Wall clock time and date at job start Sat Apr 11 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46937 * 2 1 4 4 C 1.35720 * 117.00018 * 180.02562 * 3 2 1 5 5 C 1.39228 * 120.38440 * 179.97438 * 4 3 2 6 6 C 1.38313 * 118.44667 * 180.02562 * 5 4 3 7 7 C 1.39469 * 119.13572 * 0.02562 * 6 5 4 8 8 C 1.47928 * 119.66264 * 180.02562 * 7 6 5 9 9 O 1.21548 * 119.99463 * 353.13773 * 8 7 6 10 10 N 1.34773 * 120.00261 * 173.13754 * 8 7 6 11 11 C 1.46499 * 120.00012 * 2.99595 * 10 8 7 12 12 C 1.50703 * 109.47366 * 82.69893 * 11 10 8 13 13 H 1.07996 * 119.99758 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00109 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00239 * 180.02562 * 14 12 11 16 16 Si 1.86809 * 120.00010 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.46923 * 89.99710 * 16 14 12 18 18 H 1.48499 * 109.46938 * 209.99907 * 16 14 12 19 19 H 1.48500 * 109.47113 * 329.99832 * 16 14 12 20 20 C 1.46502 * 119.99797 * 182.98994 * 10 8 7 21 21 C 1.50705 * 109.46604 * 90.00486 * 20 10 8 22 22 C 1.38674 * 120.41334 * 269.71834 * 21 20 10 23 23 C 1.38633 * 118.41572 * 179.78748 * 22 21 20 24 24 C 1.38224 * 119.15917 * 0.50983 * 23 22 21 25 25 N 1.31857 * 120.76586 * 359.73029 * 24 23 22 26 26 C 1.31877 * 121.72482 * 359.97438 * 25 24 23 27 27 N 1.32807 * 120.68183 * 0.02562 * 7 6 5 28 28 C 1.31370 * 121.69104 * 359.66569 * 27 7 6 29 29 H 1.09003 * 109.46669 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47248 * 300.00033 * 1 2 3 31 31 H 1.08998 * 109.47354 * 59.99938 * 1 2 3 32 32 H 1.09001 * 109.47248 * 239.99967 * 2 1 3 33 33 H 1.08998 * 109.47354 * 120.00062 * 2 1 3 34 34 H 1.08005 * 120.77423 * 0.02562 * 5 4 3 35 35 H 1.08004 * 120.43654 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47148 * 202.70518 * 11 10 8 37 37 H 1.09002 * 109.46912 * 322.70219 * 11 10 8 38 38 H 0.97005 * 120.00242 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.46873 * 209.99712 * 20 10 8 40 40 H 1.08994 * 109.47353 * 330.00221 * 20 10 8 41 41 H 1.07997 * 120.79638 * 0.02562 * 22 21 20 42 42 H 1.07999 * 120.41683 * 180.21504 * 23 22 21 43 43 H 1.08007 * 119.61728 * 179.75106 * 24 23 22 44 44 H 1.08002 * 119.61989 * 180.02562 * 26 25 24 45 45 H 1.08010 * 119.59631 * 180.31046 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3518 1.5252 -0.0005 5 6 3.8925 2.8082 -0.0011 6 6 5.2691 2.9430 -0.0022 7 6 6.0636 1.7967 -0.0032 8 6 7.5371 1.9273 -0.0038 9 8 8.0501 3.0221 -0.1292 10 7 8.3108 0.8325 0.1347 11 6 7.6946 -0.4938 0.2198 12 6 7.3943 -0.9984 -1.1681 13 1 7.6384 -0.3918 -2.0277 14 6 6.8089 -2.2347 -1.3406 15 7 6.5473 -2.6751 -2.5518 16 14 6.3873 -3.2841 0.1462 17 1 5.0082 -2.9701 0.5987 18 1 6.4727 -4.7203 -0.2214 19 1 7.3458 -2.9960 1.2433 20 6 9.7680 0.9689 0.1999 21 6 10.1925 1.1412 1.6356 22 6 10.2899 2.4079 2.1916 23 6 10.6799 2.5182 3.5174 24 6 10.9671 1.3707 4.2326 25 7 10.8684 0.1825 3.6695 26 6 10.4948 0.0395 2.4129 27 7 5.5110 0.5891 -0.0037 28 6 4.2074 0.4267 0.0033 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2520 3.6778 -0.0007 35 1 5.7229 3.9231 -0.0031 36 1 8.3795 -1.1814 0.7162 37 1 6.7685 -0.4282 0.7908 38 1 6.1350 -3.5448 -2.6731 39 1 10.2354 0.0745 -0.2123 40 1 10.0777 1.8398 -0.3777 41 1 10.0636 3.2873 1.6070 42 1 10.7630 3.4886 3.9840 43 1 11.2755 1.4483 5.2648 44 1 10.4250 -0.9501 1.9861 45 1 3.7942 -0.5713 0.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190781019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:55 Heat of formation + Delta-G solvation = 6.284012 kcal Electronic energy + Delta-G solvation = -29759.668810 eV Core-core repulsion = 25743.028961 eV Total energy + Delta-G solvation = -4016.639849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.98727 -41.22808 -40.38446 -38.90988 -37.03434 -34.72714 -33.92941 -33.44310 -32.64765 -32.53561 -31.04578 -29.85778 -27.63440 -25.55415 -25.22997 -24.63500 -24.01628 -23.32481 -22.83105 -20.83576 -19.34427 -19.00599 -18.46892 -18.00256 -17.92782 -17.24363 -17.18499 -16.81658 -16.65119 -16.22624 -15.86090 -15.61795 -15.18032 -14.91660 -14.74205 -14.68549 -14.46716 -14.44274 -14.26093 -13.96124 -13.90386 -13.47713 -13.37515 -13.26097 -13.15278 -12.74860 -12.64413 -12.52529 -12.23733 -12.03491 -11.88598 -11.65419 -11.21957 -10.82221 -10.77320 -10.62528 -10.47053 -10.09486 -9.83846 -9.60446 -9.35171 -8.17540 -6.15472 -0.27485 0.10683 0.24559 0.32422 1.37242 1.41459 1.50060 1.75358 2.00584 2.21777 2.41578 2.84469 2.94268 3.20987 3.28778 3.52399 3.53290 3.66362 3.85655 3.88206 3.96583 3.99492 4.08977 4.09308 4.10975 4.26040 4.33147 4.44350 4.50727 4.66380 4.71034 4.74725 4.77573 4.85428 4.87008 4.92176 4.97021 5.18564 5.21196 5.22104 5.35440 5.44174 5.59899 5.74647 5.76688 6.12806 6.26417 6.53663 6.78442 6.86059 6.99647 7.23268 7.44741 8.99867 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.004238 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.964414 B = 6605.216516 C = 8033.978731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 O -0.308 6.308 4 C 0.106 3.894 5 C -0.118 4.118 6 C -0.068 4.068 7 C 0.008 3.992 8 C 0.570 3.430 9 O -0.575 6.575 10 N -0.574 5.574 11 C 0.213 3.787 12 C -0.485 4.485 13 H 0.020 0.980 14 C 0.029 3.971 15 N -0.951 5.951 16 Si 0.926 3.074 17 H -0.259 1.259 18 H -0.291 1.291 19 H -0.251 1.251 20 C 0.157 3.843 21 C -0.156 4.156 22 C -0.064 4.064 23 C -0.168 4.168 24 C 0.090 3.910 25 N -0.509 5.509 26 C 0.099 3.901 27 N -0.388 5.388 28 C -0.006 4.006 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.181 0.819 35 H 0.165 0.835 36 H 0.026 0.974 37 H 0.076 0.924 38 H 0.263 0.737 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.137 0.863 42 H 0.167 0.833 43 H 0.187 0.813 44 H 0.153 0.847 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 9.260 12.045 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 O -0.220 6.220 4 C 0.057 3.943 5 C -0.144 4.144 6 C -0.089 4.089 7 C -0.130 4.130 8 C 0.359 3.641 9 O -0.457 6.457 10 N -0.302 5.302 11 C 0.092 3.908 12 C -0.524 4.524 13 H 0.038 0.962 14 C -0.168 4.168 15 N -0.593 5.593 16 Si 0.750 3.250 17 H -0.183 1.183 18 H -0.217 1.217 19 H -0.175 1.175 20 C 0.034 3.966 21 C -0.160 4.160 22 C -0.091 4.091 23 C -0.187 4.187 24 C -0.067 4.067 25 N -0.218 5.218 26 C -0.057 4.057 27 N -0.100 5.100 28 C -0.167 4.167 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.198 0.802 35 H 0.182 0.818 36 H 0.043 0.957 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.155 0.845 42 H 0.185 0.815 43 H 0.203 0.797 44 H 0.170 0.830 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.592 8.321 12.374 15.603 hybrid contribution -0.778 0.096 -0.848 1.154 sum -5.370 8.416 11.526 15.249 Atomic orbital electron populations 1.21783 0.90138 1.04332 1.03762 1.23195 0.97874 0.80511 1.02245 1.86006 1.17180 1.31320 1.87469 1.20408 0.84016 0.95290 0.94574 1.21107 0.94275 0.95972 1.03030 1.22046 0.92923 0.99729 0.94211 1.21083 0.94457 0.90220 1.07221 1.18033 0.86151 0.83790 0.76123 1.90626 1.74802 1.26567 1.53732 1.47900 1.05989 1.07841 1.68439 1.20195 0.94926 0.78871 0.96838 1.21140 1.38293 1.01519 0.91445 0.96158 1.25404 0.95084 0.98572 0.97760 1.70056 1.45523 1.20399 1.23291 0.86047 0.80488 0.77588 0.80829 1.18336 1.21723 1.17473 1.20293 0.80121 1.03911 0.92288 1.21222 1.01697 0.95101 0.97938 1.21790 0.94170 0.97132 0.95972 1.22477 1.00225 1.01732 0.94252 1.23355 0.94850 0.87162 1.01291 1.67724 1.13878 1.28451 1.11766 1.22754 0.94399 0.98880 0.89703 1.68190 1.12234 1.24242 1.05315 1.23275 0.89413 0.99235 1.04788 0.88399 0.90852 0.91398 0.92078 0.91022 0.80211 0.81760 0.95656 0.90667 0.92842 0.88928 0.89443 0.84505 0.81506 0.79656 0.83007 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.04 0.78 5.47 71.98 0.39 1.17 16 3 O -0.31 -7.94 10.14 -90.42 -0.92 -8.85 16 4 C 0.11 3.18 6.72 22.75 0.15 3.34 16 5 C -0.12 -3.18 10.12 22.53 0.23 -2.95 16 6 C -0.07 -2.16 9.62 22.58 0.22 -1.94 16 7 C 0.01 0.31 6.62 41.86 0.28 0.59 16 8 C 0.57 24.18 7.58 86.81 0.66 24.84 16 9 O -0.58 -24.30 15.69 -3.87 -0.06 -24.36 16 10 N -0.57 -24.26 2.46 -833.81 -2.05 -26.31 16 11 C 0.21 9.83 3.84 85.63 0.33 10.16 16 12 C -0.48 -26.59 8.48 25.60 0.22 -26.37 16 13 H 0.02 1.29 8.06 -2.91 -0.02 1.26 16 14 C 0.03 1.59 5.47 84.65 0.46 2.05 16 15 N -0.95 -57.36 13.96 21.44 0.30 -57.06 16 16 Si 0.93 41.89 27.47 68.60 1.88 43.78 16 17 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 20 C 0.16 5.64 5.55 85.63 0.48 6.12 16 21 C -0.16 -4.99 5.48 -19.77 -0.11 -5.09 16 22 C -0.06 -1.79 9.86 22.47 0.22 -1.57 16 23 C -0.17 -3.71 10.11 22.36 0.23 -3.48 16 24 C 0.09 2.11 11.18 84.69 0.95 3.05 16 25 N -0.51 -15.25 10.36 -195.85 -2.03 -17.28 16 26 C 0.10 3.15 10.86 84.67 0.92 4.07 16 27 N -0.39 -16.35 4.94 -184.51 -0.91 -17.26 16 28 C -0.01 -0.21 10.21 85.00 0.87 0.66 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.42 7.68 -2.39 -0.02 1.40 16 33 H 0.07 1.45 7.66 -2.39 -0.02 1.43 16 34 H 0.18 3.43 8.06 -2.91 -0.02 3.40 16 35 H 0.16 4.53 7.65 -2.91 -0.02 4.51 16 36 H 0.03 1.14 7.07 -2.39 -0.02 1.13 16 37 H 0.08 3.51 4.69 -2.91 -0.01 3.49 16 38 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 39 H 0.09 3.26 8.02 -2.39 -0.02 3.24 16 40 H 0.09 3.11 7.33 -2.39 -0.02 3.10 16 41 H 0.14 3.85 7.85 -2.91 -0.02 3.83 16 42 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 43 H 0.19 2.88 8.06 -2.91 -0.02 2.85 16 44 H 0.15 4.74 8.06 -2.91 -0.02 4.71 16 45 H 0.16 5.43 6.31 -2.91 -0.02 5.41 16 Total: -1.00 -71.80 380.53 4.39 -67.41 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.95 Total: 26.69 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 7.22 Total: 13.25 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -4.69 Total: -117.91 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.98 Total: -33.21 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.88 Total: 43.78 kcal Total: -71.80 4.39 -67.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190781019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.692 kcal (2) G-P(sol) polarization free energy of solvation -71.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds