Wall clock time and date at job start Sat Apr 11 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35492 * 126.98499 * 2 1 4 4 N 1.30516 * 107.30942 * 180.22214 * 3 2 1 5 5 N 1.28592 * 109.67174 * 359.77435 * 4 3 2 6 6 C 1.30519 * 109.67459 * 359.97438 * 5 4 3 7 7 C 1.50708 * 126.34648 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47006 * 90.02995 * 7 6 5 9 9 C 1.46717 * 124.33528 * 270.00059 * 8 7 6 10 10 C 1.54456 * 105.61036 * 162.78263 * 9 8 7 11 11 F 1.39897 * 114.10281 * 148.18811 * 10 9 8 12 12 C 1.53687 * 108.86749 * 275.86344 * 10 9 8 13 13 N 1.47028 * 108.04370 * 124.15220 * 12 10 9 14 14 C 1.46895 * 110.99796 * 123.61015 * 13 12 10 15 15 C 1.50706 * 109.47182 * 170.00088 * 14 13 12 16 16 H 1.08005 * 119.99758 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47483 * 269.99808 * 19 17 15 21 21 H 1.48499 * 109.47134 * 30.00322 * 19 17 15 22 22 H 1.48507 * 109.46904 * 150.00145 * 19 17 15 23 23 C 1.47147 * 109.21866 * 0.90403 * 13 12 10 24 24 C 1.53843 * 106.75459 * 341.74789 * 23 13 12 25 25 F 1.39904 * 113.19341 * 150.37172 * 24 23 13 26 26 C 1.34374 * 124.34008 * 89.97042 * 8 7 6 27 27 O 1.21283 * 124.86700 * 0.38685 * 26 8 7 28 28 H 1.08997 * 109.47477 * 270.16129 * 1 2 3 29 29 H 1.09001 * 109.46659 * 30.15839 * 1 2 3 30 30 H 1.08995 * 109.47161 * 150.15351 * 1 2 3 31 31 H 1.07997 * 126.34363 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.46889 * 330.02949 * 7 6 5 33 33 H 1.09002 * 109.46932 * 210.02746 * 7 6 5 34 34 H 1.09000 * 110.22031 * 43.75072 * 9 8 7 35 35 H 1.09001 * 110.21963 * 281.81481 * 9 8 7 36 36 H 1.08999 * 109.75649 * 4.50022 * 12 10 9 37 37 H 1.09004 * 109.75669 * 243.80628 * 12 10 9 38 38 H 1.09001 * 109.47613 * 50.00434 * 14 13 12 39 39 H 1.09006 * 109.47521 * 290.00051 * 14 13 12 40 40 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 41 41 H 1.08997 * 110.00090 * 101.07175 * 23 13 12 42 42 H 1.09001 * 110.00459 * 222.42133 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 -0.0048 5 7 3.5090 -0.6431 -0.0031 6 6 2.2800 -1.0824 0.0035 7 6 1.8476 -2.5261 0.0071 8 7 1.7137 -2.9923 1.3894 9 6 2.7986 -3.6033 2.1654 10 6 2.3508 -3.5220 3.6414 11 9 2.8087 -4.5782 4.4363 12 6 2.7202 -2.1377 4.1973 13 7 1.4956 -1.5163 4.7228 14 6 1.6582 -1.1443 6.1345 15 6 0.4894 -0.2978 6.5687 16 1 -0.2958 -0.0603 5.8662 17 6 0.4226 0.1735 7.8627 18 7 1.3790 -0.1152 8.7179 19 14 -1.0258 1.2234 8.4006 20 1 -0.7161 2.6555 8.1588 21 1 -2.2313 0.8395 7.6230 22 1 -1.2815 1.0099 9.8478 23 6 0.3680 -2.4455 4.5488 24 6 0.8025 -3.4776 3.4939 25 9 0.2032 -4.7297 3.6686 26 6 0.5817 -2.9147 2.1093 27 8 -0.4667 -2.4579 1.7056 28 1 -0.3634 0.0029 1.0276 29 1 -0.3633 0.8886 -0.5163 30 1 -0.3633 -0.8913 -0.5114 31 1 1.9703 2.1169 -0.0004 32 1 2.5935 -3.1301 -0.5095 33 1 0.8884 -2.6193 -0.5023 34 1 3.7246 -3.0466 2.0215 35 1 2.9338 -4.6437 1.8695 36 1 3.1345 -1.5194 3.4009 37 1 3.4517 -2.2454 4.9983 38 1 2.5818 -0.5787 6.2572 39 1 1.7005 -2.0461 6.7454 40 1 2.1313 -0.6601 8.4384 41 1 0.1484 -2.9460 5.4918 42 1 -0.5113 -1.9037 4.2003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:25 Heat of formation + Delta-G solvation = -14.887504 kcal Electronic energy + Delta-G solvation = -31782.127247 eV Core-core repulsion = 27242.632553 eV Total energy + Delta-G solvation = -4539.494694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.46464 -47.45998 -43.27152 -40.89233 -37.82473 -36.56134 -35.20433 -33.61925 -32.42912 -30.37509 -29.67912 -27.97135 -27.51605 -26.43600 -25.45304 -23.22262 -22.54516 -21.78337 -21.21154 -20.95304 -20.05930 -17.88031 -17.29063 -17.23539 -16.81347 -16.66948 -16.34502 -15.86380 -15.44545 -15.35882 -15.26598 -15.13466 -14.48944 -14.33435 -13.96089 -13.90657 -13.75238 -13.63218 -13.53598 -13.16540 -13.11344 -12.96732 -12.81214 -12.45388 -12.27611 -11.78581 -11.70708 -11.40489 -11.16874 -10.83052 -10.72513 -10.58778 -10.53457 -10.32485 -10.15665 -10.00209 -9.51586 -9.31747 -8.82605 -8.49411 -7.78854 -6.48146 -4.19024 1.42727 1.99556 2.32161 2.37479 2.86311 3.33630 3.39106 3.42115 3.47081 3.58111 3.67164 3.94234 4.04083 4.18128 4.33370 4.43635 4.46912 4.52415 4.56506 4.70573 4.80160 4.98766 5.09615 5.12254 5.24204 5.28562 5.34397 5.35138 5.64392 5.69089 5.78421 5.85127 5.91137 5.94107 6.15939 6.42130 6.62014 6.63182 6.77119 7.39193 7.52926 7.58313 8.05897 8.41492 8.55535 8.73098 9.51825 10.91200 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.010554 B = 0.004570 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.419688 B = 6125.786306 C = 7286.382705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.460 5.460 3 C 0.160 3.840 4 N -0.297 5.297 5 N -0.279 5.279 6 C 0.143 3.857 7 C 0.219 3.781 8 N -0.603 5.603 9 C 0.093 3.907 10 C 0.070 3.930 11 F -0.165 7.165 12 C 0.030 3.970 13 N -0.508 5.508 14 C 0.178 3.822 15 C -0.594 4.594 16 H 0.058 0.942 17 C 0.018 3.982 18 N -0.909 5.909 19 Si 1.075 2.925 20 H -0.287 1.287 21 H -0.288 1.288 22 H -0.284 1.284 23 C 0.056 3.944 24 C 0.059 3.941 25 F -0.161 7.161 26 C 0.534 3.466 27 O -0.493 6.493 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.219 0.781 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.028 0.972 39 H -0.010 1.010 40 H 0.267 0.733 41 H 0.077 0.923 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.207 -5.351 -19.657 20.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.150 5.150 3 C -0.128 4.128 4 N -0.137 5.137 5 N -0.122 5.122 6 C -0.125 4.125 7 C 0.095 3.905 8 N -0.338 5.338 9 C -0.030 4.030 10 C 0.049 3.951 11 F -0.144 7.144 12 C -0.099 4.099 13 N -0.233 5.233 14 C 0.053 3.947 15 C -0.632 4.632 16 H 0.076 0.924 17 C -0.187 4.187 18 N -0.545 5.545 19 Si 0.903 3.097 20 H -0.213 1.213 21 H -0.214 1.214 22 H -0.209 1.209 23 C -0.073 4.073 24 C 0.036 3.964 25 F -0.141 7.141 26 C 0.318 3.682 27 O -0.366 6.366 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.236 0.764 32 H 0.140 0.860 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.008 0.992 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.056 -3.851 -18.899 19.288 hybrid contribution -0.535 -1.627 -0.621 1.822 sum -0.591 -5.478 -19.520 20.283 Atomic orbital electron populations 1.22231 0.74456 1.04705 1.05601 1.46176 1.09668 1.06568 1.52563 1.26492 0.87061 0.95098 1.04133 1.74251 1.18090 1.02963 1.18395 1.74200 1.16807 1.03612 1.17558 1.25106 0.87857 0.92640 1.06929 1.19587 1.03985 0.85212 0.81744 1.48035 1.11795 1.60662 1.13267 1.22603 0.91720 1.00614 0.88106 1.22905 0.92894 0.88332 0.90945 1.92928 1.89382 1.57743 1.74396 1.23357 0.96158 0.88875 1.01516 1.63390 1.00007 1.36035 1.23827 1.20187 0.98803 0.95199 0.80560 1.21911 1.07527 1.34986 0.98775 0.92372 1.25869 1.02092 0.97844 0.92865 1.70782 1.10177 1.36256 1.37319 0.83450 0.74437 0.75819 0.76003 1.21334 1.21362 1.20930 1.22999 0.97149 0.90991 0.96126 1.22765 0.93122 0.83307 0.97253 1.92929 1.84494 1.40454 1.96218 1.20356 0.83583 0.78271 0.85949 1.90698 1.27369 1.44657 1.73861 0.88782 0.89094 0.88976 0.76450 0.85993 0.87566 0.87297 0.88741 0.88830 0.90282 0.95441 0.99240 0.92252 0.90445 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 10.24 59.85 0.61 1.22 16 2 N -0.46 -5.01 3.15 -122.69 -0.39 -5.39 16 3 C 0.16 1.82 12.74 -89.95 -1.15 0.67 16 4 N -0.30 -4.37 12.21 29.69 0.36 -4.00 16 5 N -0.28 -4.00 12.21 32.80 0.40 -3.60 16 6 C 0.14 1.69 7.61 -154.98 -1.18 0.51 16 7 C 0.22 1.97 6.28 -5.19 -0.03 1.94 16 8 N -0.60 -6.93 2.91 -173.93 -0.51 -7.44 16 9 C 0.09 1.01 6.48 -3.16 -0.02 0.99 16 10 C 0.07 1.03 1.92 -88.12 -0.17 0.86 16 11 F -0.16 -2.60 17.08 2.25 0.04 -2.56 16 12 C 0.03 0.51 6.20 -3.40 -0.02 0.48 16 13 N -0.51 -10.56 5.11 -234.76 -1.20 -11.76 16 14 C 0.18 4.43 3.58 -4.98 -0.02 4.41 16 15 C -0.59 -16.37 8.78 -34.44 -0.30 -16.67 16 16 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 17 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 18 N -0.91 -27.15 13.65 55.43 0.76 -26.40 16 19 Si 1.08 24.92 29.90 -169.99 -5.08 19.84 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.06 1.09 5.43 -3.25 -0.02 1.07 16 24 C 0.06 0.96 1.77 -89.76 -0.16 0.80 16 25 F -0.16 -2.70 17.01 2.25 0.04 -2.66 16 26 C 0.53 7.82 7.01 -10.97 -0.08 7.75 16 27 O -0.49 -7.79 15.85 5.55 0.09 -7.70 16 28 H 0.09 1.02 7.62 -51.93 -0.40 0.62 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.68 7.18 -51.93 -0.37 0.31 16 31 H 0.22 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.11 0.80 6.98 -51.93 -0.36 0.44 16 34 H 0.11 1.08 7.67 -51.93 -0.40 0.69 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.53 7.37 -51.93 -0.38 1.15 16 37 H 0.08 1.37 7.50 -51.93 -0.39 0.98 16 38 H 0.03 0.72 7.89 -51.93 -0.41 0.31 16 39 H -0.01 -0.26 7.74 -51.93 -0.40 -0.67 16 40 H 0.27 7.94 7.22 -40.82 -0.29 7.64 16 41 H 0.08 1.63 7.54 -51.93 -0.39 1.24 16 42 H 0.10 2.04 7.69 -51.93 -0.40 1.64 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -34.62 356.52 -7.84 -42.46 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.09 Total: -0.60 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -2.63 Total: 4.44 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.57 Total: -58.60 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.08 Total: -5.22 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.62 -7.84 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.572 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds