Wall clock time and date at job start Sat Apr 11 2020 06:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00543 * 2 1 4 4 C 1.50703 * 109.46794 * 90.00038 * 3 2 1 5 5 N 1.29945 * 126.28611 * 270.02399 * 4 3 2 6 6 O 1.21305 * 110.24901 * 179.68238 * 5 4 3 7 7 C 1.33643 * 109.80877 * 0.47556 * 6 5 4 8 8 C 1.50709 * 126.54924 * 179.79771 * 7 6 5 9 9 C 1.52992 * 117.49574 * 59.68598 * 8 7 6 10 10 C 1.52996 * 60.03119 * 252.52064 * 9 8 7 11 11 N 1.31126 * 106.89806 * 359.53204 * 7 6 5 12 12 C 1.34775 * 119.99633 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00326 * 179.97438 * 12 2 1 14 14 C 1.50708 * 120.00296 * 359.97438 * 12 2 1 15 15 C 1.50699 * 109.47249 * 179.97438 * 14 12 2 16 16 C 1.37634 * 120.12497 * 264.99667 * 15 14 12 17 17 C 1.38617 * 120.24592 * 179.97438 * 16 15 14 18 18 C 1.38660 * 120.49983 * 0.02732 * 17 16 15 19 19 C 1.37597 * 120.24896 * 0.02562 * 18 17 16 20 20 C 1.40692 * 120.12466 * 84.73174 * 15 14 12 21 21 C 1.41400 * 120.24942 * 359.97438 * 20 15 14 22 22 H 1.07997 * 119.99588 * 333.89426 * 21 20 15 23 23 C 1.39937 * 119.99993 * 153.89246 * 21 20 15 24 24 N 1.30819 * 120.00320 * 343.71124 * 23 21 20 25 25 Si 1.86800 * 119.99930 * 163.71914 * 23 21 20 26 26 H 1.48500 * 109.47381 * 59.99473 * 25 23 21 27 27 H 1.48499 * 109.47553 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47001 * 299.99701 * 25 23 21 29 29 H 1.08998 * 109.47299 * 89.99384 * 1 2 3 30 30 H 1.08996 * 109.47490 * 209.99604 * 1 2 3 31 31 H 1.08999 * 109.46958 * 329.99875 * 1 2 3 32 32 H 1.09004 * 109.46841 * 330.00613 * 3 2 1 33 33 H 1.08998 * 109.47415 * 210.00203 * 3 2 1 34 34 H 1.08995 * 115.56138 * 205.37231 * 8 7 6 35 35 H 1.09005 * 117.49857 * 145.02260 * 9 8 7 36 36 H 1.09003 * 117.50620 * 0.02562 * 9 8 7 37 37 H 1.09002 * 117.49779 * 107.48087 * 10 9 8 38 38 H 1.09000 * 117.50256 * 252.47676 * 10 9 8 39 39 H 1.09002 * 109.46764 * 300.00478 * 14 12 2 40 40 H 1.08998 * 109.46627 * 59.99960 * 14 12 2 41 41 H 1.07996 * 119.88396 * 0.02562 * 16 15 14 42 42 H 1.07994 * 119.75036 * 180.02562 * 17 16 15 43 43 H 1.08005 * 119.87347 * 179.97438 * 18 17 16 44 44 H 1.07998 * 120.12674 * 179.97438 * 19 18 17 45 45 H 0.97006 * 120.00401 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7036 1.4209 5 7 1.6697 2.4490 2.1461 6 8 2.1513 2.6128 3.2473 7 6 3.3237 1.9764 3.3282 8 6 4.2414 1.9340 4.5229 9 6 3.6846 1.3454 5.8207 10 6 3.9107 2.8538 5.7009 11 7 3.5203 1.3912 2.1713 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1674 -0.0010 14 6 1.3853 -2.4724 -0.0005 15 6 2.3645 -3.6179 -0.0018 16 6 2.7335 -4.2098 -1.1882 17 6 3.6345 -5.2633 -1.1924 18 6 4.1734 -5.7331 -0.0043 19 6 3.8180 -5.1570 1.1937 20 6 2.9092 -4.0825 1.2093 21 6 2.5422 -3.4781 2.4338 22 1 2.2100 -2.4506 2.4505 23 6 2.6093 -4.2112 3.6238 24 7 2.6968 -5.5159 3.5843 25 14 2.5736 -3.3270 5.2689 26 1 1.3081 -2.5596 5.3911 27 1 2.6564 -4.3223 6.3679 28 1 3.7273 -2.3961 5.3556 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5139 32 1 1.6085 2.0283 -0.5138 33 1 3.1500 1.1383 -0.5138 34 1 5.2940 1.7581 4.3014 35 1 4.3710 0.7823 6.4531 36 1 2.6547 0.9884 5.8104 37 1 3.0296 3.4893 5.6113 38 1 4.7456 3.2832 6.2547 39 1 0.7589 -2.5302 0.8897 40 1 0.7583 -2.5298 -0.8903 41 1 2.3203 -3.8518 -2.1196 42 1 3.9188 -5.7216 -2.1280 43 1 4.8742 -6.5547 -0.0192 44 1 4.2386 -5.5248 2.1179 45 1 2.7437 -6.0241 4.4093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363441013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:36 Heat of formation + Delta-G solvation = 66.616408 kcal Electronic energy + Delta-G solvation = -29927.658420 eV Core-core repulsion = 25913.634780 eV Total energy + Delta-G solvation = -4014.023640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -46.71014 -41.03144 -39.24462 -38.46933 -37.38491 -36.19901 -35.52902 -33.71133 -33.10527 -31.37071 -30.08857 -28.36959 -27.26394 -26.59249 -26.05259 -24.47595 -23.38076 -22.84028 -22.28281 -21.46932 -20.06271 -19.25591 -19.06942 -18.62246 -17.97928 -17.41240 -17.28830 -17.08503 -16.77647 -16.21458 -15.78404 -15.45960 -15.39306 -14.65123 -14.58372 -14.39206 -14.20328 -13.84500 -13.61248 -13.47463 -13.40079 -13.28493 -13.09934 -13.01545 -12.89936 -12.76451 -12.70372 -12.53477 -12.50516 -12.18559 -12.15689 -12.08073 -11.62110 -11.34040 -11.22697 -11.06064 -10.86940 -10.65098 -9.89349 -9.23685 -9.17533 -8.62473 -6.31932 -0.04605 0.90791 1.01225 1.14169 1.27251 1.38581 1.49058 1.63727 1.72296 2.15225 2.16242 2.48927 2.75107 2.76666 2.92954 3.58204 3.63087 3.72088 3.85990 3.99168 4.11784 4.19222 4.22408 4.33624 4.37215 4.48698 4.56079 4.59981 4.67391 4.68121 4.71149 4.74115 4.84375 4.86035 4.90273 5.00706 5.04686 5.13135 5.15658 5.35221 5.41816 5.53335 5.74875 6.01256 6.13937 6.20049 6.32290 6.40338 6.71538 6.96907 7.03644 7.09274 7.28257 8.33650 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009386 B = 0.004864 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.461544 B = 5755.109310 C = 7761.212097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.620 5.620 3 C 0.207 3.793 4 C 0.149 3.851 5 N -0.384 5.384 6 O 0.075 5.925 7 C 0.212 3.788 8 C -0.107 4.107 9 C -0.164 4.164 10 C -0.120 4.120 11 N -0.501 5.501 12 C 0.515 3.485 13 O -0.552 6.552 14 C -0.063 4.063 15 C -0.189 4.189 16 C -0.090 4.090 17 C -0.240 4.240 18 C -0.117 4.117 19 C -0.192 4.192 20 C 0.098 3.902 21 C -0.478 4.478 22 H 0.057 0.943 23 C 0.037 3.963 24 N -0.824 5.824 25 Si 0.959 3.041 26 H -0.261 1.261 27 H -0.260 1.260 28 H -0.261 1.261 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.098 0.902 34 H 0.155 0.845 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.145 0.855 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.085 16.446 2.389 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.356 5.356 3 C 0.082 3.918 4 C -0.125 4.125 5 N -0.094 5.094 6 O 0.016 5.984 7 C -0.007 4.007 8 C -0.127 4.127 9 C -0.202 4.202 10 C -0.157 4.157 11 N -0.233 5.233 12 C 0.305 3.695 13 O -0.428 6.428 14 C -0.102 4.102 15 C -0.190 4.190 16 C -0.108 4.108 17 C -0.259 4.259 18 C -0.135 4.135 19 C -0.211 4.211 20 C 0.096 3.904 21 C -0.508 4.508 22 H 0.075 0.925 23 C -0.177 4.177 24 N -0.450 5.450 25 Si 0.780 3.220 26 H -0.185 1.185 27 H -0.184 1.184 28 H -0.186 1.186 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.160 0.840 33 H 0.116 0.884 34 H 0.173 0.827 35 H 0.146 0.854 36 H 0.107 0.893 37 H 0.131 0.869 38 H 0.163 0.837 39 H 0.107 0.893 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.124 0.876 44 H 0.114 0.886 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.001 16.284 1.899 16.875 hybrid contribution 0.279 -0.210 0.865 0.933 sum -3.721 16.074 2.764 16.729 Atomic orbital electron populations 1.22092 0.76700 1.03933 1.04109 1.48015 1.08505 1.04203 1.74868 1.19711 1.00293 0.86818 0.84942 1.26767 0.87744 0.96015 1.01976 1.74532 1.21432 1.20540 0.92855 1.85179 1.30219 1.56034 1.26928 1.28376 0.86516 0.89566 0.96249 1.20639 0.96775 1.12672 0.82636 1.23294 1.02892 0.98613 0.95406 1.23341 1.05425 0.92077 0.94880 1.72036 1.25601 1.22460 1.03251 1.21314 0.87956 0.85945 0.74294 1.90692 1.15950 1.87466 1.48703 1.20272 0.97079 0.88732 1.04110 1.19535 1.04270 1.01674 0.93559 1.20734 0.97576 0.96136 0.96371 1.20730 1.05499 1.02724 0.96958 1.20959 0.99842 0.99405 0.93306 1.21285 1.01683 1.01511 0.96646 1.17693 0.88959 0.91051 0.92742 1.19413 1.41208 0.98042 0.92109 0.92503 1.26594 0.91772 0.95143 1.04189 1.69861 1.36422 1.07488 1.31272 0.85604 0.80023 0.79413 0.77001 1.18501 1.18437 1.18574 0.88951 0.90822 0.90226 0.84009 0.88420 0.82703 0.85417 0.89340 0.86948 0.83748 0.89332 0.86724 0.86387 0.86505 0.87563 0.88554 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.59 10.24 127.77 1.31 2.90 16 2 N -0.62 -19.32 2.86 -851.13 -2.43 -21.76 16 3 C 0.21 6.02 6.03 85.64 0.52 6.54 16 4 C 0.15 5.01 7.80 138.46 1.08 6.09 16 5 N -0.38 -11.88 12.16 -60.31 -0.73 -12.61 16 6 O 0.08 2.19 11.08 74.83 0.83 3.01 16 7 C 0.21 6.44 7.97 88.38 0.70 7.14 16 8 C -0.11 -2.35 6.33 -11.52 -0.07 -2.42 16 9 C -0.16 -3.09 10.23 30.59 0.31 -2.78 16 10 C -0.12 -1.57 10.18 30.61 0.31 -1.25 16 11 N -0.50 -18.84 11.55 -303.19 -3.50 -22.35 16 12 C 0.52 21.11 7.28 87.66 0.64 21.75 16 13 O -0.55 -28.07 15.61 -3.03 -0.05 -28.12 16 14 C -0.06 -2.51 3.73 29.10 0.11 -2.40 16 15 C -0.19 -9.35 4.43 -19.41 -0.09 -9.44 16 16 C -0.09 -4.13 9.66 22.22 0.21 -3.92 16 17 C -0.24 -11.10 10.05 22.46 0.23 -10.87 16 18 C -0.12 -5.87 10.02 22.22 0.22 -5.64 16 19 C -0.19 -10.87 8.69 22.73 0.20 -10.67 16 20 C 0.10 5.53 5.56 -21.29 -0.12 5.41 16 21 C -0.48 -26.96 8.14 23.46 0.19 -26.77 16 22 H 0.06 3.24 6.67 -2.91 -0.02 3.22 16 23 C 0.04 1.98 5.16 85.26 0.44 2.42 16 24 N -0.82 -44.68 10.96 21.82 0.24 -44.44 16 25 Si 0.96 40.03 29.59 68.60 2.03 42.06 16 26 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 27 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 28 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.68 6.44 -2.39 -0.02 1.66 16 31 H 0.08 1.54 8.07 -2.39 -0.02 1.52 16 32 H 0.14 2.82 8.07 -2.38 -0.02 2.80 16 33 H 0.10 3.16 7.42 -2.39 -0.02 3.14 16 34 H 0.16 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.13 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.11 1.36 8.01 -2.39 -0.02 1.35 16 38 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 3.65 6.34 -2.39 -0.02 3.63 16 40 H 0.11 3.61 8.02 -2.39 -0.02 3.60 16 41 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 42 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 43 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 44 H 0.10 5.70 6.21 -2.91 -0.02 5.69 16 45 H 0.29 14.09 8.30 -92.70 -0.77 13.32 16 Total: -1.00 -77.77 385.07 3.60 -74.17 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 1.02 Total: 33.95 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 6.20 Total: -23.92 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -6.43 Total: -101.16 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.78 Total: -25.11 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -77.77 3.60 -74.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363441013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.790 kcal (2) G-P(sol) polarization free energy of solvation -77.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds