Wall clock time and date at job start Sat Apr 11 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40092 * 126.03284 * 2 1 4 4 C 1.30842 * 108.20177 * 180.23598 * 3 2 1 5 5 C 1.39872 * 108.20244 * 359.77825 * 4 3 2 6 6 C 1.34948 * 126.04040 * 179.85053 * 2 1 3 7 7 C 1.50697 * 126.12340 * 0.03108 * 6 2 1 8 8 O 1.42901 * 113.41602 * 346.51474 * 7 6 2 9 9 C 1.53492 * 114.20499 * 119.71698 * 7 6 2 10 10 N 1.47070 * 87.98751 * 87.51677 * 9 7 6 11 11 C 1.34777 * 136.06219 * 207.08350 * 10 9 7 12 12 O 1.21287 * 119.99500 * 0.02562 * 11 10 9 13 13 C 1.50688 * 120.00393 * 179.97438 * 11 10 9 14 14 H 1.08997 * 109.47366 * 306.38712 * 13 11 10 15 15 C 1.50702 * 109.47068 * 66.38330 * 13 11 10 16 16 H 1.07997 * 119.99874 * 35.51013 * 15 13 11 17 17 C 1.37879 * 120.00357 * 215.50220 * 15 13 11 18 18 N 1.31508 * 120.00014 * 185.19480 * 17 15 13 19 19 Si 1.86801 * 119.99708 * 5.20051 * 17 15 13 20 20 H 1.48496 * 109.47198 * 84.60820 * 19 17 15 21 21 H 1.48504 * 109.46993 * 204.60801 * 19 17 15 22 22 H 1.48503 * 109.47196 * 324.60698 * 19 17 15 23 23 C 1.50695 * 109.47477 * 186.38337 * 13 11 10 24 24 C 1.38237 * 120.00038 * 293.43706 * 23 13 11 25 25 C 1.38234 * 119.99685 * 179.78461 * 24 23 13 26 26 C 1.38234 * 120.00351 * 0.44368 * 25 24 23 27 27 C 1.38231 * 119.99970 * 359.81013 * 26 25 24 28 28 C 1.38232 * 120.00132 * 359.97438 * 27 26 25 29 29 C 1.47067 * 87.88375 * 27.34147 * 10 9 7 30 30 H 1.09007 * 109.46715 * 270.15131 * 1 2 3 31 31 H 1.09004 * 109.47575 * 30.15057 * 1 2 3 32 32 H 1.09004 * 109.47204 * 150.15482 * 1 2 3 33 33 H 1.07999 * 125.89800 * 179.82076 * 4 3 2 34 34 H 1.07999 * 126.04070 * 180.02562 * 5 4 3 35 35 H 0.96697 * 113.99924 * 313.20214 * 8 7 6 36 36 H 1.08996 * 113.47087 * 332.74151 * 9 7 6 37 37 H 1.08997 * 113.47172 * 202.29519 * 9 7 6 38 38 H 0.97002 * 119.99796 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.00224 * 359.97438 * 24 23 13 40 40 H 1.08010 * 120.00164 * 180.27308 * 25 24 23 41 41 H 1.08005 * 120.00110 * 179.83101 * 26 25 24 42 42 H 1.08000 * 120.00529 * 180.02562 * 27 26 25 43 43 H 1.07998 * 120.00431 * 179.97438 * 28 27 26 44 44 H 1.09002 * 113.46446 * 87.43549 * 29 10 9 45 45 H 1.08998 * 113.47057 * 217.87489 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5346 0.7322 -0.0051 5 6 3.5437 -0.6664 -0.0034 6 6 2.2590 -1.0912 0.0028 7 6 1.7974 -2.5257 0.0059 8 8 0.4094 -2.6750 0.3115 9 6 2.2658 -3.3402 -1.2079 10 7 3.4938 -3.6504 -0.4605 11 6 4.7689 -3.9560 -0.7726 12 8 5.1098 -4.0208 -1.9347 13 6 5.7711 -4.2160 0.3223 14 1 5.7764 -3.3761 1.0169 15 6 5.3942 -5.4751 1.0596 16 1 4.9560 -6.3041 0.5237 17 6 5.6090 -5.5690 2.4183 18 7 5.3760 -6.7019 3.0442 19 14 6.2310 -4.0869 3.3701 20 1 5.0832 -3.2233 3.7468 21 1 6.9298 -4.5447 4.5979 22 1 7.1744 -3.3144 2.5224 23 6 7.1427 -4.3782 -0.2803 24 6 7.4177 -5.4640 -1.0906 25 6 8.6746 -5.6104 -1.6469 26 6 9.6593 -4.6760 -1.3857 27 6 9.3859 -3.5931 -0.5712 28 6 8.1277 -3.4442 -0.0184 29 6 2.7167 -3.4869 0.7774 30 1 -0.3633 0.0027 1.0277 31 1 -0.3634 0.8886 -0.5162 32 1 -0.3634 -0.8914 -0.5114 33 1 4.4053 1.3712 -0.0092 34 1 4.4211 -1.2962 -0.0062 35 1 0.1176 -2.1607 1.0765 36 1 2.4402 -2.7336 -2.0965 37 1 1.6472 -4.2149 -1.4087 38 1 5.5268 -6.7678 4.0001 39 1 6.6497 -6.1962 -1.2914 40 1 8.8883 -6.4563 -2.2836 41 1 10.6422 -4.7919 -1.8182 42 1 10.1550 -2.8628 -0.3674 43 1 7.9141 -2.5984 0.6182 44 1 2.2169 -4.4003 1.0999 45 1 3.2751 -3.0054 1.5801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363309562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:29 Heat of formation + Delta-G solvation = 55.140992 kcal Electronic energy + Delta-G solvation = -30480.124704 eV Core-core repulsion = 26465.603452 eV Total energy + Delta-G solvation = -4014.521252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.80019 -41.25792 -40.15601 -38.85313 -36.80020 -35.50791 -33.99050 -33.35436 -31.77871 -31.61913 -30.19283 -28.73346 -27.64053 -27.17778 -25.46389 -23.89739 -23.35708 -22.29702 -22.11878 -21.04008 -19.77718 -19.19135 -18.82601 -18.10966 -17.65764 -17.12870 -16.52852 -16.50366 -16.34249 -16.06217 -15.77702 -15.31972 -15.23268 -15.08581 -14.81864 -14.63887 -14.49273 -14.26158 -14.01394 -13.93281 -13.73757 -13.60451 -13.42556 -13.26094 -13.07581 -12.86294 -12.76480 -12.30935 -12.10841 -11.98320 -11.78424 -11.65619 -11.45066 -11.35459 -10.79393 -10.64768 -10.26974 -9.75196 -9.62411 -9.60786 -9.37404 -8.34185 -6.42038 0.63521 0.64897 0.71084 1.32337 1.38825 1.45965 1.47330 1.68732 1.71463 1.90992 2.30760 2.83518 2.96221 3.02786 3.14671 3.35302 3.55266 3.75675 4.01991 4.12977 4.22328 4.32413 4.34201 4.39056 4.40738 4.42653 4.46588 4.49774 4.55380 4.61422 4.64758 4.71912 4.80650 4.83277 4.87976 4.95007 5.05595 5.22221 5.33049 5.40493 5.59134 5.71219 5.75220 5.91618 5.95402 6.20062 6.31629 6.41422 6.57036 6.61168 6.71208 7.22160 7.28366 8.80397 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011706 B = 0.004354 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.416127 B = 6429.912826 C = 7046.797811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.362 5.362 3 N -0.312 5.312 4 C 0.044 3.956 5 C -0.264 4.264 6 C 0.073 3.927 7 C 0.177 3.823 8 O -0.526 6.526 9 C 0.123 3.877 10 N -0.637 5.637 11 C 0.567 3.433 12 O -0.582 6.582 13 C 0.044 3.956 14 H 0.070 0.930 15 C -0.497 4.497 16 H 0.033 0.967 17 C 0.042 3.958 18 N -0.929 5.929 19 Si 0.912 3.088 20 H -0.250 1.250 21 H -0.290 1.290 22 H -0.237 1.237 23 C -0.060 4.060 24 C -0.101 4.101 25 C -0.135 4.135 26 C -0.135 4.135 27 C -0.125 4.125 28 C -0.146 4.146 29 C 0.101 3.899 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.208 0.792 34 H 0.130 0.870 35 H 0.399 0.601 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.270 0.730 39 H 0.086 0.914 40 H 0.133 0.867 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.122 0.878 44 H 0.103 0.897 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.520 13.384 -2.780 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.146 5.146 3 N -0.134 5.134 4 C -0.140 4.140 5 C -0.294 4.294 6 C -0.056 4.056 7 C 0.132 3.868 8 O -0.334 6.334 9 C 0.000 4.000 10 N -0.372 5.372 11 C 0.359 3.641 12 O -0.462 6.462 13 C 0.023 3.977 14 H 0.088 0.912 15 C -0.535 4.535 16 H 0.051 0.949 17 C -0.159 4.159 18 N -0.566 5.566 19 Si 0.734 3.266 20 H -0.174 1.174 21 H -0.216 1.216 22 H -0.160 1.160 23 C -0.061 4.061 24 C -0.120 4.120 25 C -0.153 4.153 26 C -0.152 4.152 27 C -0.143 4.143 28 C -0.164 4.164 29 C -0.023 4.023 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.225 0.775 34 H 0.148 0.852 35 H 0.251 0.749 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.151 0.849 41 H 0.168 0.832 42 H 0.167 0.833 43 H 0.140 0.860 44 H 0.121 0.879 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.089 13.845 -3.770 16.005 hybrid contribution 0.686 -0.603 1.161 1.477 sum -6.404 13.242 -2.610 14.939 Atomic orbital electron populations 1.22546 0.71756 1.06583 1.05521 1.48763 1.07841 1.02025 1.55925 1.77310 1.02292 1.08487 1.25328 1.24225 0.95924 0.94690 0.99203 1.21337 0.96512 0.95639 1.15911 1.20725 0.91775 0.89296 1.03790 1.20589 0.82263 0.86465 0.97469 1.86560 1.20490 1.72722 1.53585 1.22997 0.83715 0.98438 0.94825 1.49021 1.06892 1.70020 1.11315 1.20682 0.81003 0.72643 0.89772 1.90591 1.79229 1.53904 1.22479 1.18195 0.88516 0.98351 0.92652 0.91232 1.20318 1.42222 0.98276 0.92680 0.94862 1.25639 0.93999 0.98223 0.98008 1.69993 1.49195 1.26982 1.10439 0.86262 0.80765 0.80871 0.78665 1.17380 1.21614 1.16029 1.20084 0.96120 0.94471 0.95437 1.20814 0.96798 0.97126 0.97221 1.21344 0.93066 1.00373 1.00556 1.21349 0.99780 0.94671 0.99448 1.21359 0.96362 0.98916 0.97684 1.21268 0.94395 0.99124 1.01641 1.23705 0.90537 0.98745 0.89362 0.88158 0.88555 0.86611 0.77538 0.85166 0.74930 0.90190 0.87341 0.92078 0.89527 0.84912 0.83214 0.83344 0.85964 0.87860 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 9.86 127.77 1.26 2.20 16 2 N -0.36 -8.16 4.01 -356.02 -1.43 -9.58 16 3 N -0.31 -8.20 12.58 -57.02 -0.72 -8.92 16 4 C 0.04 1.13 12.03 85.24 1.03 2.15 16 5 C -0.26 -7.68 9.79 21.99 0.22 -7.46 16 6 C 0.07 1.87 6.16 41.40 0.25 2.13 16 7 C 0.18 4.30 2.04 -11.12 -0.02 4.28 16 8 O -0.53 -9.17 11.34 -148.98 -1.69 -10.86 16 9 C 0.12 3.60 8.01 83.18 0.67 4.27 16 10 N -0.64 -23.44 2.72 -858.21 -2.33 -25.78 16 11 C 0.57 25.36 6.85 87.65 0.60 25.96 16 12 O -0.58 -28.97 16.10 -3.05 -0.05 -29.02 16 13 C 0.04 2.04 1.80 -13.04 -0.02 2.01 16 14 H 0.07 3.02 5.01 -2.39 -0.01 3.01 16 15 C -0.50 -26.33 7.94 25.60 0.20 -26.13 16 16 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16 17 C 0.04 2.22 5.47 84.66 0.46 2.68 16 18 N -0.93 -53.53 13.96 21.45 0.30 -53.23 16 19 Si 0.91 39.38 26.99 68.60 1.85 41.23 16 20 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.24 -9.53 5.50 99.48 0.55 -8.98 16 23 C -0.06 -2.72 4.36 -19.86 -0.09 -2.80 16 24 C -0.10 -4.60 8.19 22.27 0.18 -4.41 16 25 C -0.14 -5.03 10.05 22.27 0.22 -4.80 16 26 C -0.13 -4.28 10.05 22.27 0.22 -4.05 16 27 C -0.13 -4.08 10.05 22.27 0.22 -3.85 16 28 C -0.15 -5.68 9.12 22.27 0.20 -5.48 16 29 C 0.10 3.12 7.34 83.27 0.61 3.74 16 30 H 0.10 0.75 7.97 -2.38 -0.02 0.73 16 31 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.12 1.21 6.22 -2.38 -0.01 1.20 16 33 H 0.21 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.13 4.26 7.17 -2.91 -0.02 4.24 16 35 H 0.40 4.01 7.51 -74.06 -0.56 3.46 16 36 H 0.08 2.37 8.11 -2.39 -0.02 2.35 16 37 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.09 4.32 7.88 -2.91 -0.02 4.29 16 40 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 41 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 42 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.12 4.32 7.25 -2.91 -0.02 4.30 16 44 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 45 H 0.08 2.49 8.05 -2.39 -0.02 2.47 16 Total: -1.00 -74.13 374.69 2.47 -71.66 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.31 Total: 34.09 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 6.22 Total: -9.58 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -4.18 Total: -97.51 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.74 Total: -39.88 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 1.85 Total: 41.23 kcal Total: -74.13 2.47 -71.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363309562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.798 kcal (2) G-P(sol) polarization free energy of solvation -74.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds