Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47235 * 2 1 4 4 C 1.35927 * 117.00024 * 179.97438 * 3 2 1 5 5 C 1.38854 * 120.40123 * 359.72753 * 4 3 2 6 6 N 1.31886 * 120.99670 * 179.70255 * 5 4 3 7 7 C 1.31686 * 121.93980 * 0.58544 * 6 5 4 8 8 C 1.39530 * 120.69055 * 359.70515 * 7 6 5 9 9 C 1.47852 * 120.52756 * 180.02562 * 8 7 6 10 10 O 1.21556 * 119.99753 * 132.05210 * 9 8 7 11 11 N 1.34770 * 120.00119 * 312.04667 * 9 8 7 12 12 C 1.46495 * 120.00050 * 4.96036 * 11 9 8 13 13 C 1.50698 * 109.47368 * 95.82161 * 12 11 9 14 14 H 1.08003 * 120.00003 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00251 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99927 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99883 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47278 * 60.00363 * 17 15 13 19 19 H 1.48509 * 109.47047 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47384 * 299.99938 * 17 15 13 21 21 C 1.46500 * 119.99751 * 184.95887 * 11 9 8 22 22 C 1.50699 * 109.47390 * 90.00611 * 21 11 9 23 23 C 1.38679 * 120.41221 * 269.71899 * 22 21 11 24 24 C 1.38628 * 118.41665 * 179.77674 * 23 22 21 25 25 C 1.38225 * 119.16149 * 0.51935 * 24 23 22 26 26 N 1.31856 * 120.76589 * 359.71980 * 25 24 23 27 27 C 1.31891 * 121.72184 * 0.02562 * 26 25 24 28 28 C 1.38833 * 120.40837 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47079 * 299.99943 * 1 2 3 30 30 H 1.09002 * 109.47010 * 59.99516 * 1 2 3 31 31 H 1.08993 * 109.47460 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47010 * 120.00484 * 2 1 3 33 33 H 1.09002 * 109.47079 * 240.00057 * 2 1 3 34 34 H 1.08001 * 119.50653 * 359.97438 * 5 4 3 35 35 H 1.07991 * 119.65403 * 179.72686 * 7 6 5 36 36 H 1.09003 * 109.47075 * 215.82116 * 12 11 9 37 37 H 1.08998 * 109.47355 * 335.82070 * 12 11 9 38 38 H 0.97007 * 119.99961 * 180.02562 * 16 15 13 39 39 H 1.09007 * 109.46925 * 210.00225 * 21 11 9 40 40 H 1.09003 * 109.47652 * 329.99778 * 21 11 9 41 41 H 1.07991 * 120.79012 * 0.02562 * 23 22 21 42 42 H 1.08004 * 120.42090 * 180.21552 * 24 23 22 43 43 H 1.07996 * 119.62092 * 179.74163 * 25 24 23 44 44 H 1.07995 * 119.61266 * 180.02562 * 27 26 25 45 45 H 1.08005 * 120.88024 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3539 1.5253 0.0005 5 6 4.2074 0.4301 0.0068 6 7 5.5166 0.5892 0.0015 7 6 6.0733 1.7826 0.0016 8 6 5.2871 2.9353 0.0012 9 6 5.9159 4.2734 0.0007 10 8 5.5363 5.1231 -0.7812 11 7 6.9100 4.5511 0.8674 12 6 7.4415 3.4969 1.7346 13 6 8.6707 2.8976 1.1015 14 1 9.0208 3.2650 0.1481 15 6 9.3484 1.8803 1.7392 16 7 8.9219 1.4325 2.8999 17 14 10.8717 1.1370 0.9539 18 1 11.8996 2.1930 0.7706 19 1 11.4106 0.0683 1.8331 20 1 10.5157 0.5582 -0.3665 21 6 7.4590 5.9073 0.9421 22 6 6.6881 6.7060 1.9613 23 6 5.5724 7.4373 1.5822 24 6 4.8915 8.1533 2.5545 25 6 5.3502 8.1235 3.8581 26 7 6.4180 7.4207 4.1815 27 6 7.0874 6.7238 3.2839 28 6 3.8937 2.8044 0.0011 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.7930 -0.5672 0.0116 35 1 7.1497 1.8701 0.0016 36 1 7.7024 3.9211 2.7042 37 1 6.6870 2.7216 1.8684 38 1 9.3990 0.7170 3.3487 39 1 8.5076 5.8590 1.2359 40 1 7.3768 6.3869 -0.0333 41 1 5.2397 7.4456 0.5549 42 1 4.0164 8.7312 2.2959 43 1 4.8278 8.6819 4.6207 44 1 7.9573 6.1598 3.5865 45 1 3.2552 3.6755 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197611161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = 2.344613 kcal Electronic energy + Delta-G solvation = -29475.645150 eV Core-core repulsion = 25458.834476 eV Total energy + Delta-G solvation = -4016.810674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.60724 -40.00733 -39.02621 -37.67732 -35.42501 -33.24913 -32.54979 -32.24200 -31.72032 -31.08776 -29.64565 -27.64291 -26.40975 -24.57759 -23.47684 -23.05160 -22.99715 -22.58406 -21.57972 -19.33921 -17.72917 -17.03771 -16.96132 -16.56287 -16.41462 -16.19885 -16.08526 -15.64596 -15.47170 -15.07367 -14.51416 -14.17656 -13.96247 -13.66365 -13.49320 -13.10762 -12.93526 -12.90352 -12.78251 -12.74575 -12.47858 -12.40036 -12.27733 -11.81500 -11.67998 -11.34505 -11.19568 -11.04556 -10.99030 -10.75764 -10.31845 -9.95860 -9.78717 -9.57185 -9.31841 -9.26004 -9.00327 -8.78213 -8.63052 -8.10712 -7.94977 -6.28512 -4.38964 1.14196 1.27005 1.49207 1.63158 3.00199 3.22029 3.25407 3.27892 3.32136 3.68720 4.13159 4.18830 4.27963 4.64761 4.70779 4.75592 4.76098 4.95518 4.99619 5.04233 5.07140 5.12315 5.17871 5.23763 5.27266 5.31511 5.39982 5.50549 5.59676 5.62902 5.81638 5.85066 5.85658 6.02927 6.12692 6.17755 6.31721 6.44014 6.50915 6.58916 6.90824 6.95903 7.08084 7.32407 7.36616 7.63746 7.89902 8.08479 8.16714 8.33372 8.60997 8.76780 9.29673 10.77112 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.006744 B = 0.004925 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4151.003470 B = 5683.403917 C = 8795.088094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.314 6.314 4 C 0.055 3.945 5 C 0.030 3.970 6 N -0.452 5.452 7 C 0.118 3.882 8 C -0.138 4.138 9 C 0.567 3.433 10 O -0.560 6.560 11 N -0.581 5.581 12 C 0.230 3.770 13 C -0.555 4.555 14 H 0.067 0.933 15 C 0.075 3.925 16 N -0.876 5.876 17 Si 0.896 3.104 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.161 3.839 22 C -0.147 4.147 23 C -0.058 4.058 24 C -0.181 4.181 25 C 0.091 3.909 26 N -0.489 5.489 27 C 0.117 3.883 28 C -0.066 4.066 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.153 0.847 35 H 0.202 0.798 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.269 0.731 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.150 0.850 44 H 0.159 0.841 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.341 3.005 -2.509 11.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.227 6.227 4 C 0.009 3.991 5 C -0.128 4.128 6 N -0.160 5.160 7 C -0.040 4.040 8 C -0.143 4.143 9 C 0.354 3.646 10 O -0.441 6.441 11 N -0.309 5.309 12 C 0.110 3.890 13 C -0.592 4.592 14 H 0.085 0.915 15 C -0.131 4.131 16 N -0.512 5.512 17 Si 0.723 3.277 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.197 1.197 21 C 0.037 3.963 22 C -0.150 4.150 23 C -0.084 4.084 24 C -0.201 4.201 25 C -0.067 4.067 26 N -0.197 5.197 27 C -0.041 4.041 28 C -0.093 4.093 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.170 0.830 35 H 0.219 0.781 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.155 0.845 42 H 0.148 0.852 43 H 0.167 0.833 44 H 0.176 0.824 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.833 2.682 -1.858 11.314 hybrid contribution -0.046 -0.097 -1.010 1.016 sum -10.879 2.585 -2.869 11.544 Atomic orbital electron populations 1.21759 0.92763 1.02750 1.03488 1.22790 0.95878 0.82124 1.01584 1.86043 1.18322 1.29100 1.89253 1.19726 0.83414 0.94856 1.01143 1.23077 0.90146 0.97871 1.01701 1.67741 1.10988 1.26731 1.10587 1.24355 1.03452 0.85202 0.90954 1.20808 0.93399 0.95984 1.04122 1.17997 0.79758 0.86258 0.80584 1.90682 1.64579 1.48620 1.40241 1.48154 1.34143 1.10377 1.38250 1.19709 0.94676 0.84985 0.89630 1.21371 1.11285 1.19637 1.06954 0.91529 1.24940 0.97448 0.96085 0.94588 1.69909 1.39672 1.27041 1.14567 0.86575 0.82650 0.78941 0.79553 1.19994 1.21040 1.19691 1.20176 0.96938 0.81785 0.97398 1.21416 0.97845 0.98817 0.96933 1.21663 0.93163 0.93215 1.00381 1.22104 1.01557 1.01829 0.94614 1.22707 0.92972 0.95991 0.94994 1.67718 1.07319 1.07207 1.37486 1.22832 0.98317 0.94344 0.88568 1.20742 0.93604 0.95545 0.99369 0.91526 0.91572 0.90402 0.91852 0.91945 0.82981 0.78145 0.94411 0.93798 0.92119 0.88481 0.89444 0.84510 0.85223 0.83269 0.82382 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.05 0.52 5.47 37.16 0.20 0.72 16 3 O -0.31 -4.45 10.15 -19.51 -0.20 -4.65 16 4 C 0.06 0.91 6.70 -39.13 -0.26 0.64 16 5 C 0.03 0.49 10.21 -17.30 -0.18 0.32 16 6 N -0.45 -8.97 10.34 -12.79 -0.13 -9.10 16 7 C 0.12 2.46 8.69 -17.13 -0.15 2.31 16 8 C -0.14 -2.74 4.97 -104.84 -0.52 -3.26 16 9 C 0.57 11.55 7.27 -12.33 -0.09 11.46 16 10 O -0.56 -11.90 16.48 5.32 0.09 -11.82 16 11 N -0.58 -11.50 2.44 -177.55 -0.43 -11.93 16 12 C 0.23 5.13 4.67 -5.20 -0.02 5.11 16 13 C -0.55 -13.21 6.86 -34.44 -0.24 -13.44 16 14 H 0.07 1.58 7.81 -52.48 -0.41 1.17 16 15 C 0.08 1.87 5.46 -17.82 -0.10 1.77 16 16 N -0.88 -23.01 13.29 55.43 0.74 -22.28 16 17 Si 0.90 19.60 29.54 -169.99 -5.02 14.58 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 C 0.16 2.74 5.61 -5.19 -0.03 2.71 16 22 C -0.15 -2.37 5.48 -104.48 -0.57 -2.94 16 23 C -0.06 -0.86 9.86 -39.27 -0.39 -1.25 16 24 C -0.18 -2.35 10.11 -39.44 -0.40 -2.74 16 25 C 0.09 1.23 11.18 -17.55 -0.20 1.03 16 26 N -0.49 -7.92 10.36 -13.26 -0.14 -8.06 16 27 C 0.12 1.91 10.86 -17.55 -0.19 1.72 16 28 C -0.07 -1.17 9.83 -38.72 -0.38 -1.55 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 33 H 0.06 0.56 7.69 -51.93 -0.40 0.16 16 34 H 0.15 1.99 6.30 -52.49 -0.33 1.66 16 35 H 0.20 4.56 4.74 -52.49 -0.25 4.31 16 36 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 37 H 0.04 1.07 5.39 -51.93 -0.28 0.79 16 38 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.10 1.58 8.02 -51.93 -0.42 1.17 16 40 H 0.09 1.45 7.31 -51.93 -0.38 1.07 16 41 H 0.14 2.02 7.95 -52.49 -0.42 1.60 16 42 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 44 H 0.16 2.52 8.06 -52.49 -0.42 2.10 16 45 H 0.14 2.34 8.06 -52.48 -0.42 1.92 16 LS Contribution 383.39 15.07 5.78 5.78 Total: -1.00 -29.06 383.39 -8.24 -37.31 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -5.80 Total: 8.35 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -3.13 Total: 1.83 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.03 Total: -51.37 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.11 Total: -16.46 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.06 -8.24 -37.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197611161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.651 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds