 * 119.15917 * 0.50983 * 23 22 21 25 25 N 1.31857 * 120.76586 * 359.73029 * 24 23 22 26 26 C 1.31877 * 121.72482 * 359.97438 * 25 24 23 27 27 N 1.32807 * 120.68183 * 0.02562 * 7 6 5 28 28 C 1.31370 * 121.69104 * 359.66569 * 27 7 6 29 29 H 1.09003 * 109.46669 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47248 * 300.00033 * 1 2 3 31 31 H 1.08998 * 109.47354 * 59.99938 * 1 2 3 32 32 H 1.09001 * 109.47248 * 239.99967 * 2 1 3 33 33 H 1.08998 * 109.47354 * 120.00062 * 2 1 3 34 34 H 1.08005 * 120.77423 * 0.02562 * 5 4 3 35 35 H 1.08004 * 120.43654 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47148 * 202.70518 * 11 10 8 37 37 H 1.09002 * 109.46912 * 322.70219 * 11 10 8 38 38 H 0.97005 * 120.00242 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.46873 * 209.99712 * 20 10 8 40 40 H 1.08994 * 109.47353 * 330.00221 * 20 10 8 41 41 H 1.07997 * 120.79638 * 0.02562 * 22 21 20 42 42 H 1.07999 * 120.41683 * 180.21504 * 23 22 21 43 43 H 1.08007 * 119.61728 * 179.75106 * 24 23 22 44 44 H 1.08002 * 119.61989 * 180.02562 * 26 25 24 45 45 H 1.08010 * 119.59631 * 180.31046 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3518 1.5252 -0.0005 5 6 3.8925 2.8082 -0.0011 6 6 5.2691 2.9430 -0.0022 7 6 6.0636 1.7967 -0.0032 8 6 7.5371 1.9273 -0.0038 9 8 8.0501 3.0221 -0.1292 10 7 8.3108 0.8325 0.1347 11 6 7.6946 -0.4938 0.2198 12 6 7.3943 -0.9984 -1.1681 13 1 7.6384 -0.3918 -2.0277 14 6 6.8089 -2.2347 -1.3406 15 7 6.5473 -2.6751 -2.5518 16 14 6.3873 -3.2841 0.1462 17 1 5.0082 -2.9701 0.5987 18 1 6.4727 -4.7203 -0.2214 19 1 7.3458 -2.9960 1.2433 20 6 9.7680 0.9689 0.1999 21 6 10.1925 1.1412 1.6356 22 6 10.2899 2.4079 2.1916 23 6 10.6799 2.5182 3.5174 24 6 10.9671 1.3707 4.2326 25 7 10.8684 0.1825 3.6695 26 6 10.4948 0.0395 2.4129 27 7 5.5110 0.5891 -0.0037 28 6 4.2074 0.4267 0.0033 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2520 3.6778 -0.0007 35 1 5.7229 3.9231 -0.0031 36 1 8.3795 -1.1814 0.7162 37 1 6.7685 -0.4282 0.7908 38 1 6.1350 -3.5448 -2.6731 39 1 10.2354 0.0745 -0.2123 40 1 10.0777 1.8398 -0.3777 41 1 10.0636 3.2873 1.6070 42 1 10.7630 3.4886 3.9840 43 1 11.2755 1.4483 5.2648 44 1 10.4250 -0.9501 1.9861 45 1 3.7942 -0.5713 0.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190781019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:56 Heat of formation + Delta-G solvation = 25.147236 kcal Electronic energy + Delta-G solvation = -29758.850840 eV Core-core repulsion = 25743.028961 eV Total energy + Delta-G solvation = -4015.821878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63206 -40.05217 -39.04995 -37.60196 -35.43330 -33.11579 -32.47505 -32.11213 -31.48002 -31.40506 -29.80834 -28.03632 -26.25941 -24.41942 -23.80696 -23.42565 -22.31182 -22.21994 -21.64415 -19.35275 -18.16949 -17.11127 -17.01854 -16.72206 -16.53572 -16.19509 -15.97510 -15.47152 -15.20857 -14.65752 -14.44777 -14.13665 -13.78878 -13.75393 -13.54098 -13.45546 -13.14366 -13.06019 -12.86898 -12.80537 -12.48385 -12.30603 -12.19905 -11.87450 -11.85324 -11.47242 -11.19330 -10.94421 -10.89694 -10.65534 -10.24037 -9.78385 -9.60430 -9.50721 -9.46070 -9.29437 -8.91924 -8.64361 -8.38222 -8.23023 -7.76058 -6.07687 -4.01097 1.09275 1.22248 1.44558 1.53734 3.09733 3.21559 3.25532 3.31399 3.34463 3.64286 4.08970 4.30061 4.38398 4.59016 4.70229 4.77459 4.83240 4.89674 4.96285 5.07816 5.09051 5.16560 5.18842 5.23725 5.24702 5.27619 5.39969 5.53550 5.64884 5.66032 5.78467 5.81245 5.90410 5.95615 6.08522 6.11714 6.23410 6.27835 6.46760 6.53205 6.64732 6.85220 7.07522 7.28311 7.41691 7.63177 8.05874 8.10544 8.23931 8.50502 8.80261 8.96881 9.53903 11.05770 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.004238 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.964414 B = 6605.216516 C = 8033.978731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.312 6.312 4 C 0.094 3.906 5 C -0.131 4.131 6 C -0.077 4.077 7 C 0.042 3.958 8 C 0.578 3.422 9 O -0.567 6.567 10 N -0.567 5.567 11 C 0.199 3.801 12 C -0.495 4.495 13 H 0.071 0.929 14 C 0.077 3.923 15 N -0.901 5.901 16 Si 0.869 3.131 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.265 1.265 20 C 0.157 3.843 21 C -0.146 4.146 22 C -0.056 4.056 23 C -0.180 4.180 24 C 0.090 3.910 25 N -0.490 5.490 26 C 0.113 3.887 27 N -0.352 5.352 28 C 0.012 3.988 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.021 0.979 37 H 0.073 0.927 38 H 0.262 0.738 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.139 0.861 42 H 0.131 0.869 43 H 0.150 0.850 44 H 0.156 0.844 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 7.948 9.245 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.224 6.224 4 C 0.046 3.954 5 C -0.157 4.157 6 C -0.098 4.098 7 C -0.097 4.097 8 C 0.366 3.634 9 O -0.448 6.448 10 N -0.295 5.295 11 C 0.078 3.922 12 C -0.534 4.534 13 H 0.089 0.911 14 C -0.124 4.124 15 N -0.540 5.540 16 Si 0.696 3.304 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.190 1.190 20 C 0.033 3.967 21 C -0.149 4.149 22 C -0.082 4.082 23 C -0.200 4.200 24 C -0.067 4.067 25 N -0.198 5.198 26 C -0.045 4.045 27 N -0.064 5.064 28 C -0.149 4.149 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.039 0.961 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.157 0.843 42 H 0.149 0.851 43 H 0.168 0.832 44 H 0.174 0.826 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.276 6.994 9.563 12.292 hybrid contribution -1.136 0.376 0.051 1.198 sum -4.412 7.370 9.614 12.892 Atomic orbital electron populations 1.21760 0.92630 1.02922 1.03317 1.22895 0.95918 0.81677 1.02297 1.85975 1.18553 1.29728 1.88141 1.20374 0.83391 0.95482 0.96156 1.20718 0.94664 0.95168 1.05113 1.21858 0.92332 1.00126 0.95475 1.21014 0.94719 0.89189 1.04731 1.17717 0.85358 0.83871 0.76472 1.90660 1.74379 1.26556 1.53176 1.47884 1.04763 1.08593 1.68233 1.20498 0.94509 0.77838 0.99306 1.21145 1.38962 1.02131 0.91191 0.91094 1.24698 0.95227 0.97346 0.95127 1.69903 1.43631 1.19714 1.20764 0.86990 0.79504 0.79823 0.84064 1.20291 1.21517 1.18994 1.20245 0.81626 1.04117 0.90689 1.21436 1.00285 0.94186 0.99000 1.21682 0.93855 0.97895 0.94784 1.22118 1.02297 1.00124 0.95445 1.22705 0.96279 0.87909 0.99829 1.67698 1.13213 1.26839 1.12050 1.22787 0.93525 0.98971 0.89186 1.68434 1.10761 1.23183 1.04005 1.23200 0.89721 0.98183 1.03794 0.90268 0.91665 0.91505 0.91218 0.91674 0.84054 0.83461 0.96115 0.91047 0.92816 0.88718 0.89241 0.84312 0.85147 0.83238 0.82627 0.82595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.05 0.55 5.47 37.16 0.20 0.75 16 3 O -0.31 -4.37 10.14 -18.87 -0.19 -4.56 16 4 C 0.09 1.49 6.72 -38.84 -0.26 1.23 16 5 C -0.13 -1.92 10.12 -39.19 -0.40 -2.32 16 6 C -0.08 -1.27 9.62 -39.10 -0.38 -1.64 16 7 C 0.04 0.82 6.62 -83.02 -0.55 0.28 16 8 C 0.58 11.99 7.58 -12.29 -0.09 11.90 16 9 O -0.57 -11.84 15.69 5.32 0.08 -11.75 16 10 N -0.57 -11.60 2.46 -177.51 -0.44 -12.04 16 11 C 0.20 4.48 3.84 -5.19 -0.02 4.46 16 12 C -0.50 -12.99 8.48 -34.44 -0.29 -13.28 16 13 H 0.07 2.12 8.06 -52.49 -0.42 1.69 16 14 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 15 N -0.90 -26.13 13.96 55.43 0.77 -25.36 16 16 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 20 C 0.16 2.72 5.55 -5.19 -0.03 2.69 16 21 C -0.15 -2.32 5.48 -104.48 -0.57 -2.89 16 22 C -0.06 -0.81 9.86 -39.27 -0.39 -1.20 16 23 C -0.18 -2.25 10.11 -39.44 -0.40 -2.65 16 24 C 0.09 1.18 11.18 -17.55 -0.20 0.98 16 25 N -0.49 -7.68 10.36 -13.25 -0.14 -7.81 16 26 C 0.11 1.79 10.86 -17.55 -0.19 1.60 16 27 N -0.35 -7.33 4.94 -9.67 -0.05 -7.37 16 28 C 0.01 0.22 10.21 -17.38 -0.18 0.04 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 33 H 0.06 0.71 7.66 -51.93 -0.40 0.32 16 34 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.15 2.17 7.65 -52.48 -0.40 1.77 16 36 H 0.02 0.46 7.07 -51.93 -0.37 0.10 16 37 H 0.07 1.65 4.69 -52.19 -0.24 1.40 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.09 1.57 8.02 -51.93 -0.42 1.15 16 40 H 0.09 1.52 7.33 -51.93 -0.38 1.14 16 41 H 0.14 2.00 7.85 -52.49 -0.41 1.59 16 42 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 44 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 45 H 0.16 2.70 6.31 -52.48 -0.33 2.37 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -31.88 380.53 -8.24 -40.12 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.90 Total: 6.51 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -3.45 Total: 1.01 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.15 Total: -52.59 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.11 Total: -16.31 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.88 -8.24 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190781019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.268 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds