Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.46854 * 2 1 4 4 C 1.35435 * 119.47318 * 89.99775 * 3 2 1 5 5 C 1.35759 * 121.23044 * 180.29536 * 4 3 2 6 6 C 1.39471 * 120.13361 * 359.45648 * 5 4 3 7 7 C 1.39346 * 118.95364 * 0.53371 * 6 5 4 8 8 C 1.47081 * 120.58327 * 179.71662 * 7 6 5 9 9 O 1.21643 * 119.99949 * 255.31510 * 8 7 6 10 10 N 1.34781 * 119.99847 * 75.31066 * 8 7 6 11 11 C 1.46493 * 120.00291 * 5.27956 * 10 8 7 12 12 C 1.50698 * 109.47370 * 94.88836 * 11 10 8 13 13 H 1.08003 * 120.00123 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00019 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00118 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00121 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47015 * 59.99389 * 16 14 12 18 18 H 1.48500 * 109.47410 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46763 * 299.99566 * 16 14 12 20 20 C 1.46504 * 119.99721 * 185.27253 * 10 8 7 21 21 C 1.50696 * 109.47107 * 90.00107 * 20 10 8 22 22 C 1.38670 * 120.42278 * 269.72572 * 21 20 10 23 23 C 1.38630 * 118.42143 * 179.78206 * 22 21 20 24 24 C 1.38229 * 119.15998 * 0.50837 * 23 22 21 25 25 N 1.31853 * 120.76238 * 359.73190 * 24 23 22 26 26 C 1.31880 * 121.72720 * 359.97438 * 25 24 23 27 27 C 1.34658 * 119.47204 * 270.01877 * 3 2 1 28 28 O 1.21887 * 120.10064 * 359.95497 * 27 3 2 29 29 H 1.09007 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47568 * 300.00095 * 1 2 3 31 31 H 1.09001 * 109.47050 * 60.00388 * 1 2 3 32 32 H 1.08992 * 109.47568 * 239.99905 * 2 1 3 33 33 H 1.09001 * 109.47050 * 119.99612 * 2 1 3 34 34 H 1.07998 * 119.38263 * 0.02562 * 4 3 2 35 35 H 1.07999 * 119.93263 * 179.70151 * 5 4 3 36 36 H 1.07994 * 120.52223 * 180.24948 * 6 5 4 37 37 H 1.09003 * 109.47193 * 214.89252 * 11 10 8 38 38 H 1.09006 * 109.46908 * 334.88842 * 11 10 8 39 39 H 0.96994 * 120.00493 * 180.02562 * 15 14 12 40 40 H 1.09000 * 109.47163 * 210.00492 * 20 10 8 41 41 H 1.09001 * 109.47061 * 330.00578 * 20 10 8 42 42 H 1.07998 * 120.79144 * 0.02562 * 22 21 20 43 43 H 1.07999 * 120.41761 * 180.21157 * 23 22 21 44 44 H 1.08005 * 119.61314 * 179.74555 * 24 23 22 45 45 H 1.08001 * 119.61690 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2403 2.0095 1.1791 5 6 2.6869 3.2909 1.2207 6 6 2.9374 3.9839 0.0366 7 6 2.7111 3.3439 -1.1804 8 6 2.9573 4.0430 -2.4507 9 8 2.0214 4.4537 -3.1103 10 7 4.2200 4.2288 -2.8840 11 6 5.3408 3.6350 -2.1509 12 6 5.7024 2.3107 -2.7725 13 1 5.1526 1.9477 -3.6284 14 6 6.7351 1.5623 -2.2486 15 7 7.4049 2.0044 -1.2068 16 14 7.1838 -0.0790 -3.0195 17 1 7.5752 0.1303 -4.4367 18 1 8.3199 -0.6809 -2.2764 19 1 6.0133 -0.9908 -2.9588 20 6 4.4716 5.0244 -4.0882 21 6 4.6585 6.4698 -3.7052 22 6 3.5714 7.3293 -3.6558 23 6 3.7901 8.6496 -3.2941 24 6 5.0769 9.0651 -3.0070 25 7 6.0878 8.2208 -3.0692 26 6 5.9161 6.9568 -3.4039 27 6 2.2387 2.0060 -1.1723 28 8 2.0334 1.4238 -2.2233 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0545 1.4828 2.1034 35 1 2.8523 3.7732 2.1727 36 1 3.2966 5.0020 0.0624 37 1 6.1999 4.3043 -2.1962 38 1 5.0540 3.4818 -1.1105 39 1 8.1317 1.4782 -0.8385 40 1 5.3721 4.6601 -4.5827 41 1 3.6231 4.9350 -4.7665 42 1 2.5775 6.9776 -3.8897 43 1 2.9662 9.3459 -3.2419 44 1 5.2561 10.0930 -2.7285 45 1 6.7685 6.2947 -3.4437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194471635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = 5.767345 kcal Electronic energy + Delta-G solvation = -30233.528594 eV Core-core repulsion = 26216.866340 eV Total energy + Delta-G solvation = -4016.662254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.12667 -39.98828 -38.66783 -36.54961 -35.14681 -34.86285 -32.98083 -32.09248 -31.38924 -30.64801 -29.61053 -27.48435 -26.18386 -24.71900 -23.89290 -23.36681 -22.70597 -21.87860 -21.74878 -19.18155 -17.28837 -17.22208 -16.85451 -16.56538 -16.32531 -15.94536 -15.82418 -15.45165 -15.10205 -14.99030 -14.43168 -14.24027 -14.05359 -13.87801 -13.46715 -13.12217 -12.89384 -12.79951 -12.63799 -12.34192 -12.27527 -12.17077 -11.94253 -11.71512 -11.61872 -11.48364 -11.21430 -11.11202 -10.95100 -10.73133 -10.23392 -9.87524 -9.65236 -9.60772 -9.55057 -9.22193 -9.20402 -8.73452 -8.50441 -7.78813 -7.56033 -6.13414 -4.18443 0.94164 1.32601 1.53805 2.21320 2.71664 3.28217 3.31123 3.34338 3.40453 3.75084 3.99883 4.28806 4.39558 4.62818 4.68799 4.71545 5.02295 5.04438 5.08578 5.17973 5.20327 5.22069 5.23144 5.28331 5.32766 5.39587 5.42171 5.59004 5.68530 5.81252 5.91419 6.01698 6.07280 6.17605 6.22229 6.26625 6.37102 6.40557 6.61395 6.71294 6.74168 6.95699 7.18520 7.29901 7.52147 7.82036 8.10642 8.20607 8.28330 8.42043 8.82575 8.98522 9.48081 10.93474 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008841 B = 0.004951 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.435956 B = 5653.963205 C = 7577.018461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.086 3.914 3 N -0.493 5.493 4 C 0.140 3.860 5 C -0.230 4.230 6 C 0.011 3.989 7 C -0.218 4.218 8 C 0.589 3.411 9 O -0.559 6.559 10 N -0.582 5.582 11 C 0.238 3.762 12 C -0.530 4.530 13 H 0.061 0.939 14 C 0.066 3.934 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.160 3.840 21 C -0.144 4.144 22 C -0.058 4.058 23 C -0.181 4.181 24 C 0.089 3.911 25 N -0.489 5.489 26 C 0.116 3.884 27 C 0.541 3.459 28 O -0.529 6.529 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.159 0.841 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.035 0.965 38 H 0.041 0.959 39 H 0.264 0.736 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.150 0.850 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.356 4.477 6.818 12.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.035 4.035 3 N -0.203 5.203 4 C 0.011 3.989 5 C -0.253 4.253 6 C -0.012 4.012 7 C -0.225 4.225 8 C 0.376 3.624 9 O -0.439 6.439 10 N -0.311 5.311 11 C 0.119 3.881 12 C -0.568 4.568 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.202 1.202 20 C 0.036 3.964 21 C -0.147 4.147 22 C -0.085 4.085 23 C -0.201 4.201 24 C -0.068 4.068 25 N -0.197 5.197 26 C -0.041 4.041 27 C 0.341 3.659 28 O -0.409 6.409 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.176 0.824 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.167 0.833 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.957 4.482 6.067 11.710 hybrid contribution -0.300 -1.275 -0.224 1.329 sum -9.257 3.207 5.843 11.406 Atomic orbital electron populations 1.22112 0.94391 1.02930 1.02936 1.21949 0.95511 0.80916 1.05150 1.45453 1.53608 1.14562 1.06723 1.21910 0.93812 0.93811 0.89339 1.20430 1.10993 0.94726 0.99162 1.21647 0.89360 0.99323 0.90832 1.20786 1.11136 0.95462 0.95127 1.17429 0.82872 0.78040 0.84013 1.90676 1.43236 1.52888 1.57145 1.48158 1.07285 1.49029 1.26659 1.19478 0.83099 0.93212 0.92345 1.21454 1.16283 1.03731 1.15380 0.92032 1.24883 0.95853 0.98036 0.94902 1.69914 1.21868 1.38515 1.22866 0.86620 0.77875 0.83865 0.79554 1.20008 1.21210 1.20193 1.20148 1.03347 0.84848 0.88082 1.21457 0.94444 0.97855 1.00960 1.21675 0.99525 0.92793 0.94500 1.22097 0.98590 0.96850 1.02562 1.22694 0.88673 0.99190 0.96268 1.67710 1.35012 1.03924 1.13083 1.22830 0.96547 0.91586 0.93161 1.16604 0.79765 0.86765 0.82784 1.90911 1.53533 1.67066 1.29369 0.90778 0.92275 0.91540 0.87983 0.89189 0.82355 0.83618 0.85007 0.94697 0.94128 0.92654 0.88756 0.89604 0.84519 0.85266 0.83309 0.82408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.24 37.16 0.38 -1.33 16 2 C 0.09 1.06 6.04 -4.04 -0.02 1.04 16 3 N -0.49 -7.69 2.58 -119.35 -0.31 -7.99 16 4 C 0.14 1.68 10.25 -16.85 -0.17 1.50 16 5 C -0.23 -2.92 9.99 -40.01 -0.40 -3.31 16 6 C 0.01 0.18 8.80 -38.71 -0.34 -0.16 16 7 C -0.22 -4.51 4.21 -104.50 -0.44 -4.95 16 8 C 0.59 13.35 6.67 -12.67 -0.08 13.26 16 9 O -0.56 -13.46 16.57 5.24 0.09 -13.37 16 10 N -0.58 -12.76 2.44 -177.83 -0.43 -13.19 16 11 C 0.24 5.77 5.12 -5.20 -0.03 5.75 16 12 C -0.53 -14.38 9.38 -34.44 -0.32 -14.70 16 13 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -24.75 13.29 55.43 0.74 -24.02 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.16 3.03 5.62 -5.19 -0.03 3.00 16 21 C -0.14 -2.44 5.48 -104.48 -0.57 -3.01 16 22 C -0.06 -0.90 9.86 -39.28 -0.39 -1.29 16 23 C -0.18 -2.38 10.11 -39.44 -0.40 -2.78 16 24 C 0.09 1.21 11.18 -17.55 -0.20 1.01 16 25 N -0.49 -7.98 10.36 -13.25 -0.14 -8.12 16 26 C 0.12 1.95 10.86 -17.55 -0.19 1.76 16 27 C 0.54 11.34 7.44 -14.92 -0.11 11.23 16 28 O -0.53 -13.07 16.11 5.02 0.08 -12.98 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.51 7.38 -51.93 -0.38 1.12 16 33 H 0.09 0.79 8.00 -51.93 -0.42 0.37 16 34 H 0.16 1.12 8.02 -52.49 -0.42 0.70 16 35 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.04 0.87 8.11 -51.93 -0.42 0.44 16 38 H 0.04 1.02 5.77 -51.93 -0.30 0.72 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.09 1.74 8.02 -51.93 -0.42 1.32 16 41 H 0.09 1.63 7.31 -51.93 -0.38 1.25 16 42 H 0.14 2.14 7.97 -52.49 -0.42 1.73 16 43 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 44 H 0.15 1.54 8.06 -52.48 -0.42 1.11 16 45 H 0.16 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 390.30 15.07 5.88 5.88 Total: -1.00 -35.82 390.30 -8.61 -44.43 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.08 Total: 4.26 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -3.41 Total: 8.71 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.14 Total: -53.32 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: 0.17 Total: -26.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.82 -8.61 -44.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194471635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.192 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds