Wall clock time and date at job start Sat Apr 11 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38149 * 119.94056 * 179.70430 * 5 4 3 7 7 C 1.38261 * 120.05702 * 0.59118 * 6 5 4 8 8 C 1.50703 * 119.94552 * 179.70844 * 7 6 5 9 9 C 1.53002 * 109.46527 * 269.97627 * 8 7 6 10 10 N 1.46498 * 109.47099 * 179.97438 * 9 8 7 11 11 S 1.65598 * 120.00492 * 164.99772 * 10 9 8 12 12 O 1.42100 * 104.28126 * 181.07092 * 11 10 9 13 13 O 1.42095 * 104.27671 * 308.93103 * 11 10 9 14 14 C 1.81399 * 104.44761 * 64.99939 * 11 10 9 15 15 C 1.53003 * 109.47009 * 180.02562 * 14 11 10 16 16 C 1.52998 * 109.46910 * 180.02562 * 15 14 11 17 17 C 1.50698 * 109.47386 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99786 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00568 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99689 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00228 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46750 * 59.99860 * 21 19 17 23 23 H 1.48493 * 109.46884 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46705 * 300.00063 * 21 19 17 25 25 C 1.38262 * 120.11084 * 359.67801 * 7 6 5 26 26 C 1.38145 * 120.05942 * 0.02720 * 25 7 6 27 27 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 28 28 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 30 30 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 32 32 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 33 33 H 1.07996 * 119.96832 * 180.27565 * 6 5 4 34 34 H 1.08992 * 109.47037 * 29.97091 * 8 7 6 35 35 H 1.08998 * 109.46989 * 149.98043 * 8 7 6 36 36 H 1.09004 * 109.47165 * 299.99904 * 9 8 7 37 37 H 1.08993 * 109.47678 * 59.99781 * 9 8 7 38 38 H 0.97006 * 120.00140 * 345.00034 * 10 9 8 39 39 H 1.08999 * 109.47504 * 300.00336 * 14 11 10 40 40 H 1.09000 * 109.46865 * 60.00380 * 14 11 10 41 41 H 1.08994 * 109.47113 * 299.99979 * 15 14 11 42 42 H 1.09000 * 109.47042 * 60.00433 * 15 14 11 43 43 H 1.09008 * 109.47269 * 300.00119 * 16 15 14 44 44 H 1.08996 * 109.47729 * 59.99879 * 16 15 14 45 45 H 0.97001 * 119.99953 * 179.97438 * 20 19 17 46 46 H 1.08008 * 119.97547 * 180.02562 * 25 7 6 47 47 H 1.08000 * 120.03441 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0012 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0951 2.1527 1.4448 10 7 9.5475 2.3441 1.4455 11 16 10.3194 2.8208 2.8309 12 8 11.6852 2.9252 2.4529 13 8 9.5898 3.9606 3.2640 14 6 10.0809 1.4379 3.9804 15 6 10.7565 1.7615 5.3145 16 6 10.5560 0.5949 6.2839 17 6 11.2208 0.9138 7.5981 18 1 11.7347 1.8547 7.7291 19 6 11.1732 0.0045 8.6335 20 7 10.5471 -1.1410 8.4742 21 14 11.9968 0.4002 10.2628 22 1 11.3930 1.6295 10.8369 23 1 11.8022 -0.7321 11.2036 24 1 13.4492 0.6181 10.0432 25 6 5.2549 2.9853 0.0010 26 6 3.8850 2.8070 0.0005 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7884 -0.5724 0.0117 33 1 6.2281 -0.2456 0.0015 34 1 8.0671 1.2509 -0.5113 35 1 7.8338 3.0155 -0.5117 36 1 7.6180 2.9875 1.9584 37 1 7.8513 1.2229 1.9588 38 1 10.0572 2.1917 0.6343 39 1 9.0147 1.2798 4.1425 40 1 10.5223 0.5348 3.5589 41 1 11.8227 1.9199 5.1528 42 1 10.3148 2.6646 5.7359 43 1 9.4898 0.4361 6.4456 44 1 10.9979 -0.3079 5.8624 45 1 10.5139 -1.7809 9.2024 46 1 5.6690 3.9828 0.0010 47 1 3.2282 3.6644 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309925218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:31 Heat of formation + Delta-G solvation = -138.503395 kcal Electronic energy + Delta-G solvation = -26233.722944 eV Core-core repulsion = 22313.955842 eV Total energy + Delta-G solvation = -3919.767102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.11187 -38.97074 -38.15483 -37.04476 -36.64011 -36.45325 -34.15481 -33.29491 -32.10318 -31.72457 -29.64208 -28.31445 -25.61280 -25.01668 -24.22407 -22.90350 -22.43034 -21.75417 -20.31331 -19.22102 -18.69446 -18.45800 -17.47978 -17.18135 -17.02831 -16.96726 -16.50624 -16.36495 -16.06050 -15.60058 -15.46066 -15.17416 -14.48870 -14.41674 -14.31201 -14.26030 -14.04570 -13.64926 -13.49797 -13.34816 -13.20408 -13.17357 -13.09555 -12.96139 -12.73053 -12.68417 -12.63768 -12.46375 -12.33368 -12.18603 -12.09390 -11.73359 -11.62235 -11.54265 -11.38137 -11.09561 -10.57070 -10.33361 -9.92178 -9.02714 -8.22694 -6.33645 -0.69840 0.41769 0.45333 1.40002 1.42627 1.50528 1.83532 2.28772 2.39776 2.77316 2.81998 3.10677 3.28064 3.74325 3.84850 3.91847 3.96273 4.00418 4.04864 4.10396 4.11358 4.26543 4.36082 4.41240 4.46068 4.51017 4.62066 4.65375 4.68935 4.73946 4.92364 4.93212 4.97490 4.99362 5.07845 5.16323 5.20184 5.25669 5.36400 5.43856 5.45527 5.63505 5.72225 5.79606 5.87742 6.18276 6.19981 6.48373 6.81892 7.35518 8.88545 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.002101 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.396795 B =13321.814121 C =15433.174910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.337 6.337 4 C 0.110 3.890 5 C -0.214 4.214 6 C -0.077 4.077 7 C -0.127 4.127 8 C -0.073 4.073 9 C 0.108 3.892 10 N -1.107 6.107 11 S 2.635 3.365 12 O -0.992 6.992 13 O -0.992 6.992 14 C -0.611 4.611 15 C -0.107 4.107 16 C 0.031 3.969 17 C -0.553 4.553 18 H 0.060 0.940 19 C 0.002 3.998 20 N -0.930 5.930 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.267 1.267 25 C -0.080 4.080 26 C -0.167 4.167 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.428 0.572 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.002 0.998 44 H 0.003 0.997 45 H 0.265 0.735 46 H 0.143 0.857 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.370 1.732 -23.795 28.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.251 6.251 4 C 0.064 3.936 5 C -0.233 4.233 6 C -0.095 4.095 7 C -0.128 4.128 8 C -0.112 4.112 9 C -0.018 4.018 10 N -0.870 5.870 11 S 2.730 3.270 12 O -0.983 6.983 13 O -0.982 6.982 14 C -0.741 4.741 15 C -0.146 4.146 16 C -0.007 4.007 17 C -0.591 4.591 18 H 0.078 0.922 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.787 3.213 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.192 1.192 25 C -0.098 4.098 26 C -0.186 4.186 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.265 0.735 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.020 0.980 44 H 0.021 0.979 45 H 0.074 0.926 46 H 0.161 0.839 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.238 2.581 -23.443 28.634 hybrid contribution 0.198 -0.961 0.883 1.320 sum -16.040 1.620 -22.559 27.728 Atomic orbital electron populations 1.21808 0.91679 1.04116 1.03126 1.23028 0.96796 0.80882 1.02154 1.86047 1.19197 1.31166 1.88715 1.19268 0.82607 0.94786 0.96897 1.21472 0.94612 0.98525 1.08685 1.21166 0.94448 0.97469 0.96460 1.19801 0.95688 0.93205 1.04138 1.20652 0.90511 1.04934 0.95114 1.21539 0.78250 1.02494 0.99478 1.55256 1.16265 1.87956 1.27484 1.04036 0.72553 0.75853 0.74557 1.93535 1.35748 1.87107 1.81865 1.93530 1.73772 1.48003 1.82860 1.30510 1.11611 1.20461 1.11545 1.21309 0.99867 1.00690 0.92764 1.18960 0.95816 0.93027 0.92943 1.21727 1.35039 1.03357 0.99012 0.92164 1.25946 0.96002 0.94834 1.02861 1.70064 1.43934 1.08905 1.34047 0.85531 0.79225 0.77950 0.78561 1.19271 1.20617 1.19213 1.21148 0.91928 0.99799 0.96925 1.20636 0.95841 0.95123 1.06989 0.91725 0.88308 0.92094 0.91000 0.91502 0.84060 0.83650 0.88310 0.89341 0.90952 0.90244 0.73545 0.83914 0.83498 0.91530 0.91612 0.97953 0.97857 0.92636 0.83905 0.84921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 71.98 0.74 -0.59 16 2 C 0.05 0.55 5.46 71.98 0.39 0.95 16 3 O -0.34 -6.32 10.14 -92.39 -0.94 -7.26 16 4 C 0.11 2.07 6.69 22.51 0.15 2.22 16 5 C -0.21 -3.42 9.04 22.37 0.20 -3.22 16 6 C -0.08 -1.12 9.69 22.25 0.22 -0.91 16 7 C -0.13 -1.89 5.13 -19.85 -0.10 -1.99 16 8 C -0.07 -0.87 5.48 29.85 0.16 -0.70 16 9 C 0.11 1.71 6.11 86.38 0.53 2.24 16 10 N -1.11 -19.51 5.88 -187.49 -1.10 -20.61 16 11 S 2.64 71.31 5.46 -56.49 -0.31 71.00 16 12 O -0.99 -32.85 18.08 -127.65 -2.31 -35.16 16 13 O -0.99 -33.38 17.50 -127.65 -2.23 -35.61 16 14 C -0.61 -17.72 6.07 71.98 0.44 -17.28 16 15 C -0.11 -4.32 5.16 30.59 0.16 -4.16 16 16 C 0.03 1.59 4.97 29.85 0.15 1.73 16 17 C -0.55 -31.55 9.11 25.60 0.23 -31.32 16 18 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 19 C 0.00 0.10 5.46 84.65 0.46 0.57 16 20 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 21 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C -0.08 -1.29 9.69 22.25 0.22 -1.07 16 26 C -0.17 -3.05 9.99 22.37 0.22 -2.83 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.69 7.68 -2.39 -0.02 0.67 16 31 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 32 H 0.14 1.71 6.30 -2.91 -0.02 1.69 16 33 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.10 0.81 8.08 -2.39 -0.02 0.79 16 35 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 36 H 0.07 1.33 7.70 -2.39 -0.02 1.31 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.43 5.54 8.62 -96.74 -0.83 4.71 16 39 H 0.14 3.65 8.14 -2.39 -0.02 3.63 16 40 H 0.15 3.71 8.14 -2.39 -0.02 3.69 16 41 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 44 H 0.00 0.16 8.14 -2.39 -0.02 0.15 16 45 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 46 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 47 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -77.96 405.30 -0.29 -78.26 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.12 Total: 14.98 kcal Atomic # 6 Polarization: -60.55 SS G_CDS: 4.17 Total: -56.38 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -0.82 Total: -76.11 kcal Atomic # 8 Polarization: -72.56 SS G_CDS: -5.48 Total: -78.03 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 71.31 SS G_CDS: -0.31 Total: 71.00 kcal Total: -77.96 -0.29 -78.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309925218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.248 kcal (2) G-P(sol) polarization free energy of solvation -77.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds