Wall clock time and date at job start Sat Apr 11 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.46854 * 2 1 4 4 C 1.35435 * 119.47318 * 89.99775 * 3 2 1 5 5 C 1.35759 * 121.23044 * 180.29536 * 4 3 2 6 6 C 1.39471 * 120.13361 * 359.45648 * 5 4 3 7 7 C 1.39346 * 118.95364 * 0.53371 * 6 5 4 8 8 C 1.47081 * 120.58327 * 179.71662 * 7 6 5 9 9 O 1.21643 * 119.99949 * 255.31510 * 8 7 6 10 10 N 1.34781 * 119.99847 * 75.31066 * 8 7 6 11 11 C 1.46493 * 120.00291 * 5.27956 * 10 8 7 12 12 C 1.50698 * 109.47370 * 94.88836 * 11 10 8 13 13 H 1.08003 * 120.00123 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00019 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00118 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00121 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47015 * 59.99389 * 16 14 12 18 18 H 1.48500 * 109.47410 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46763 * 299.99566 * 16 14 12 20 20 C 1.46504 * 119.99721 * 185.27253 * 10 8 7 21 21 C 1.50696 * 109.47107 * 90.00107 * 20 10 8 22 22 C 1.38670 * 120.42278 * 269.72572 * 21 20 10 23 23 C 1.38630 * 118.42143 * 179.78206 * 22 21 20 24 24 C 1.38229 * 119.15998 * 0.50837 * 23 22 21 25 25 N 1.31853 * 120.76238 * 359.73190 * 24 23 22 26 26 C 1.31880 * 121.72720 * 359.97438 * 25 24 23 27 27 C 1.34658 * 119.47204 * 270.01877 * 3 2 1 28 28 O 1.21887 * 120.10064 * 359.95497 * 27 3 2 29 29 H 1.09007 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47568 * 300.00095 * 1 2 3 31 31 H 1.09001 * 109.47050 * 60.00388 * 1 2 3 32 32 H 1.08992 * 109.47568 * 239.99905 * 2 1 3 33 33 H 1.09001 * 109.47050 * 119.99612 * 2 1 3 34 34 H 1.07998 * 119.38263 * 0.02562 * 4 3 2 35 35 H 1.07999 * 119.93263 * 179.70151 * 5 4 3 36 36 H 1.07994 * 120.52223 * 180.24948 * 6 5 4 37 37 H 1.09003 * 109.47193 * 214.89252 * 11 10 8 38 38 H 1.09006 * 109.46908 * 334.88842 * 11 10 8 39 39 H 0.96994 * 120.00493 * 180.02562 * 15 14 12 40 40 H 1.09000 * 109.47163 * 210.00492 * 20 10 8 41 41 H 1.09001 * 109.47061 * 330.00578 * 20 10 8 42 42 H 1.07998 * 120.79144 * 0.02562 * 22 21 20 43 43 H 1.07999 * 120.41761 * 180.21157 * 23 22 21 44 44 H 1.08005 * 119.61314 * 179.74555 * 24 23 22 45 45 H 1.08001 * 119.61690 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2403 2.0095 1.1791 5 6 2.6869 3.2909 1.2207 6 6 2.9374 3.9839 0.0366 7 6 2.7111 3.3439 -1.1804 8 6 2.9573 4.0430 -2.4507 9 8 2.0214 4.4537 -3.1103 10 7 4.2200 4.2288 -2.8840 11 6 5.3408 3.6350 -2.1509 12 6 5.7024 2.3107 -2.7725 13 1 5.1526 1.9477 -3.6284 14 6 6.7351 1.5623 -2.2486 15 7 7.4049 2.0044 -1.2068 16 14 7.1838 -0.0790 -3.0195 17 1 7.5752 0.1303 -4.4367 18 1 8.3199 -0.6809 -2.2764 19 1 6.0133 -0.9908 -2.9588 20 6 4.4716 5.0244 -4.0882 21 6 4.6585 6.4698 -3.7052 22 6 3.5714 7.3293 -3.6558 23 6 3.7901 8.6496 -3.2941 24 6 5.0769 9.0651 -3.0070 25 7 6.0878 8.2208 -3.0692 26 6 5.9161 6.9568 -3.4039 27 6 2.2387 2.0060 -1.1723 28 8 2.0334 1.4238 -2.2233 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0545 1.4828 2.1034 35 1 2.8523 3.7732 2.1727 36 1 3.2966 5.0020 0.0624 37 1 6.1999 4.3043 -2.1962 38 1 5.0540 3.4818 -1.1105 39 1 8.1317 1.4782 -0.8385 40 1 5.3721 4.6601 -4.5827 41 1 3.6231 4.9350 -4.7665 42 1 2.5775 6.9776 -3.8897 43 1 2.9662 9.3459 -3.2419 44 1 5.2561 10.0930 -2.7285 45 1 6.7685 6.2947 -3.4437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194471635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:58 Heat of formation + Delta-G solvation = -17.364454 kcal Electronic energy + Delta-G solvation = -30234.531664 eV Core-core repulsion = 26216.866340 eV Total energy + Delta-G solvation = -4017.665324 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.45443 -41.28877 -40.22458 -37.99680 -36.88748 -36.06262 -34.83744 -33.58581 -32.65093 -31.75062 -30.86207 -29.38271 -27.68734 -25.91720 -25.29983 -24.79870 -24.30048 -23.11309 -22.96690 -20.69214 -18.86887 -18.61966 -18.29987 -17.98558 -17.85470 -17.47120 -17.18482 -16.84967 -16.53251 -16.38765 -16.21569 -15.44899 -15.37243 -15.01931 -14.78077 -14.56721 -14.24089 -14.19715 -14.03315 -13.89849 -13.52507 -13.50711 -13.39644 -13.24775 -12.99252 -12.85745 -12.78325 -12.64942 -12.48788 -12.19182 -12.13039 -11.80426 -11.25539 -10.98417 -10.90351 -10.74562 -10.56041 -10.47059 -9.98744 -9.56093 -8.88722 -8.23484 -6.35233 -0.29241 0.11729 0.31171 0.95249 1.33313 1.34130 1.37181 1.44817 1.87132 2.26291 2.39857 2.67716 2.96042 3.05681 3.52233 3.60587 3.70277 3.82629 3.85610 3.91961 4.02074 4.07280 4.08861 4.10525 4.13396 4.37189 4.40179 4.45314 4.63323 4.68378 4.70217 4.83201 4.86822 4.90086 4.97989 5.04429 5.14169 5.18130 5.18550 5.27048 5.36880 5.60481 5.64181 5.76391 5.77537 6.04575 6.05503 6.47415 6.75121 7.00200 7.01113 7.21495 7.35836 8.81849 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008841 B = 0.004951 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.435956 B = 5653.963205 C = 7577.018461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.077 3.923 3 N -0.490 5.490 4 C 0.162 3.838 5 C -0.236 4.236 6 C 0.032 3.968 7 C -0.291 4.291 8 C 0.585 3.415 9 O -0.589 6.589 10 N -0.585 5.585 11 C 0.261 3.739 12 C -0.545 4.545 13 H 0.034 0.966 14 C 0.031 3.969 15 N -0.909 5.909 16 Si 0.945 3.055 17 H -0.272 1.272 18 H -0.268 1.268 19 H -0.285 1.285 20 C 0.159 3.841 21 C -0.154 4.154 22 C -0.067 4.067 23 C -0.165 4.165 24 C 0.094 3.906 25 N -0.506 5.506 26 C 0.105 3.895 27 C 0.523 3.477 28 O -0.597 6.597 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.026 0.974 32 H 0.065 0.935 33 H 0.141 0.859 34 H 0.228 0.772 35 H 0.196 0.804 36 H 0.140 0.860 37 H 0.025 0.975 38 H 0.033 0.967 39 H 0.269 0.731 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.129 0.871 43 H 0.169 0.831 44 H 0.191 0.809 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.650 5.064 10.706 15.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.043 4.043 3 N -0.197 5.197 4 C 0.033 3.967 5 C -0.258 4.258 6 C 0.009 3.991 7 C -0.298 4.298 8 C 0.374 3.626 9 O -0.472 6.472 10 N -0.314 5.314 11 C 0.140 3.860 12 C -0.583 4.583 13 H 0.052 0.948 14 C -0.170 4.170 15 N -0.548 5.548 16 Si 0.771 3.229 17 H -0.198 1.198 18 H -0.193 1.193 19 H -0.211 1.211 20 C 0.036 3.964 21 C -0.157 4.157 22 C -0.094 4.094 23 C -0.184 4.184 24 C -0.064 4.064 25 N -0.215 5.215 26 C -0.051 4.051 27 C 0.326 3.674 28 O -0.483 6.483 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.159 0.841 34 H 0.244 0.756 35 H 0.213 0.787 36 H 0.158 0.842 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.147 0.853 43 H 0.186 0.814 44 H 0.207 0.793 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.237 5.070 9.990 14.520 hybrid contribution -0.272 -1.401 -1.275 1.913 sum -9.509 3.669 8.715 13.411 Atomic orbital electron populations 1.22071 0.92702 1.04421 1.02271 1.22296 0.96936 0.79199 1.05838 1.45615 1.51949 1.15663 1.06519 1.23091 0.89897 0.93827 0.89875 1.21048 1.10226 0.95075 0.99412 1.22038 0.86511 0.99658 0.90892 1.20660 1.17025 0.96574 0.95497 1.17900 0.82390 0.77518 0.84835 1.90611 1.43795 1.54217 1.58541 1.48161 1.06835 1.49280 1.27089 1.19040 0.83224 0.91781 0.91918 1.21531 1.16498 1.05300 1.14997 0.94770 1.25452 0.95615 1.00641 0.95320 1.69964 1.22068 1.39490 1.23326 0.85823 0.77627 0.80338 0.79158 1.19757 1.19283 1.21141 1.20154 1.02531 0.86463 0.87270 1.21162 0.95319 0.96528 1.02721 1.21730 0.98641 0.94010 0.95027 1.22460 0.99765 0.95972 1.00215 1.23393 0.88125 1.00368 0.94464 1.67738 1.36394 1.03683 1.13667 1.22669 0.96086 0.92208 0.94187 1.16797 0.79907 0.87048 0.83641 1.90846 1.57111 1.68476 1.31851 0.88260 0.89538 0.95440 0.91604 0.84075 0.75578 0.78717 0.84190 0.95669 0.94863 0.92169 0.89307 0.90594 0.85305 0.81391 0.79264 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 10.24 71.98 0.74 -2.22 16 2 C 0.08 1.78 6.04 86.38 0.52 2.30 16 3 N -0.49 -14.65 2.58 -649.71 -1.67 -16.32 16 4 C 0.16 3.14 10.25 83.56 0.86 3.99 16 5 C -0.24 -5.04 9.99 21.99 0.22 -4.82 16 6 C 0.03 1.03 8.80 22.83 0.20 1.23 16 7 C -0.29 -12.59 4.21 -19.79 -0.08 -12.67 16 8 C 0.58 28.50 6.67 86.56 0.58 29.08 16 9 O -0.59 -30.73 16.57 -4.17 -0.07 -30.80 16 10 N -0.59 -27.64 2.44 -834.78 -2.04 -29.67 16 11 C 0.26 13.36 5.12 85.63 0.44 13.80 16 12 C -0.54 -31.13 9.38 25.60 0.24 -30.89 16 13 H 0.03 2.10 7.81 -2.91 -0.02 2.08 16 14 C 0.03 1.70 5.46 84.66 0.46 2.16 16 15 N -0.91 -50.67 13.29 21.45 0.28 -50.38 16 16 Si 0.94 44.73 29.54 68.60 2.03 46.76 16 17 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 20 C 0.16 6.60 5.62 85.63 0.48 7.08 16 21 C -0.15 -5.50 5.48 -19.77 -0.11 -5.61 16 22 C -0.07 -2.12 9.86 22.47 0.22 -1.90 16 23 C -0.16 -3.97 10.11 22.36 0.23 -3.75 16 24 C 0.09 2.32 11.18 84.69 0.95 3.26 16 25 N -0.51 -16.19 10.36 -195.84 -2.03 -18.21 16 26 C 0.10 3.67 10.86 84.67 0.92 4.59 16 27 C 0.52 23.02 7.44 85.16 0.63 23.65 16 28 O -0.60 -32.16 16.11 -4.95 -0.08 -32.24 16 29 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.03 0.72 8.14 -2.39 -0.02 0.71 16 32 H 0.07 2.03 7.38 -2.39 -0.02 2.01 16 33 H 0.14 1.80 8.00 -2.39 -0.02 1.78 16 34 H 0.23 1.31 8.02 -2.91 -0.02 1.29 16 35 H 0.20 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 37 H 0.03 1.32 8.11 -2.39 -0.02 1.30 16 38 H 0.03 1.74 5.77 -2.38 -0.01 1.73 16 39 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 40 H 0.09 3.64 8.02 -2.39 -0.02 3.63 16 41 H 0.08 3.22 7.31 -2.39 -0.02 3.21 16 42 H 0.13 4.24 7.97 -2.91 -0.02 4.21 16 43 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 44 H 0.19 3.09 8.06 -2.91 -0.02 3.07 16 45 H 0.15 5.30 8.06 -2.91 -0.02 5.27 16 Total: -1.00 -87.64 390.30 4.91 -82.73 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 1.00 Total: 18.86 kcal Atomic # 6 Polarization: 21.80 SS G_CDS: 7.49 Total: 29.29 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -5.45 Total: -114.60 kcal Atomic # 8 Polarization: -62.89 SS G_CDS: -0.15 Total: -63.04 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -87.64 4.91 -82.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194471635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.364 kcal (2) G-P(sol) polarization free energy of solvation -87.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds