Wall clock time and date at job start Sat Apr 11 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47235 * 2 1 4 4 C 1.35927 * 117.00024 * 179.97438 * 3 2 1 5 5 C 1.38854 * 120.40123 * 359.72753 * 4 3 2 6 6 N 1.31886 * 120.99670 * 179.70255 * 5 4 3 7 7 C 1.31686 * 121.93980 * 0.58544 * 6 5 4 8 8 C 1.39530 * 120.69055 * 359.70515 * 7 6 5 9 9 C 1.47852 * 120.52756 * 180.02562 * 8 7 6 10 10 O 1.21556 * 119.99753 * 132.05210 * 9 8 7 11 11 N 1.34770 * 120.00119 * 312.04667 * 9 8 7 12 12 C 1.46495 * 120.00050 * 4.96036 * 11 9 8 13 13 C 1.50698 * 109.47368 * 95.82161 * 12 11 9 14 14 H 1.08003 * 120.00003 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00251 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99927 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99883 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47278 * 60.00363 * 17 15 13 19 19 H 1.48509 * 109.47047 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47384 * 299.99938 * 17 15 13 21 21 C 1.46500 * 119.99751 * 184.95887 * 11 9 8 22 22 C 1.50699 * 109.47390 * 90.00611 * 21 11 9 23 23 C 1.38679 * 120.41221 * 269.71899 * 22 21 11 24 24 C 1.38628 * 118.41665 * 179.77674 * 23 22 21 25 25 C 1.38225 * 119.16149 * 0.51935 * 24 23 22 26 26 N 1.31856 * 120.76589 * 359.71980 * 25 24 23 27 27 C 1.31891 * 121.72184 * 0.02562 * 26 25 24 28 28 C 1.38833 * 120.40837 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47079 * 299.99943 * 1 2 3 30 30 H 1.09002 * 109.47010 * 59.99516 * 1 2 3 31 31 H 1.08993 * 109.47460 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47010 * 120.00484 * 2 1 3 33 33 H 1.09002 * 109.47079 * 240.00057 * 2 1 3 34 34 H 1.08001 * 119.50653 * 359.97438 * 5 4 3 35 35 H 1.07991 * 119.65403 * 179.72686 * 7 6 5 36 36 H 1.09003 * 109.47075 * 215.82116 * 12 11 9 37 37 H 1.08998 * 109.47355 * 335.82070 * 12 11 9 38 38 H 0.97007 * 119.99961 * 180.02562 * 16 15 13 39 39 H 1.09007 * 109.46925 * 210.00225 * 21 11 9 40 40 H 1.09003 * 109.47652 * 329.99778 * 21 11 9 41 41 H 1.07991 * 120.79012 * 0.02562 * 23 22 21 42 42 H 1.08004 * 120.42090 * 180.21552 * 24 23 22 43 43 H 1.07996 * 119.62092 * 179.74163 * 25 24 23 44 44 H 1.07995 * 119.61266 * 180.02562 * 27 26 25 45 45 H 1.08005 * 120.88024 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3539 1.5253 0.0005 5 6 4.2074 0.4301 0.0068 6 7 5.5166 0.5892 0.0015 7 6 6.0733 1.7826 0.0016 8 6 5.2871 2.9353 0.0012 9 6 5.9159 4.2734 0.0007 10 8 5.5363 5.1231 -0.7812 11 7 6.9100 4.5511 0.8674 12 6 7.4415 3.4969 1.7346 13 6 8.6707 2.8976 1.1015 14 1 9.0208 3.2650 0.1481 15 6 9.3484 1.8803 1.7392 16 7 8.9219 1.4325 2.8999 17 14 10.8717 1.1370 0.9539 18 1 11.8996 2.1930 0.7706 19 1 11.4106 0.0683 1.8331 20 1 10.5157 0.5582 -0.3665 21 6 7.4590 5.9073 0.9421 22 6 6.6881 6.7060 1.9613 23 6 5.5724 7.4373 1.5822 24 6 4.8915 8.1533 2.5545 25 6 5.3502 8.1235 3.8581 26 7 6.4180 7.4207 4.1815 27 6 7.0874 6.7238 3.2839 28 6 3.8937 2.8044 0.0011 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.7930 -0.5672 0.0116 35 1 7.1497 1.8701 0.0016 36 1 7.7024 3.9211 2.7042 37 1 6.6870 2.7216 1.8684 38 1 9.3990 0.7170 3.3487 39 1 8.5076 5.8590 1.2359 40 1 7.3768 6.3869 -0.0333 41 1 5.2397 7.4456 0.5549 42 1 4.0164 8.7312 2.2959 43 1 4.8278 8.6819 4.6207 44 1 7.9573 6.1598 3.5865 45 1 3.2552 3.6755 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197611161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:03 Heat of formation + Delta-G solvation = -14.188903 kcal Electronic energy + Delta-G solvation = -29476.362098 eV Core-core repulsion = 25458.834476 eV Total energy + Delta-G solvation = -4017.527621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.01652 -41.23023 -40.39264 -38.98905 -37.04899 -34.90442 -33.92274 -33.54809 -32.86056 -32.26194 -30.90040 -29.40169 -27.81669 -25.82860 -24.99537 -24.47731 -24.31419 -23.73769 -22.78613 -20.74569 -19.12516 -18.70731 -18.34796 -17.91263 -17.79561 -17.40640 -17.22579 -17.12950 -16.86132 -16.43710 -16.23681 -15.50563 -15.15579 -14.85603 -14.77433 -14.50862 -14.29287 -14.21098 -14.17733 -13.94448 -13.87237 -13.55505 -13.38080 -13.20554 -13.07055 -12.78050 -12.64862 -12.47091 -12.39016 -12.09606 -11.84795 -11.76330 -11.36345 -10.78341 -10.76734 -10.63095 -10.46330 -10.37703 -9.98137 -9.59208 -9.45366 -8.20293 -6.34960 -0.29216 0.10678 0.20581 0.32361 1.46171 1.48110 1.53810 1.60077 1.94766 2.28594 2.44069 2.73213 2.93200 3.09689 3.38084 3.50507 3.53595 3.70501 3.85577 3.88212 3.91803 4.03036 4.06266 4.08883 4.10208 4.22954 4.35723 4.38872 4.47093 4.66536 4.74120 4.77288 4.81599 4.83472 4.86548 4.95644 5.04704 5.17569 5.20447 5.24787 5.35349 5.45940 5.60983 5.73282 5.77214 6.01514 6.18935 6.40331 6.76156 6.87963 7.00749 7.09768 7.36711 8.84956 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.006744 B = 0.004925 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4151.003470 B = 5683.403917 C = 8795.088094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.036 3.964 3 O -0.319 6.319 4 C 0.072 3.928 5 C 0.034 3.966 6 N -0.473 5.473 7 C 0.099 3.901 8 C -0.152 4.152 9 C 0.566 3.434 10 O -0.572 6.572 11 N -0.580 5.580 12 C 0.249 3.751 13 C -0.549 4.549 14 H 0.064 0.936 15 C 0.036 3.964 16 N -0.909 5.909 17 Si 0.949 3.051 18 H -0.268 1.268 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.161 3.839 22 C -0.157 4.157 23 C -0.066 4.066 24 C -0.169 4.169 25 C 0.090 3.910 26 N -0.511 5.511 27 C 0.102 3.898 28 C -0.074 4.074 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.190 0.810 35 H 0.177 0.823 36 H 0.022 0.978 37 H 0.026 0.974 38 H 0.268 0.732 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.137 0.863 42 H 0.167 0.833 43 H 0.186 0.814 44 H 0.150 0.850 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.460 3.010 -2.860 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.038 4.038 3 O -0.232 6.232 4 C 0.025 3.975 5 C -0.124 4.124 6 N -0.182 5.182 7 C -0.058 4.058 8 C -0.157 4.157 9 C 0.353 3.647 10 O -0.454 6.454 11 N -0.308 5.308 12 C 0.129 3.871 13 C -0.587 4.587 14 H 0.082 0.918 15 C -0.167 4.167 16 N -0.546 5.546 17 Si 0.775 3.225 18 H -0.193 1.193 19 H -0.211 1.211 20 H -0.197 1.197 21 C 0.038 3.962 22 C -0.161 4.161 23 C -0.092 4.092 24 C -0.188 4.188 25 C -0.067 4.067 26 N -0.220 5.220 27 C -0.055 4.055 28 C -0.101 4.101 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.207 0.793 35 H 0.194 0.806 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.155 0.845 42 H 0.185 0.815 43 H 0.203 0.797 44 H 0.167 0.833 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.943 2.707 -2.220 13.408 hybrid contribution 0.396 -0.107 -0.905 0.994 sum -12.547 2.600 -3.125 13.190 Atomic orbital electron populations 1.21800 0.90852 1.04422 1.03289 1.23244 0.97439 0.80259 1.02849 1.86075 1.16590 1.31968 1.88545 1.19673 0.84597 0.94104 0.99153 1.23605 0.88991 0.99670 1.00154 1.67680 1.12840 1.26327 1.11337 1.23877 1.02554 0.86160 0.93198 1.20756 0.94339 0.95241 1.05338 1.18132 0.79671 0.86522 0.80339 1.90656 1.64996 1.49115 1.40622 1.48109 1.34078 1.10935 1.37706 1.19285 0.93717 0.84966 0.89173 1.21510 1.11372 1.19304 1.06552 0.91830 1.25556 0.99749 0.96501 0.94896 1.70008 1.40948 1.27794 1.15862 0.85732 0.79946 0.78269 0.78581 1.19275 1.21082 1.19656 1.20258 0.97193 0.80627 0.98103 1.21257 0.98701 0.99643 0.96454 1.21790 0.92957 0.93463 1.01024 1.22473 1.01895 1.00712 0.93722 1.23352 0.92001 0.95070 0.96303 1.67724 1.08549 1.07983 1.37741 1.22741 0.98702 0.95132 0.88901 1.20876 0.92879 0.96837 0.99459 0.91877 0.91647 0.87774 0.90804 0.90390 0.79320 0.80623 0.95994 0.95592 0.92297 0.88436 0.89060 0.84491 0.81530 0.79723 0.83292 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 71.98 0.74 -1.08 16 2 C 0.04 0.62 5.47 71.98 0.39 1.01 16 3 O -0.32 -8.29 10.15 -92.72 -0.94 -9.23 16 4 C 0.07 2.26 6.70 22.56 0.15 2.41 16 5 C 0.03 1.07 10.21 84.83 0.87 1.94 16 6 N -0.47 -18.82 10.34 -194.39 -2.01 -20.83 16 7 C 0.10 4.26 8.69 85.03 0.74 5.00 16 8 C -0.15 -6.15 4.97 -20.01 -0.10 -6.25 16 9 C 0.57 23.62 7.27 86.79 0.63 24.25 16 10 O -0.57 -24.54 16.48 -3.89 -0.06 -24.60 16 11 N -0.58 -23.81 2.44 -833.92 -2.04 -25.85 16 12 C 0.25 11.65 4.67 85.63 0.40 12.05 16 13 C -0.55 -27.05 6.86 25.60 0.18 -26.88 16 14 H 0.06 3.12 7.81 -2.91 -0.02 3.09 16 15 C 0.04 1.80 5.46 84.65 0.46 2.27 16 16 N -0.91 -49.09 13.29 21.45 0.28 -48.81 16 17 Si 0.95 40.80 29.54 68.60 2.03 42.83 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 C 0.16 5.66 5.61 85.63 0.48 6.15 16 22 C -0.16 -5.14 5.48 -19.77 -0.11 -5.25 16 23 C -0.07 -1.90 9.86 22.47 0.22 -1.68 16 24 C -0.17 -3.94 10.11 22.36 0.23 -3.71 16 25 C 0.09 2.24 11.18 84.69 0.95 3.18 16 26 N -0.51 -16.30 10.36 -195.85 -2.03 -18.33 16 27 C 0.10 3.42 10.86 84.67 0.92 4.33 16 28 C -0.07 -2.60 9.83 22.83 0.22 -2.38 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 33 H 0.08 1.13 7.69 -2.39 -0.02 1.11 16 34 H 0.19 4.38 6.30 -2.91 -0.02 4.36 16 35 H 0.18 8.39 4.74 -2.92 -0.01 8.37 16 36 H 0.02 1.09 8.11 -2.39 -0.02 1.07 16 37 H 0.03 1.33 5.39 -2.39 -0.01 1.32 16 38 H 0.27 13.91 8.31 -92.70 -0.77 13.14 16 39 H 0.10 3.34 8.02 -2.38 -0.02 3.32 16 40 H 0.09 3.11 7.31 -2.39 -0.02 3.09 16 41 H 0.14 3.93 7.95 -2.92 -0.02 3.91 16 42 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 43 H 0.19 3.16 8.06 -2.91 -0.02 3.14 16 44 H 0.15 5.08 8.06 -2.91 -0.02 5.06 16 45 H 0.15 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -63.88 383.39 3.62 -60.26 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 1.01 Total: 29.19 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 7.37 Total: 15.36 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -5.79 Total: -113.82 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -1.01 Total: -33.83 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -63.88 3.62 -60.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197611161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.073 kcal (2) G-P(sol) polarization free energy of solvation -63.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds