Wall clock time and date at job start Sat Apr 11 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38149 * 119.94056 * 179.70430 * 5 4 3 7 7 C 1.38261 * 120.05702 * 0.59118 * 6 5 4 8 8 C 1.50703 * 119.94552 * 179.70844 * 7 6 5 9 9 C 1.53002 * 109.46527 * 269.97627 * 8 7 6 10 10 N 1.46498 * 109.47099 * 179.97438 * 9 8 7 11 11 S 1.65598 * 120.00492 * 164.99772 * 10 9 8 12 12 O 1.42100 * 104.28126 * 181.07092 * 11 10 9 13 13 O 1.42095 * 104.27671 * 308.93103 * 11 10 9 14 14 C 1.81399 * 104.44761 * 64.99939 * 11 10 9 15 15 C 1.53003 * 109.47009 * 180.02562 * 14 11 10 16 16 C 1.52998 * 109.46910 * 180.02562 * 15 14 11 17 17 C 1.50698 * 109.47386 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99786 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00568 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99689 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00228 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46750 * 59.99860 * 21 19 17 23 23 H 1.48493 * 109.46884 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46705 * 300.00063 * 21 19 17 25 25 C 1.38262 * 120.11084 * 359.67801 * 7 6 5 26 26 C 1.38145 * 120.05942 * 0.02720 * 25 7 6 27 27 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 28 28 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 30 30 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 32 32 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 33 33 H 1.07996 * 119.96832 * 180.27565 * 6 5 4 34 34 H 1.08992 * 109.47037 * 29.97091 * 8 7 6 35 35 H 1.08998 * 109.46989 * 149.98043 * 8 7 6 36 36 H 1.09004 * 109.47165 * 299.99904 * 9 8 7 37 37 H 1.08993 * 109.47678 * 59.99781 * 9 8 7 38 38 H 0.97006 * 120.00140 * 345.00034 * 10 9 8 39 39 H 1.08999 * 109.47504 * 300.00336 * 14 11 10 40 40 H 1.09000 * 109.46865 * 60.00380 * 14 11 10 41 41 H 1.08994 * 109.47113 * 299.99979 * 15 14 11 42 42 H 1.09000 * 109.47042 * 60.00433 * 15 14 11 43 43 H 1.09008 * 109.47269 * 300.00119 * 16 15 14 44 44 H 1.08996 * 109.47729 * 59.99879 * 16 15 14 45 45 H 0.97001 * 119.99953 * 179.97438 * 20 19 17 46 46 H 1.08008 * 119.97547 * 180.02562 * 25 7 6 47 47 H 1.08000 * 120.03441 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0012 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0951 2.1527 1.4448 10 7 9.5475 2.3441 1.4455 11 16 10.3194 2.8208 2.8309 12 8 11.6852 2.9252 2.4529 13 8 9.5898 3.9606 3.2640 14 6 10.0809 1.4379 3.9804 15 6 10.7565 1.7615 5.3145 16 6 10.5560 0.5949 6.2839 17 6 11.2208 0.9138 7.5981 18 1 11.7347 1.8547 7.7291 19 6 11.1732 0.0045 8.6335 20 7 10.5471 -1.1410 8.4742 21 14 11.9968 0.4002 10.2628 22 1 11.3930 1.6295 10.8369 23 1 11.8022 -0.7321 11.2036 24 1 13.4492 0.6181 10.0432 25 6 5.2549 2.9853 0.0010 26 6 3.8850 2.8070 0.0005 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7884 -0.5724 0.0117 33 1 6.2281 -0.2456 0.0015 34 1 8.0671 1.2509 -0.5113 35 1 7.8338 3.0155 -0.5117 36 1 7.6180 2.9875 1.9584 37 1 7.8513 1.2229 1.9588 38 1 10.0572 2.1917 0.6343 39 1 9.0147 1.2798 4.1425 40 1 10.5223 0.5348 3.5589 41 1 11.8227 1.9199 5.1528 42 1 10.3148 2.6646 5.7359 43 1 9.4898 0.4361 6.4456 44 1 10.9979 -0.3079 5.8624 45 1 10.5139 -1.7809 9.2024 46 1 5.6690 3.9828 0.0010 47 1 3.2282 3.6644 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309925218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:32 Heat of formation + Delta-G solvation = -114.214859 kcal Electronic energy + Delta-G solvation = -26232.669714 eV Core-core repulsion = 22313.955842 eV Total energy + Delta-G solvation = -3918.713872 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.50347 -38.35425 -36.89335 -35.94327 -35.67430 -34.66105 -32.71371 -32.18125 -31.48958 -31.15026 -27.80537 -27.63327 -24.48612 -23.73227 -23.53368 -22.33031 -21.20062 -20.62397 -19.19121 -18.61511 -17.46189 -16.66631 -16.52508 -16.46219 -16.31291 -15.72777 -15.56339 -15.02115 -14.93778 -14.55287 -14.45493 -14.14097 -13.83855 -13.76130 -13.60250 -13.04678 -12.82080 -12.59095 -12.36377 -12.29879 -12.16138 -11.95473 -11.90150 -11.82555 -11.76336 -11.68681 -11.41784 -11.20489 -11.04458 -10.99348 -10.89416 -10.86717 -10.43460 -9.94213 -9.70526 -9.33024 -9.28691 -9.08489 -8.40252 -8.38678 -6.05464 -4.08503 0.48014 1.04590 1.10065 2.82462 2.86866 3.32388 3.36106 3.39417 3.43528 3.96653 4.39688 4.40061 4.42588 4.47898 4.53336 4.58840 4.60193 4.74842 4.79623 4.83635 5.01550 5.06664 5.13892 5.20534 5.21567 5.28424 5.30927 5.33820 5.42166 5.49383 5.59220 5.59724 5.76527 5.87118 5.91928 5.97780 6.05909 6.27826 6.33964 6.45884 6.46579 6.87239 6.91153 7.08535 7.56997 7.67219 7.92514 8.33117 8.97527 9.56085 11.05726 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.002101 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.396795 B =13321.814121 C =15433.174910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.127 3.873 5 C -0.207 4.207 6 C -0.072 4.072 7 C -0.122 4.122 8 C -0.080 4.080 9 C 0.117 3.883 10 N -1.126 6.126 11 S 2.603 3.397 12 O -0.964 6.964 13 O -0.962 6.962 14 C -0.609 4.609 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.073 4.073 26 C -0.150 4.150 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.414 0.586 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.262 0.738 46 H 0.132 0.868 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.569 2.015 -23.043 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.082 3.918 5 C -0.226 4.226 6 C -0.091 4.091 7 C -0.123 4.123 8 C -0.119 4.119 9 C -0.009 4.009 10 N -0.884 5.884 11 S 2.699 3.301 12 O -0.955 6.955 13 O -0.952 6.952 14 C -0.741 4.741 15 C -0.145 4.145 16 C -0.008 4.008 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.723 3.277 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.091 4.091 26 C -0.169 4.169 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.248 0.752 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.149 0.851 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.446 2.863 -22.684 28.165 hybrid contribution 0.338 -1.015 0.714 1.286 sum -16.109 1.848 -21.970 27.305 Atomic orbital electron populations 1.21780 0.92682 1.02941 1.03561 1.22797 0.95938 0.81909 1.01492 1.86068 1.19122 1.29396 1.88607 1.19029 0.82249 0.94230 0.96329 1.21239 0.94345 0.98068 1.08932 1.20878 0.94296 0.96811 0.97077 1.19642 0.95158 0.93185 1.04278 1.20680 0.91280 1.03631 0.96317 1.21329 0.79410 1.02216 0.97942 1.55722 1.15757 1.88377 1.28567 1.05226 0.73552 0.76873 0.74486 1.93577 1.33730 1.86834 1.81317 1.93565 1.73230 1.46528 1.81888 1.30540 1.10887 1.18896 1.13750 1.21497 0.99067 1.02846 0.91128 1.19057 0.97535 0.91688 0.92483 1.21222 1.34727 1.03104 0.97431 0.92408 1.25025 0.95408 0.95012 0.98964 1.69949 1.42771 1.07958 1.32793 0.86606 0.80040 0.77870 0.83218 1.20114 1.21260 1.20119 1.20928 0.92066 0.98929 0.97156 1.20438 0.95242 0.94845 1.06370 0.91554 0.90306 0.91419 0.92054 0.91858 0.85496 0.85533 0.90248 0.90078 0.89935 0.91491 0.75226 0.85568 0.85324 0.91570 0.91552 0.96153 0.96142 0.92855 0.85050 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 37.16 0.38 -0.35 16 2 C 0.05 0.34 5.46 37.16 0.20 0.54 16 3 O -0.32 -2.98 10.14 -19.41 -0.20 -3.18 16 4 C 0.13 1.22 6.69 -39.21 -0.26 0.95 16 5 C -0.21 -1.77 9.04 -39.43 -0.36 -2.12 16 6 C -0.07 -0.59 9.69 -39.61 -0.38 -0.98 16 7 C -0.12 -1.02 5.13 -104.60 -0.54 -1.55 16 8 C -0.08 -0.59 5.48 -27.88 -0.15 -0.74 16 9 C 0.12 1.07 6.11 -4.04 -0.02 1.05 16 10 N -1.13 -11.32 5.88 -10.61 -0.06 -11.38 16 11 S 2.60 37.15 5.46 -107.50 -0.59 36.57 16 12 O -0.96 -16.61 18.08 -57.54 -1.04 -17.65 16 13 O -0.96 -16.69 17.50 -57.54 -1.01 -17.70 16 14 C -0.61 -9.23 6.07 37.16 0.23 -9.00 16 15 C -0.11 -2.15 5.16 -26.73 -0.14 -2.28 16 16 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 17 C -0.53 -14.88 9.11 -34.44 -0.31 -15.20 16 18 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 21 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 C -0.07 -0.62 9.69 -39.61 -0.38 -1.00 16 26 C -0.15 -1.38 9.99 -39.43 -0.39 -1.77 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.32 7.68 -51.93 -0.40 -0.08 16 31 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 32 H 0.13 0.85 6.30 -52.49 -0.33 0.52 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 36 H 0.08 0.83 7.70 -51.93 -0.40 0.43 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.41 3.30 8.62 -34.46 -0.30 3.01 16 39 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 47 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 405.30 15.07 6.11 6.11 Total: -1.00 -36.28 405.30 -11.14 -47.42 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.70 Total: -0.65 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: -2.37 Total: -30.27 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.67 Total: -37.28 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -2.24 Total: -38.53 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 37.15 SS G_CDS: -0.59 Total: 36.57 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.28 -11.14 -47.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309925218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.791 kcal (2) G-P(sol) polarization free energy of solvation -36.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds