Wall clock time and date at job start Sat Apr 11 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35492 * 126.98499 * 2 1 4 4 N 1.30516 * 107.30942 * 180.22214 * 3 2 1 5 5 N 1.28592 * 109.67174 * 359.77435 * 4 3 2 6 6 C 1.30519 * 109.67459 * 359.97438 * 5 4 3 7 7 C 1.50708 * 126.34648 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47006 * 90.02995 * 7 6 5 9 9 C 1.46717 * 124.33528 * 270.00059 * 8 7 6 10 10 C 1.54456 * 105.61036 * 162.78263 * 9 8 7 11 11 F 1.39897 * 114.10281 * 148.18811 * 10 9 8 12 12 C 1.53687 * 108.86749 * 275.86344 * 10 9 8 13 13 N 1.47028 * 108.04370 * 124.15220 * 12 10 9 14 14 C 1.46895 * 110.99796 * 123.61015 * 13 12 10 15 15 C 1.50706 * 109.47182 * 170.00088 * 14 13 12 16 16 H 1.08005 * 119.99758 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47483 * 269.99808 * 19 17 15 21 21 H 1.48499 * 109.47134 * 30.00322 * 19 17 15 22 22 H 1.48507 * 109.46904 * 150.00145 * 19 17 15 23 23 C 1.47147 * 109.21866 * 0.90403 * 13 12 10 24 24 C 1.53843 * 106.75459 * 341.74789 * 23 13 12 25 25 F 1.39904 * 113.19341 * 150.37172 * 24 23 13 26 26 C 1.34374 * 124.34008 * 89.97042 * 8 7 6 27 27 O 1.21283 * 124.86700 * 0.38685 * 26 8 7 28 28 H 1.08997 * 109.47477 * 270.16129 * 1 2 3 29 29 H 1.09001 * 109.46659 * 30.15839 * 1 2 3 30 30 H 1.08995 * 109.47161 * 150.15351 * 1 2 3 31 31 H 1.07997 * 126.34363 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.46889 * 330.02949 * 7 6 5 33 33 H 1.09002 * 109.46932 * 210.02746 * 7 6 5 34 34 H 1.09000 * 110.22031 * 43.75072 * 9 8 7 35 35 H 1.09001 * 110.21963 * 281.81481 * 9 8 7 36 36 H 1.08999 * 109.75649 * 4.50022 * 12 10 9 37 37 H 1.09004 * 109.75669 * 243.80628 * 12 10 9 38 38 H 1.09001 * 109.47613 * 50.00434 * 14 13 12 39 39 H 1.09006 * 109.47521 * 290.00051 * 14 13 12 40 40 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 41 41 H 1.08997 * 110.00090 * 101.07175 * 23 13 12 42 42 H 1.09001 * 110.00459 * 222.42133 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 -0.0048 5 7 3.5090 -0.6431 -0.0031 6 6 2.2800 -1.0824 0.0035 7 6 1.8476 -2.5261 0.0071 8 7 1.7137 -2.9923 1.3894 9 6 2.7986 -3.6033 2.1654 10 6 2.3508 -3.5220 3.6414 11 9 2.8087 -4.5782 4.4363 12 6 2.7202 -2.1377 4.1973 13 7 1.4956 -1.5163 4.7228 14 6 1.6582 -1.1443 6.1345 15 6 0.4894 -0.2978 6.5687 16 1 -0.2958 -0.0603 5.8662 17 6 0.4226 0.1735 7.8627 18 7 1.3790 -0.1152 8.7179 19 14 -1.0258 1.2234 8.4006 20 1 -0.7161 2.6555 8.1588 21 1 -2.2313 0.8395 7.6230 22 1 -1.2815 1.0099 9.8478 23 6 0.3680 -2.4455 4.5488 24 6 0.8025 -3.4776 3.4939 25 9 0.2032 -4.7297 3.6686 26 6 0.5817 -2.9147 2.1093 27 8 -0.4667 -2.4579 1.7056 28 1 -0.3634 0.0029 1.0276 29 1 -0.3633 0.8886 -0.5163 30 1 -0.3633 -0.8913 -0.5114 31 1 1.9703 2.1169 -0.0004 32 1 2.5935 -3.1301 -0.5095 33 1 0.8884 -2.6193 -0.5023 34 1 3.7246 -3.0466 2.0215 35 1 2.9338 -4.6437 1.8695 36 1 3.1345 -1.5194 3.4009 37 1 3.4517 -2.2454 4.9983 38 1 2.5818 -0.5787 6.2572 39 1 1.7005 -2.0461 6.7454 40 1 2.1313 -0.6601 8.4384 41 1 0.1484 -2.9460 5.4918 42 1 -0.5113 -1.9037 4.2003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:24 Heat of formation + Delta-G solvation = -38.005707 kcal Electronic energy + Delta-G solvation = -31783.129727 eV Core-core repulsion = 27242.632553 eV Total energy + Delta-G solvation = -4540.497174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.76103 -48.75141 -44.14740 -42.05869 -39.28027 -37.70996 -36.06719 -35.43040 -33.75632 -31.61819 -31.03692 -29.14721 -28.49618 -27.60893 -26.94760 -25.04880 -23.41816 -23.12488 -22.53408 -22.17585 -21.14260 -19.31963 -18.68840 -18.27400 -18.07188 -17.84306 -17.50961 -16.89059 -16.84142 -16.56379 -16.35743 -16.08134 -15.82758 -15.71722 -15.57268 -15.26164 -15.21171 -14.91531 -14.73826 -14.42072 -14.22413 -14.08441 -13.81494 -13.64355 -13.40982 -13.37126 -13.23392 -12.91959 -12.64874 -12.50923 -12.38097 -11.99042 -11.95715 -11.44326 -11.19796 -11.16003 -10.90521 -10.65401 -10.46093 -10.26455 -9.55955 -8.75960 -6.47884 0.54351 0.87818 1.40236 1.50381 1.58896 1.59315 1.77101 1.92168 2.07389 2.29585 2.47122 2.52111 2.58914 2.89113 3.07874 3.15313 3.19356 3.36143 3.62318 3.84484 3.86152 3.87111 4.13296 4.18542 4.23834 4.28053 4.34775 4.36965 4.41231 4.44485 4.56306 4.61281 4.68735 4.76825 4.85606 4.97841 5.11328 5.41060 5.51524 5.64492 5.85763 5.99183 6.20770 6.46533 6.48765 7.31906 7.65003 8.63705 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.010554 B = 0.004570 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.419688 B = 6125.786306 C = 7286.382705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.463 5.463 3 C 0.164 3.836 4 N -0.342 5.342 5 N -0.309 5.309 6 C 0.142 3.858 7 C 0.217 3.783 8 N -0.591 5.591 9 C 0.102 3.898 10 C 0.073 3.927 11 F -0.170 7.170 12 C 0.029 3.971 13 N -0.515 5.515 14 C 0.192 3.808 15 C -0.603 4.603 16 H 0.053 0.947 17 C -0.032 4.032 18 N -0.933 5.933 19 Si 1.121 2.879 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.282 1.282 23 C 0.057 3.943 24 C 0.056 3.944 25 F -0.164 7.164 26 C 0.534 3.466 27 O -0.507 6.507 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.252 0.748 32 H 0.157 0.843 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.010 0.990 39 H -0.033 1.033 40 H 0.255 0.745 41 H 0.052 0.948 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 -5.522 -22.049 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.153 5.153 3 C -0.125 4.125 4 N -0.182 5.182 5 N -0.150 5.150 6 C -0.128 4.128 7 C 0.094 3.906 8 N -0.324 5.324 9 C -0.021 4.021 10 C 0.053 3.947 11 F -0.150 7.150 12 C -0.099 4.099 13 N -0.239 5.239 14 C 0.066 3.934 15 C -0.641 4.641 16 H 0.072 0.928 17 C -0.230 4.230 18 N -0.570 5.570 19 Si 0.942 3.058 20 H -0.197 1.197 21 H -0.195 1.195 22 H -0.207 1.207 23 C -0.072 4.072 24 C 0.033 3.967 25 F -0.144 7.144 26 C 0.318 3.682 27 O -0.381 6.381 28 H 0.086 0.914 29 H 0.141 0.859 30 H 0.122 0.878 31 H 0.268 0.732 32 H 0.175 0.825 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.028 0.972 39 H -0.015 1.015 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.627 -4.042 -21.336 21.724 hybrid contribution -0.340 -1.577 0.115 1.617 sum -0.968 -5.619 -21.221 21.974 Atomic orbital electron populations 1.22361 0.72989 1.07007 1.04491 1.46397 1.10529 1.06292 1.52032 1.27150 0.86412 0.96572 1.02329 1.74168 1.20052 1.03536 1.20438 1.74104 1.18314 1.03743 1.18882 1.25553 0.87477 0.93829 1.05934 1.20047 1.06232 0.84109 0.80192 1.48026 1.10634 1.59713 1.14027 1.22740 0.91622 1.03159 0.84608 1.22861 0.91859 0.86708 0.93288 1.92920 1.89317 1.57729 1.75018 1.23381 0.94316 0.90661 1.01536 1.63212 1.02086 1.37760 1.20849 1.19843 0.97155 0.93658 0.82793 1.22204 1.08022 1.34966 0.98906 0.92828 1.27376 1.03812 0.98545 0.93243 1.70908 1.10764 1.37424 1.37907 0.82880 0.71990 0.75048 0.75894 1.19652 1.19500 1.20712 1.22820 0.96530 0.91557 0.96305 1.22706 0.93992 0.82333 0.97705 1.92918 1.84674 1.40450 1.96337 1.20001 0.84385 0.78465 0.85369 1.90694 1.28136 1.45433 1.73862 0.91402 0.85885 0.87795 0.73247 0.82508 0.85605 0.85672 0.85008 0.87676 0.90973 0.97182 1.01501 0.93606 0.92970 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 10.24 127.77 1.31 2.35 16 2 N -0.46 -9.05 3.15 -542.08 -1.71 -10.76 16 3 C 0.16 3.43 12.74 180.11 2.30 5.73 16 4 N -0.34 -9.70 12.21 -59.99 -0.73 -10.44 16 5 N -0.31 -8.33 12.21 -50.15 -0.61 -8.94 16 6 C 0.14 2.98 7.61 137.98 1.05 4.03 16 7 C 0.22 3.11 6.28 85.64 0.54 3.64 16 8 N -0.59 -11.75 2.91 -822.80 -2.39 -14.14 16 9 C 0.10 1.87 6.48 86.83 0.56 2.43 16 10 C 0.07 2.07 1.92 -9.17 -0.02 2.06 16 11 F -0.17 -5.18 17.08 44.97 0.77 -4.42 16 12 C 0.03 1.00 6.20 86.51 0.54 1.53 16 13 N -0.52 -21.95 5.11 -896.63 -4.58 -26.53 16 14 C 0.19 9.99 3.58 85.56 0.31 10.29 16 15 C -0.60 -34.13 8.78 25.60 0.22 -33.90 16 16 H 0.05 3.03 7.74 -2.91 -0.02 3.00 16 17 C -0.03 -1.81 5.46 84.65 0.46 -1.35 16 18 N -0.93 -57.10 13.65 21.45 0.29 -56.80 16 19 Si 1.12 50.05 29.90 68.60 2.05 52.10 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 C 0.06 2.28 5.43 86.54 0.47 2.75 16 24 C 0.06 1.79 1.77 -10.24 -0.02 1.77 16 25 F -0.16 -5.37 17.01 44.97 0.77 -4.61 16 26 C 0.53 14.69 7.01 87.84 0.62 15.31 16 27 O -0.51 -15.24 15.85 -3.04 -0.05 -15.29 16 28 H 0.07 1.38 7.62 -2.39 -0.02 1.36 16 29 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 1.23 7.18 -2.39 -0.02 1.22 16 31 H 0.25 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.13 1.38 6.98 -2.39 -0.02 1.36 16 34 H 0.13 2.02 7.67 -2.39 -0.02 2.00 16 35 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.11 3.35 7.37 -2.39 -0.02 3.33 16 37 H 0.07 2.55 7.50 -2.38 -0.02 2.54 16 38 H 0.01 0.56 7.89 -2.39 -0.02 0.54 16 39 H -0.03 -1.82 7.74 -2.38 -0.02 -1.83 16 40 H 0.25 15.77 7.22 -92.71 -0.67 15.10 16 41 H 0.05 2.32 7.54 -2.39 -0.02 2.30 16 42 H 0.09 3.79 7.69 -2.39 -0.02 3.77 16 Total: -1.00 -77.97 356.52 3.30 -74.66 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.17 Total: 8.51 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 8.33 Total: 16.65 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -9.73 Total: -127.60 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.05 Total: -15.29 kcal Atomic # 9 Polarization: -10.55 SS G_CDS: 1.53 Total: -9.02 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.10 kcal Total: -77.97 3.30 -74.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.659 kcal (2) G-P(sol) polarization free energy of solvation -77.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds