Wall clock time and date at job start Sat Apr 11 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40092 * 126.03284 * 2 1 4 4 C 1.30842 * 108.20177 * 180.23598 * 3 2 1 5 5 C 1.39872 * 108.20244 * 359.77825 * 4 3 2 6 6 C 1.34948 * 126.04040 * 179.85053 * 2 1 3 7 7 C 1.50697 * 126.12340 * 0.03108 * 6 2 1 8 8 O 1.42901 * 113.41602 * 346.51474 * 7 6 2 9 9 C 1.53492 * 114.20499 * 119.71698 * 7 6 2 10 10 N 1.47070 * 87.98751 * 87.51677 * 9 7 6 11 11 C 1.34777 * 136.06219 * 207.08350 * 10 9 7 12 12 O 1.21287 * 119.99500 * 0.02562 * 11 10 9 13 13 C 1.50688 * 120.00393 * 179.97438 * 11 10 9 14 14 H 1.08997 * 109.47366 * 306.38712 * 13 11 10 15 15 C 1.50702 * 109.47068 * 66.38330 * 13 11 10 16 16 H 1.07997 * 119.99874 * 35.51013 * 15 13 11 17 17 C 1.37879 * 120.00357 * 215.50220 * 15 13 11 18 18 N 1.31508 * 120.00014 * 185.19480 * 17 15 13 19 19 Si 1.86801 * 119.99708 * 5.20051 * 17 15 13 20 20 H 1.48496 * 109.47198 * 84.60820 * 19 17 15 21 21 H 1.48504 * 109.46993 * 204.60801 * 19 17 15 22 22 H 1.48503 * 109.47196 * 324.60698 * 19 17 15 23 23 C 1.50695 * 109.47477 * 186.38337 * 13 11 10 24 24 C 1.38237 * 120.00038 * 293.43706 * 23 13 11 25 25 C 1.38234 * 119.99685 * 179.78461 * 24 23 13 26 26 C 1.38234 * 120.00351 * 0.44368 * 25 24 23 27 27 C 1.38231 * 119.99970 * 359.81013 * 26 25 24 28 28 C 1.38232 * 120.00132 * 359.97438 * 27 26 25 29 29 C 1.47067 * 87.88375 * 27.34147 * 10 9 7 30 30 H 1.09007 * 109.46715 * 270.15131 * 1 2 3 31 31 H 1.09004 * 109.47575 * 30.15057 * 1 2 3 32 32 H 1.09004 * 109.47204 * 150.15482 * 1 2 3 33 33 H 1.07999 * 125.89800 * 179.82076 * 4 3 2 34 34 H 1.07999 * 126.04070 * 180.02562 * 5 4 3 35 35 H 0.96697 * 113.99924 * 313.20214 * 8 7 6 36 36 H 1.08996 * 113.47087 * 332.74151 * 9 7 6 37 37 H 1.08997 * 113.47172 * 202.29519 * 9 7 6 38 38 H 0.97002 * 119.99796 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.00224 * 359.97438 * 24 23 13 40 40 H 1.08010 * 120.00164 * 180.27308 * 25 24 23 41 41 H 1.08005 * 120.00110 * 179.83101 * 26 25 24 42 42 H 1.08000 * 120.00529 * 180.02562 * 27 26 25 43 43 H 1.07998 * 120.00431 * 179.97438 * 28 27 26 44 44 H 1.09002 * 113.46446 * 87.43549 * 29 10 9 45 45 H 1.08998 * 113.47057 * 217.87489 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5346 0.7322 -0.0051 5 6 3.5437 -0.6664 -0.0034 6 6 2.2590 -1.0912 0.0028 7 6 1.7974 -2.5257 0.0059 8 8 0.4094 -2.6750 0.3115 9 6 2.2658 -3.3402 -1.2079 10 7 3.4938 -3.6504 -0.4605 11 6 4.7689 -3.9560 -0.7726 12 8 5.1098 -4.0208 -1.9347 13 6 5.7711 -4.2160 0.3223 14 1 5.7764 -3.3761 1.0169 15 6 5.3942 -5.4751 1.0596 16 1 4.9560 -6.3041 0.5237 17 6 5.6090 -5.5690 2.4183 18 7 5.3760 -6.7019 3.0442 19 14 6.2310 -4.0869 3.3701 20 1 5.0832 -3.2233 3.7468 21 1 6.9298 -4.5447 4.5979 22 1 7.1744 -3.3144 2.5224 23 6 7.1427 -4.3782 -0.2803 24 6 7.4177 -5.4640 -1.0906 25 6 8.6746 -5.6104 -1.6469 26 6 9.6593 -4.6760 -1.3857 27 6 9.3859 -3.5931 -0.5712 28 6 8.1277 -3.4442 -0.0184 29 6 2.7167 -3.4869 0.7774 30 1 -0.3633 0.0027 1.0277 31 1 -0.3634 0.8886 -0.5162 32 1 -0.3634 -0.8914 -0.5114 33 1 4.4053 1.3712 -0.0092 34 1 4.4211 -1.2962 -0.0062 35 1 0.1176 -2.1607 1.0765 36 1 2.4402 -2.7336 -2.0965 37 1 1.6472 -4.2149 -1.4087 38 1 5.5268 -6.7678 4.0001 39 1 6.6497 -6.1962 -1.2914 40 1 8.8883 -6.4563 -2.2836 41 1 10.6422 -4.7919 -1.8182 42 1 10.1550 -2.8628 -0.3674 43 1 7.9141 -2.5984 0.6182 44 1 2.2169 -4.4003 1.0999 45 1 3.2751 -3.0054 1.5801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363309562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:30 Heat of formation + Delta-G solvation = 76.889923 kcal Electronic energy + Delta-G solvation = -30479.181599 eV Core-core repulsion = 26465.603452 eV Total energy + Delta-G solvation = -4013.578147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.71536 -39.91430 -38.72187 -37.37610 -35.68851 -33.66493 -33.11050 -31.54150 -30.63965 -30.11993 -28.76304 -27.21409 -26.79443 -25.89050 -23.70850 -22.63400 -21.84497 -21.13758 -20.87621 -19.84011 -18.39388 -17.91947 -17.15052 -16.55288 -16.23760 -15.91283 -15.45888 -15.15718 -14.83149 -14.67009 -14.38752 -14.20437 -14.03714 -13.78002 -13.48575 -13.29910 -12.96843 -12.91027 -12.74558 -12.55857 -12.49494 -12.37582 -12.12345 -11.96934 -11.71075 -11.34939 -11.12783 -11.02468 -10.70316 -10.50311 -10.31582 -10.25690 -9.96871 -9.60594 -9.29004 -8.99097 -8.78571 -8.57084 -8.28725 -8.11259 -7.82476 -6.33751 -4.37546 1.67852 2.15736 2.22450 2.36140 2.77850 3.09102 3.16917 3.21166 3.23414 3.41123 3.93601 4.09108 4.18558 4.44722 4.46870 4.60301 4.91634 4.94782 4.99346 5.10905 5.27342 5.40006 5.57021 5.60785 5.61851 5.63665 5.66180 5.73337 5.74909 5.83315 5.96589 6.02564 6.09425 6.24283 6.30803 6.36915 6.43796 6.61323 6.75766 6.83397 6.86085 7.18373 7.19127 7.24391 7.26922 7.59725 7.61764 7.81000 8.13360 8.26269 8.65930 8.92897 9.23913 10.77242 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011706 B = 0.004354 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.416127 B = 6429.912826 C = 7046.797811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.369 5.369 3 N -0.296 5.296 4 C 0.047 3.953 5 C -0.240 4.240 6 C 0.075 3.925 7 C 0.142 3.858 8 O -0.536 6.536 9 C 0.129 3.871 10 N -0.631 5.631 11 C 0.570 3.430 12 O -0.550 6.550 13 C 0.039 3.961 14 H 0.063 0.937 15 C -0.509 4.509 16 H 0.081 0.919 17 C 0.088 3.912 18 N -0.880 5.880 19 Si 0.858 3.142 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.253 1.253 23 C -0.031 4.031 24 C -0.069 4.069 25 C -0.131 4.131 26 C -0.141 4.141 27 C -0.131 4.131 28 C -0.131 4.131 29 C 0.108 3.892 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.185 0.815 34 H 0.149 0.851 35 H 0.380 0.620 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.269 0.731 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 10.718 -3.004 13.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.152 5.152 3 N -0.117 5.117 4 C -0.138 4.138 5 C -0.269 4.269 6 C -0.052 4.052 7 C 0.098 3.902 8 O -0.341 6.341 9 C 0.005 3.995 10 N -0.369 5.369 11 C 0.363 3.637 12 O -0.427 6.427 13 C 0.018 3.982 14 H 0.080 0.920 15 C -0.546 4.546 16 H 0.099 0.901 17 C -0.117 4.117 18 N -0.515 5.515 19 Si 0.684 3.316 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.178 1.178 23 C -0.032 4.032 24 C -0.088 4.088 25 C -0.149 4.149 26 C -0.160 4.160 27 C -0.149 4.149 28 C -0.150 4.150 29 C -0.017 4.017 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.202 0.798 34 H 0.167 0.833 35 H 0.228 0.772 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.306 11.140 -4.005 13.911 hybrid contribution 0.852 0.272 1.320 1.594 sum -6.454 11.412 -2.685 13.383 Atomic orbital electron populations 1.22152 0.74344 1.05551 1.03406 1.48436 1.06468 1.02959 1.57344 1.77346 1.01931 1.07653 1.24776 1.23864 0.95205 0.94986 0.99790 1.21329 0.96439 0.94933 1.14203 1.20762 0.91739 0.88882 1.03833 1.21266 0.81437 0.87501 1.00022 1.86572 1.22788 1.72259 1.52494 1.22804 0.85036 0.97514 0.94167 1.49066 1.06940 1.71650 1.09229 1.20928 0.79810 0.72497 0.90485 1.90632 1.78242 1.52165 1.21617 1.18311 0.87515 0.99960 0.92449 0.91958 1.20449 1.43052 0.98459 0.92675 0.90075 1.24945 0.93849 0.95675 0.97271 1.69856 1.46963 1.24620 1.10109 0.87127 0.80290 0.83812 0.80348 1.19653 1.20978 1.17773 1.20019 0.95890 0.93249 0.94057 1.20853 0.95797 0.96966 0.95145 1.21031 0.93922 0.99086 1.00858 1.20870 0.98644 0.95905 1.00541 1.20879 0.96565 0.98325 0.99136 1.21019 0.93794 0.99167 1.00975 1.23541 0.90263 0.97889 0.89966 0.90869 0.89466 0.87679 0.79802 0.83309 0.77157 0.90063 0.88560 0.92091 0.86472 0.87130 0.87350 0.87283 0.87187 0.87700 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 9.86 59.85 0.59 1.27 16 2 N -0.37 -4.58 4.01 -63.88 -0.26 -4.83 16 3 N -0.30 -4.17 12.58 30.63 0.39 -3.78 16 4 C 0.05 0.63 12.03 -17.36 -0.21 0.42 16 5 C -0.24 -3.56 9.79 -40.01 -0.39 -3.95 16 6 C 0.08 1.02 6.16 -82.26 -0.51 0.51 16 7 C 0.14 1.82 2.04 -91.12 -0.19 1.63 16 8 O -0.54 -5.41 11.34 -35.23 -0.40 -5.81 16 9 C 0.13 1.89 8.01 -8.51 -0.07 1.82 16 10 N -0.63 -11.29 2.72 -185.04 -0.50 -11.79 16 11 C 0.57 12.19 6.85 -10.99 -0.08 12.11 16 12 O -0.55 -13.03 16.10 5.55 0.09 -12.94 16 13 C 0.04 0.87 1.80 -94.08 -0.17 0.70 16 14 H 0.06 1.34 5.01 -51.93 -0.26 1.08 16 15 C -0.51 -12.76 7.94 -34.44 -0.27 -13.04 16 16 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 17 C 0.09 2.25 5.47 -17.82 -0.10 2.16 16 18 N -0.88 -24.35 13.96 55.43 0.77 -23.58 16 19 Si 0.86 19.11 26.99 -169.99 -4.59 14.52 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.25 -5.40 5.50 56.52 0.31 -5.09 16 23 C -0.03 -0.69 4.36 -104.62 -0.46 -1.14 16 24 C -0.07 -1.51 8.19 -39.58 -0.32 -1.84 16 25 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 26 C -0.14 -2.46 10.05 -39.59 -0.40 -2.86 16 27 C -0.13 -2.34 10.05 -39.59 -0.40 -2.73 16 28 C -0.13 -2.64 9.12 -39.58 -0.36 -3.00 16 29 C 0.11 1.68 7.34 -8.37 -0.06 1.61 16 30 H 0.07 0.42 7.97 -51.93 -0.41 0.01 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.74 6.22 -51.93 -0.32 0.41 16 33 H 0.19 1.92 8.06 -52.49 -0.42 1.49 16 34 H 0.15 2.40 7.17 -52.49 -0.38 2.03 16 35 H 0.38 2.60 7.51 45.56 0.34 2.95 16 36 H 0.08 1.21 8.11 -51.93 -0.42 0.79 16 37 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.12 2.66 7.88 -52.49 -0.41 2.25 16 40 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.11 2.05 7.25 -52.49 -0.38 1.67 16 44 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 45 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -32.26 374.69 -7.91 -40.17 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.27 Total: 11.58 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -3.78 Total: -9.19 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.40 Total: -43.99 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.31 Total: -18.75 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.59 Total: 14.52 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.26 -7.91 -40.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363309562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.061 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds