Wall clock time and date at job start Sat Apr 11 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00543 * 2 1 4 4 C 1.50703 * 109.46794 * 90.00038 * 3 2 1 5 5 N 1.29945 * 126.28611 * 270.02399 * 4 3 2 6 6 O 1.21305 * 110.24901 * 179.68238 * 5 4 3 7 7 C 1.33643 * 109.80877 * 0.47556 * 6 5 4 8 8 C 1.50709 * 126.54924 * 179.79771 * 7 6 5 9 9 C 1.52992 * 117.49574 * 59.68598 * 8 7 6 10 10 C 1.52996 * 60.03119 * 252.52064 * 9 8 7 11 11 N 1.31126 * 106.89806 * 359.53204 * 7 6 5 12 12 C 1.34775 * 119.99633 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00326 * 179.97438 * 12 2 1 14 14 C 1.50708 * 120.00296 * 359.97438 * 12 2 1 15 15 C 1.50699 * 109.47249 * 179.97438 * 14 12 2 16 16 C 1.37634 * 120.12497 * 264.99667 * 15 14 12 17 17 C 1.38617 * 120.24592 * 179.97438 * 16 15 14 18 18 C 1.38660 * 120.49983 * 0.02732 * 17 16 15 19 19 C 1.37597 * 120.24896 * 0.02562 * 18 17 16 20 20 C 1.40692 * 120.12466 * 84.73174 * 15 14 12 21 21 C 1.41400 * 120.24942 * 359.97438 * 20 15 14 22 22 H 1.07997 * 119.99588 * 333.89426 * 21 20 15 23 23 C 1.39937 * 119.99993 * 153.89246 * 21 20 15 24 24 N 1.30819 * 120.00320 * 343.71124 * 23 21 20 25 25 Si 1.86800 * 119.99930 * 163.71914 * 23 21 20 26 26 H 1.48500 * 109.47381 * 59.99473 * 25 23 21 27 27 H 1.48499 * 109.47553 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47001 * 299.99701 * 25 23 21 29 29 H 1.08998 * 109.47299 * 89.99384 * 1 2 3 30 30 H 1.08996 * 109.47490 * 209.99604 * 1 2 3 31 31 H 1.08999 * 109.46958 * 329.99875 * 1 2 3 32 32 H 1.09004 * 109.46841 * 330.00613 * 3 2 1 33 33 H 1.08998 * 109.47415 * 210.00203 * 3 2 1 34 34 H 1.08995 * 115.56138 * 205.37231 * 8 7 6 35 35 H 1.09005 * 117.49857 * 145.02260 * 9 8 7 36 36 H 1.09003 * 117.50620 * 0.02562 * 9 8 7 37 37 H 1.09002 * 117.49779 * 107.48087 * 10 9 8 38 38 H 1.09000 * 117.50256 * 252.47676 * 10 9 8 39 39 H 1.09002 * 109.46764 * 300.00478 * 14 12 2 40 40 H 1.08998 * 109.46627 * 59.99960 * 14 12 2 41 41 H 1.07996 * 119.88396 * 0.02562 * 16 15 14 42 42 H 1.07994 * 119.75036 * 180.02562 * 17 16 15 43 43 H 1.08005 * 119.87347 * 179.97438 * 18 17 16 44 44 H 1.07998 * 120.12674 * 179.97438 * 19 18 17 45 45 H 0.97006 * 120.00401 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7036 1.4209 5 7 1.6697 2.4490 2.1461 6 8 2.1513 2.6128 3.2473 7 6 3.3237 1.9764 3.3282 8 6 4.2414 1.9340 4.5229 9 6 3.6846 1.3454 5.8207 10 6 3.9107 2.8538 5.7009 11 7 3.5203 1.3912 2.1713 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1674 -0.0010 14 6 1.3853 -2.4724 -0.0005 15 6 2.3645 -3.6179 -0.0018 16 6 2.7335 -4.2098 -1.1882 17 6 3.6345 -5.2633 -1.1924 18 6 4.1734 -5.7331 -0.0043 19 6 3.8180 -5.1570 1.1937 20 6 2.9092 -4.0825 1.2093 21 6 2.5422 -3.4781 2.4338 22 1 2.2100 -2.4506 2.4505 23 6 2.6093 -4.2112 3.6238 24 7 2.6968 -5.5159 3.5843 25 14 2.5736 -3.3270 5.2689 26 1 1.3081 -2.5596 5.3911 27 1 2.6564 -4.3223 6.3679 28 1 3.7273 -2.3961 5.3556 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5139 32 1 1.6085 2.0283 -0.5138 33 1 3.1500 1.1383 -0.5138 34 1 5.2940 1.7581 4.3014 35 1 4.3710 0.7823 6.4531 36 1 2.6547 0.9884 5.8104 37 1 3.0296 3.4893 5.6113 38 1 4.7456 3.2832 6.2547 39 1 0.7589 -2.5302 0.8897 40 1 0.7583 -2.5298 -0.8903 41 1 2.3203 -3.8518 -2.1196 42 1 3.9188 -5.7216 -2.1280 43 1 4.8742 -6.5547 -0.0192 44 1 4.2386 -5.5248 2.1179 45 1 2.7437 -6.0241 4.4093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363441013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:38 Heat of formation + Delta-G solvation = 87.194474 kcal Electronic energy + Delta-G solvation = -29926.766088 eV Core-core repulsion = 25913.634780 eV Total energy + Delta-G solvation = -4013.131308 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.50597 -39.49791 -37.66224 -37.42526 -36.02905 -34.85351 -33.59073 -32.28983 -31.58366 -29.43447 -28.75419 -26.84159 -25.76564 -25.00904 -24.84442 -23.27002 -22.66212 -20.99303 -20.87546 -19.92121 -18.57309 -18.03801 -17.48117 -17.12060 -16.62884 -16.25671 -15.77397 -15.69496 -15.21026 -14.78696 -14.43099 -13.95651 -13.56055 -13.27080 -13.20071 -12.95509 -12.64280 -12.52233 -12.40419 -12.27384 -12.03593 -11.91242 -11.82522 -11.61398 -11.54741 -11.15921 -11.12176 -11.02604 -10.94685 -10.86996 -10.83332 -10.66100 -10.38563 -9.70415 -9.45057 -9.33297 -9.13712 -9.10590 -8.58148 -7.27217 -7.25239 -6.70771 -4.30582 1.12845 2.18926 2.74325 2.81761 3.00145 3.04377 3.07788 3.22311 3.29700 3.39704 3.50438 3.75913 3.94925 4.06591 4.44528 4.58010 4.63897 4.69186 5.07965 5.14508 5.21403 5.32518 5.36752 5.49458 5.54914 5.68087 5.72809 5.75509 5.78298 5.81243 5.84316 6.02516 6.10271 6.13219 6.31752 6.45162 6.54609 6.64079 6.83110 7.11662 7.33351 7.46100 7.62943 7.73195 7.96613 8.10889 8.16849 8.24034 8.35326 8.68143 8.80114 8.95398 9.05452 10.23403 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009386 B = 0.004864 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.461544 B = 5755.109310 C = 7761.212097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.628 5.628 3 C 0.209 3.791 4 C 0.161 3.839 5 N -0.383 5.383 6 O 0.071 5.929 7 C 0.204 3.796 8 C -0.077 4.077 9 C -0.154 4.154 10 C -0.159 4.159 11 N -0.447 5.447 12 C 0.514 3.486 13 O -0.498 6.498 14 C -0.066 4.066 15 C -0.182 4.182 16 C -0.081 4.081 17 C -0.239 4.239 18 C -0.107 4.107 19 C -0.158 4.158 20 C 0.131 3.869 21 C -0.452 4.452 22 H 0.070 0.930 23 C 0.078 3.922 24 N -0.796 5.796 25 Si 0.897 3.103 26 H -0.268 1.268 27 H -0.277 1.277 28 H -0.261 1.261 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.885 14.701 2.289 15.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.366 5.366 3 C 0.083 3.917 4 C -0.114 4.114 5 N -0.092 5.092 6 O 0.012 5.988 7 C -0.016 4.016 8 C -0.097 4.097 9 C -0.192 4.192 10 C -0.196 4.196 11 N -0.180 5.180 12 C 0.304 3.696 13 O -0.370 6.370 14 C -0.105 4.105 15 C -0.184 4.184 16 C -0.099 4.099 17 C -0.258 4.258 18 C -0.126 4.126 19 C -0.177 4.177 20 C 0.128 3.872 21 C -0.482 4.482 22 H 0.088 0.912 23 C -0.139 4.139 24 N -0.421 5.421 25 Si 0.721 3.279 26 H -0.193 1.193 27 H -0.202 1.202 28 H -0.185 1.185 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.168 0.832 35 H 0.133 0.867 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.134 0.866 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.750 14.518 1.806 14.886 hybrid contribution -0.076 0.318 0.972 1.025 sum -2.825 14.836 2.778 15.356 Atomic orbital electron populations 1.21799 0.79433 1.03406 1.01696 1.48071 1.06865 1.04953 1.76689 1.19485 1.00185 0.86587 0.85448 1.26508 0.87811 0.95715 1.01322 1.74583 1.21414 1.20552 0.92678 1.85212 1.30187 1.56144 1.27245 1.27718 0.86672 0.91193 0.96053 1.20307 0.97201 1.09172 0.83008 1.23183 1.03458 0.96236 0.96347 1.23166 1.04433 0.93578 0.98459 1.72031 1.23994 1.20440 1.01487 1.21409 0.88663 0.84792 0.74779 1.90715 1.13829 1.86581 1.45833 1.20284 0.97785 0.89869 1.02606 1.19058 1.04353 1.00962 0.94003 1.20289 0.97803 0.96444 0.95360 1.20299 1.06300 1.03007 0.96233 1.20675 0.99463 0.98923 0.93494 1.21284 1.00152 0.99927 0.96370 1.17311 0.88193 0.90339 0.91319 1.19380 1.39425 0.98480 0.90935 0.91231 1.25838 0.92494 0.94523 1.01060 1.69808 1.35948 1.06337 1.30047 0.86539 0.79962 0.80324 0.81043 1.19275 1.20243 1.18505 0.92413 0.90429 0.91581 0.88200 0.86865 0.83203 0.86731 0.87928 0.87600 0.86942 0.88787 0.90539 0.89773 0.89670 0.89595 0.86554 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.24 59.85 0.61 1.58 16 2 N -0.63 -10.14 2.86 -182.95 -0.52 -10.67 16 3 C 0.21 3.11 6.03 -5.19 -0.03 3.08 16 4 C 0.16 2.71 7.80 -156.37 -1.22 1.49 16 5 N -0.38 -6.08 12.16 30.90 0.38 -5.70 16 6 O 0.07 1.06 11.08 18.10 0.20 1.26 16 7 C 0.20 3.09 7.97 -13.05 -0.10 2.99 16 8 C -0.08 -0.87 6.33 -91.74 -0.58 -1.45 16 9 C -0.15 -1.56 10.23 -26.74 -0.27 -1.84 16 10 C -0.16 -1.25 10.18 -26.70 -0.27 -1.52 16 11 N -0.45 -8.22 11.55 -9.87 -0.11 -8.33 16 12 C 0.51 10.54 7.28 -10.98 -0.08 10.46 16 13 O -0.50 -12.30 15.61 5.56 0.09 -12.22 16 14 C -0.07 -1.34 3.73 -29.03 -0.11 -1.45 16 15 C -0.18 -4.48 4.43 -103.92 -0.46 -4.94 16 16 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 17 C -0.24 -5.66 10.05 -39.29 -0.39 -6.06 16 18 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 19 C -0.16 -4.30 8.69 -38.87 -0.34 -4.64 16 20 C 0.13 3.57 5.56 -106.82 -0.59 2.98 16 21 C -0.45 -12.25 8.14 -37.74 -0.31 -12.56 16 22 H 0.07 1.89 6.67 -52.49 -0.35 1.54 16 23 C 0.08 2.00 5.16 -17.35 -0.09 1.91 16 24 N -0.80 -20.86 10.96 55.55 0.61 -20.25 16 25 Si 0.90 19.15 29.59 -169.99 -5.03 14.12 16 26 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 27 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 28 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.96 6.44 -51.93 -0.33 0.63 16 31 H 0.07 0.73 8.07 -51.93 -0.42 0.32 16 32 H 0.10 1.12 8.07 -51.93 -0.42 0.70 16 33 H 0.11 1.80 7.42 -51.93 -0.39 1.41 16 34 H 0.15 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.11 0.80 8.01 -51.93 -0.42 0.38 16 38 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.92 6.34 -51.93 -0.33 1.59 16 40 H 0.08 1.30 8.02 -51.93 -0.42 0.88 16 41 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 43 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 44 H 0.12 3.25 6.21 -52.49 -0.33 2.92 16 45 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 385.07 15.07 5.80 5.80 Total: -1.00 -33.72 385.07 -9.53 -43.24 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.91 Total: 8.05 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -5.02 Total: -15.31 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.35 Total: -44.95 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.29 Total: -10.96 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.72 -9.53 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363441013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.437 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds