Wall clock time and date at job start Sat Apr 11 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46905 * 110.99973 * 2 1 4 4 C 1.38854 * 111.00297 * 236.04710 * 2 1 3 5 5 C 1.39595 * 120.55606 * 59.71908 * 4 2 1 6 6 C 1.38207 * 118.41638 * 179.78354 * 5 4 2 7 7 C 1.38834 * 119.47430 * 0.47347 * 6 5 4 8 8 N 1.31334 * 121.12414 * 359.76763 * 7 6 5 9 9 C 1.32890 * 121.71768 * 359.97438 * 8 7 6 10 10 C 1.47712 * 119.80509 * 180.02562 * 9 8 7 11 11 O 1.21572 * 120.00264 * 179.97438 * 10 9 8 12 12 N 1.34775 * 120.00070 * 359.97438 * 10 9 8 13 13 C 1.46504 * 120.00127 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47492 * 180.02562 * 13 12 10 15 15 C 1.38315 * 119.96427 * 269.72619 * 14 13 12 16 16 C 1.38286 * 120.13607 * 179.76256 * 15 14 13 17 17 C 1.38119 * 120.06721 * 0.50935 * 16 15 14 18 18 C 1.38850 * 119.93199 * 359.74738 * 17 16 15 19 19 O 1.35760 * 120.07214 * 179.97438 * 18 17 16 20 20 C 1.34827 * 116.99308 * 354.48775 * 19 18 17 21 21 H 1.08000 * 120.00512 * 5.05952 * 20 19 18 22 22 C 1.38654 * 119.99305 * 185.05729 * 20 19 18 23 23 N 1.31557 * 120.00243 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99620 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46717 * 90.00323 * 24 22 20 26 26 H 1.48494 * 109.47106 * 209.99868 * 24 22 20 27 27 H 1.48497 * 109.47381 * 330.00320 * 24 22 20 28 28 C 1.38076 * 119.96136 * 89.99670 * 14 13 12 29 29 H 1.09003 * 109.47059 * 183.95392 * 1 2 3 30 30 H 1.08992 * 109.47581 * 63.95092 * 1 2 3 31 31 H 1.09004 * 109.47417 * 303.94983 * 1 2 3 32 32 H 1.09008 * 109.46941 * 56.04673 * 3 2 1 33 33 H 1.08995 * 109.47148 * 176.04443 * 3 2 1 34 34 H 1.08994 * 109.47500 * 296.04792 * 3 2 1 35 35 H 1.07996 * 120.79460 * 359.97438 * 5 4 2 36 36 H 1.07995 * 120.26029 * 180.24559 * 6 5 4 37 37 H 1.08003 * 119.43661 * 179.78864 * 7 6 5 38 38 H 0.97000 * 120.00504 * 0.02562 * 12 10 9 39 39 H 1.08997 * 109.47139 * 300.00097 * 13 12 10 40 40 H 1.09008 * 109.46947 * 60.00227 * 13 12 10 41 41 H 1.08005 * 119.93522 * 359.97438 * 15 14 13 42 42 H 1.08004 * 119.96607 * 180.25616 * 16 15 14 43 43 H 1.08004 * 120.03373 * 179.72068 * 17 16 15 44 44 H 0.97003 * 119.99584 * 179.97438 * 23 22 20 45 45 H 1.07997 * 120.04100 * 359.96071 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9666 -0.7240 -1.0753 5 6 1.6551 -0.3543 -2.3848 6 6 2.1781 -1.1034 -3.4218 7 6 2.9827 -2.1980 -3.1357 8 7 3.2594 -2.5316 -1.8959 9 6 2.7854 -1.8409 -0.8642 10 6 3.1240 -2.2534 0.5132 11 8 2.6928 -1.6239 1.4596 12 7 3.9109 -3.3276 0.7207 13 6 4.2462 -3.7371 2.0869 14 6 5.1320 -4.9556 2.0431 15 6 4.5696 -6.2192 2.0552 16 6 5.3788 -7.3397 2.0102 17 6 6.7521 -7.2001 1.9636 18 6 7.3199 -5.9330 1.9567 19 8 8.6694 -5.7924 1.9115 20 6 9.4050 -6.9196 1.9902 21 1 8.9173 -7.8831 2.0022 22 6 10.7878 -6.8417 2.0559 23 7 11.3820 -5.6680 2.0418 24 14 11.8071 -8.4033 2.1657 25 1 12.1465 -8.8700 0.7974 26 1 13.0568 -8.1268 2.9186 27 1 11.0282 -9.4544 2.8683 28 6 6.5042 -4.8093 1.9966 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3634 0.4512 -0.9232 31 1 -0.3634 0.5739 0.8525 32 1 1.5897 1.9164 0.8525 33 1 3.0827 1.3433 0.0709 34 1 1.7044 1.8724 -0.9232 35 1 1.0231 0.4987 -2.5830 36 1 1.9596 -0.8416 -4.4465 37 1 3.3883 -2.7851 -3.9464 38 1 4.2554 -3.8298 -0.0343 39 1 4.7704 -2.9253 2.5911 40 1 3.3312 -3.9720 2.6307 41 1 3.4962 -6.3310 2.0964 42 1 4.9366 -8.3250 2.0156 43 1 7.3838 -8.0756 1.9330 44 1 12.3494 -5.6135 2.0881 45 1 6.9428 -3.8224 1.9909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361964634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:23 Heat of formation + Delta-G solvation = 25.506472 kcal Electronic energy + Delta-G solvation = -28212.394166 eV Core-core repulsion = 24196.587865 eV Total energy + Delta-G solvation = -4015.806301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.06793 -39.28376 -38.62744 -37.56320 -36.69295 -34.30061 -32.64333 -32.27915 -30.97394 -30.42671 -29.06129 -27.89123 -26.32366 -25.33552 -25.15239 -24.16789 -21.80764 -21.64231 -20.86625 -20.56545 -18.42720 -17.53608 -17.23408 -17.00735 -16.65056 -15.68381 -15.42059 -15.33853 -15.17824 -14.88468 -14.42540 -14.38124 -14.28918 -14.10347 -13.69476 -13.60616 -13.41739 -13.25598 -12.89291 -12.67978 -12.59163 -12.33134 -12.26751 -12.04278 -11.98555 -11.62516 -11.33248 -10.89273 -10.76782 -10.64537 -10.44653 -10.20531 -10.18307 -9.84961 -9.35792 -9.26901 -8.85287 -8.76035 -8.56831 -8.16507 -7.26835 -6.44997 -4.04313 0.40796 0.79664 1.97488 2.33539 2.78831 3.12227 3.13768 3.18595 3.34676 3.49560 3.71003 3.96147 4.07880 4.40284 4.47269 4.58054 4.71282 4.79850 4.94007 5.00504 5.04659 5.11839 5.12575 5.22330 5.26053 5.35981 5.56725 5.59860 5.62061 5.62828 5.74088 5.82108 5.91284 5.99706 6.07652 6.14110 6.31823 6.58588 6.61635 6.65460 6.88225 6.93693 7.04793 7.25752 7.33057 7.40913 7.45622 7.76468 7.84304 7.99405 8.43567 9.00473 9.70102 10.72935 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017616 B = 0.002151 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.092871 B =13014.237898 C =13358.234667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.486 5.486 3 C 0.034 3.966 4 C 0.097 3.903 5 C -0.118 4.118 6 C -0.143 4.143 7 C 0.097 3.903 8 N -0.449 5.449 9 C 0.101 3.899 10 C 0.563 3.437 11 O -0.500 6.500 12 N -0.707 5.707 13 C 0.169 3.831 14 C -0.071 4.071 15 C -0.193 4.193 16 C -0.077 4.077 17 C -0.226 4.226 18 C 0.150 3.850 19 O -0.177 6.177 20 C -0.392 4.392 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.862 5.862 24 Si 0.941 3.059 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.169 4.169 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.026 0.974 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.165 0.835 38 H 0.411 0.589 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.270 0.730 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.575 9.662 -9.678 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.206 5.206 3 C -0.113 4.113 4 C -0.001 4.001 5 C -0.146 4.146 6 C -0.164 4.164 7 C -0.063 4.063 8 N -0.160 5.160 9 C -0.038 4.038 10 C 0.346 3.654 11 O -0.373 6.373 12 N -0.359 5.359 13 C 0.046 3.954 14 C -0.072 4.072 15 C -0.213 4.213 16 C -0.095 4.095 17 C -0.245 4.245 18 C 0.097 3.903 19 O -0.081 6.081 20 C -0.468 4.468 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.497 5.497 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.189 4.189 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.182 0.818 38 H 0.247 0.753 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.080 0.920 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.806 9.483 -8.283 23.470 hybrid contribution -0.080 -0.011 -1.409 1.411 sum -19.886 9.472 -9.693 24.065 Atomic orbital electron populations 1.22436 0.85522 1.02811 1.00635 1.59221 1.08155 1.13904 1.39364 1.22425 1.01396 0.86843 1.00587 1.19646 0.96181 0.94703 0.89570 1.22202 0.99443 1.00033 0.92954 1.22268 0.97750 0.96057 1.00344 1.22882 0.94872 0.94861 0.93687 1.67707 1.19869 1.28777 0.99681 1.21420 0.96064 0.92662 0.93665 1.17617 0.79720 0.81088 0.86977 1.90844 1.51981 1.53126 1.41398 1.46021 1.50395 1.29870 1.09662 1.20160 0.97781 0.94502 0.82908 1.19265 0.92680 0.93626 1.01641 1.20479 0.98463 0.91890 1.10425 1.20737 0.93183 0.97567 0.98006 1.21229 0.95142 0.97666 1.10503 1.19321 0.85314 0.92893 0.92785 1.83987 1.11259 1.34282 1.78532 1.21318 0.88264 0.84590 1.52666 0.89064 1.25289 0.95977 0.98702 0.96537 1.70042 1.10323 1.23357 1.45969 0.85716 0.79116 0.79943 0.78678 1.19885 1.20257 1.19192 1.20089 0.91732 0.97325 1.09757 0.91222 0.95560 0.90402 0.90383 0.91085 0.95569 0.84583 0.84300 0.81788 0.75340 0.90804 0.90899 0.87512 0.87326 0.85504 0.92009 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.34 60.06 0.56 0.84 16 2 N -0.49 -5.44 2.91 -186.52 -0.54 -5.99 16 3 C 0.03 0.31 9.38 60.07 0.56 0.87 16 4 C 0.10 1.10 4.72 -83.48 -0.39 0.71 16 5 C -0.12 -0.98 8.68 -39.09 -0.34 -1.32 16 6 C -0.14 -1.03 10.10 -39.37 -0.40 -1.43 16 7 C 0.10 0.87 11.17 -17.54 -0.20 0.68 16 8 N -0.45 -5.54 9.53 -9.68 -0.09 -5.64 16 9 C 0.10 1.35 6.76 -82.84 -0.56 0.79 16 10 C 0.56 8.75 7.80 -12.39 -0.10 8.65 16 11 O -0.50 -8.77 15.01 5.30 0.08 -8.69 16 12 N -0.71 -10.74 5.54 -62.47 -0.35 -11.08 16 13 C 0.17 2.65 5.80 -5.19 -0.03 2.62 16 14 C -0.07 -1.27 5.25 -104.65 -0.55 -1.82 16 15 C -0.19 -3.30 9.70 -39.54 -0.38 -3.68 16 16 C -0.08 -1.38 10.04 -39.61 -0.40 -1.78 16 17 C -0.23 -4.84 9.17 -39.40 -0.36 -5.20 16 18 C 0.15 3.60 6.65 -39.11 -0.26 3.34 16 19 O -0.18 -5.03 9.76 0.03 0.00 -5.03 16 20 C -0.39 -10.90 9.49 30.89 0.29 -10.61 16 21 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.29 13.67 55.48 0.76 -24.53 16 24 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 28 C -0.17 -3.55 9.65 -39.39 -0.38 -3.93 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.17 7.16 -51.93 -0.37 -0.20 16 31 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 32 H 0.08 0.62 8.12 -51.92 -0.42 0.20 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.03 0.19 7.41 -51.93 -0.38 -0.20 16 35 H 0.14 0.82 7.16 -52.49 -0.38 0.44 16 36 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 37 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.41 6.15 7.79 -40.82 -0.32 5.83 16 39 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 40 H 0.07 1.09 8.08 -51.92 -0.42 0.67 16 41 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 42 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 43 H 0.13 2.72 5.64 -52.48 -0.30 2.42 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -33.16 384.13 -8.20 -41.36 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.80 Total: 8.67 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -3.02 Total: -10.28 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.22 Total: -47.24 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.08 Total: -13.72 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.16 -8.20 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361964634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.867 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds