Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40300 * 126.06110 * 2 1 4 4 C 1.31322 * 108.24856 * 180.13654 * 3 2 1 5 5 O 1.35993 * 125.99423 * 180.02562 * 4 3 2 6 6 C 1.39628 * 108.07199 * 0.15295 * 4 3 2 7 7 C 1.34239 * 126.06557 * 180.02562 * 2 1 3 8 8 C 1.51011 * 128.11590 * 359.70244 * 7 2 1 9 9 N 1.47403 * 107.24761 * 168.86189 * 8 7 2 10 10 C 1.34776 * 120.81119 * 224.26997 * 9 8 7 11 11 O 1.21285 * 120.00053 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00212 * 180.02562 * 10 9 8 13 13 H 1.09007 * 109.47204 * 299.99562 * 12 10 9 14 14 C 1.50697 * 109.47499 * 59.99511 * 12 10 9 15 15 H 1.08004 * 119.99755 * 24.90700 * 14 12 10 16 16 C 1.37879 * 120.00252 * 204.91476 * 14 12 10 17 17 N 1.31508 * 120.00117 * 5.56242 * 16 14 12 18 18 Si 1.86806 * 119.99963 * 185.56804 * 16 14 12 19 19 H 1.48508 * 109.46908 * 59.99812 * 18 16 14 20 20 H 1.48495 * 109.46942 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47190 * 299.99829 * 18 16 14 22 22 C 1.50706 * 109.47467 * 179.97438 * 12 10 9 23 23 C 1.38229 * 119.99725 * 293.20550 * 22 12 10 24 24 C 1.38237 * 119.99686 * 179.78639 * 23 22 12 25 25 C 1.38237 * 119.99874 * 0.44091 * 24 23 22 26 26 C 1.38232 * 120.00197 * 359.81278 * 25 24 23 27 27 C 1.38234 * 119.99708 * 113.47386 * 22 12 10 28 28 C 1.47036 * 118.37469 * 44.28619 * 9 8 7 29 29 C 1.50792 * 127.81788 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.46933 * 269.99486 * 1 2 3 31 31 H 1.08998 * 109.47467 * 29.99956 * 1 2 3 32 32 H 1.09000 * 109.46904 * 150.00254 * 1 2 3 33 33 H 0.96699 * 113.99936 * 90.02454 * 5 4 3 34 34 H 1.08994 * 109.90237 * 49.41678 * 8 7 2 35 35 H 1.08998 * 109.96035 * 288.33058 * 8 7 2 36 36 H 0.97000 * 120.00398 * 179.97438 * 17 16 14 37 37 H 1.07991 * 120.00509 * 359.97438 * 23 22 12 38 38 H 1.08002 * 120.00495 * 180.27154 * 24 23 22 39 39 H 1.08005 * 119.99849 * 179.83566 * 25 24 23 40 40 H 1.08004 * 120.00273 * 180.02562 * 26 25 24 41 41 H 1.08004 * 120.00494 * 359.97438 * 27 22 12 42 42 H 1.09006 * 109.52365 * 175.55441 * 28 9 8 43 43 H 1.08998 * 109.52245 * 55.35961 * 28 9 8 44 44 H 1.09001 * 109.58105 * 42.11266 * 29 6 4 45 45 H 1.08999 * 109.58227 * 281.84207 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2909 1.1342 0.0000 4 6 3.5411 0.7325 -0.0030 5 8 4.6386 1.5355 -0.0035 6 6 3.5474 -0.6638 -0.0085 7 6 2.2553 -1.0851 -0.0005 8 6 1.8436 -2.5380 0.0050 9 7 3.0523 -3.3358 -0.2699 10 6 3.0172 -4.3646 -1.1398 11 8 1.9825 -4.6436 -1.7077 12 6 4.2637 -5.1684 -1.4067 13 1 5.0398 -4.5142 -1.8040 14 6 4.7429 -5.7939 -0.1222 15 1 4.0451 -5.9806 0.6807 16 6 6.0723 -6.1275 0.0282 17 7 6.9415 -5.8014 -0.9032 18 14 6.6386 -7.0429 1.5550 19 1 5.9296 -8.3449 1.6429 20 1 8.1021 -7.2810 1.4749 21 1 6.3339 -6.2309 2.7605 22 6 3.9579 -6.2517 -2.4088 23 6 3.1047 -7.2853 -2.0705 24 6 2.8208 -8.2766 -2.9912 25 6 3.3972 -8.2391 -4.2471 26 6 4.2545 -7.2083 -4.5836 27 6 4.5350 -6.2146 -3.6644 28 6 4.2969 -2.9818 0.4283 29 6 4.7428 -1.5830 -0.0140 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 4.9578 1.7658 0.8798 34 1 1.0978 -2.7153 -0.7697 35 1 1.4363 -2.8057 0.9800 36 1 7.8768 -6.0358 -0.7972 37 1 2.6576 -7.3168 -1.0880 38 1 2.1507 -9.0819 -2.7284 39 1 3.1774 -9.0150 -4.9655 40 1 4.7045 -7.1787 -5.5650 41 1 5.2047 -5.4091 -3.9274 42 1 5.0723 -3.7068 0.1808 43 1 4.1243 -2.9847 1.5045 44 1 5.4979 -1.2044 0.6750 45 1 5.1593 -1.6346 -1.0199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364306858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = 38.874266 kcal Electronic energy + Delta-G solvation = -30172.362021 eV Core-core repulsion = 26157.135391 eV Total energy + Delta-G solvation = -4015.226630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.56251 -39.37480 -37.89347 -37.26917 -35.77242 -33.83337 -32.98841 -31.19845 -30.90851 -30.16025 -29.92794 -27.53390 -26.22786 -25.43701 -23.72247 -22.72630 -21.58763 -21.21415 -20.87209 -19.51075 -18.11894 -17.66226 -16.87536 -16.51470 -16.09020 -15.71395 -15.57501 -15.38664 -14.80724 -14.50787 -14.32029 -14.09776 -13.84769 -13.61297 -13.37683 -13.20058 -12.88972 -12.69738 -12.51318 -12.31368 -12.26727 -11.89309 -11.84670 -11.65511 -11.48886 -11.28258 -11.09567 -11.01585 -10.79914 -10.40152 -10.30855 -10.10651 -9.90063 -9.50097 -9.10480 -8.81998 -8.63784 -8.19179 -8.12085 -7.93682 -7.61752 -6.32417 -4.37309 1.74532 2.21323 2.38689 2.41086 2.64489 3.17808 3.24778 3.26250 3.55634 3.60979 3.99228 4.23552 4.54781 4.72575 4.81617 5.00188 5.02939 5.20672 5.25582 5.35010 5.48272 5.50856 5.72577 5.78446 5.78901 5.85566 5.87010 5.94186 6.08555 6.21513 6.33095 6.37048 6.49176 6.51914 6.58473 6.71556 6.85252 6.91752 6.95489 7.15051 7.18563 7.37767 7.44746 7.56993 7.58452 7.65255 7.72002 7.93907 8.00338 8.13998 8.62512 9.05420 9.25171 10.75084 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011266 B = 0.004061 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.653923 B = 6892.493507 C = 8188.264345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.352 5.352 3 N -0.314 5.314 4 C 0.261 3.739 5 O -0.459 6.459 6 C -0.238 4.238 7 C 0.083 3.917 8 C 0.177 3.823 9 N -0.605 5.605 10 C 0.536 3.464 11 O -0.564 6.564 12 C 0.056 3.944 13 H 0.087 0.913 14 C -0.517 4.517 15 H 0.064 0.936 16 C 0.077 3.923 17 N -0.872 5.872 18 Si 0.894 3.106 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.010 4.010 23 C -0.084 4.084 24 C -0.136 4.136 25 C -0.148 4.148 26 C -0.133 4.133 27 C -0.115 4.115 28 C 0.100 3.900 29 C -0.054 4.054 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.395 0.605 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.269 0.731 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.144 0.856 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.466 7.191 3.334 10.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.138 5.138 3 N -0.147 5.147 4 C 0.056 3.944 5 O -0.262 6.262 6 C -0.250 4.250 7 C -0.046 4.046 8 C 0.052 3.948 9 N -0.338 5.338 10 C 0.328 3.672 11 O -0.443 6.443 12 C 0.035 3.965 13 H 0.105 0.895 14 C -0.555 4.555 15 H 0.082 0.918 16 C -0.129 4.129 17 N -0.507 5.507 18 Si 0.721 3.279 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.011 4.011 23 C -0.102 4.102 24 C -0.154 4.154 25 C -0.166 4.166 26 C -0.151 4.151 27 C -0.133 4.133 28 C -0.022 4.022 29 C -0.094 4.094 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.250 0.750 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.162 0.838 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.667 8.017 2.359 11.341 hybrid contribution 0.992 -0.910 1.339 1.899 sum -6.675 7.106 3.698 10.427 Atomic orbital electron populations 1.21913 0.73681 1.04796 1.03529 1.47680 1.06136 1.02444 1.57517 1.77469 1.01308 1.07397 1.28571 1.19539 0.85980 0.88264 1.00568 1.84894 1.39432 1.68530 1.33321 1.20143 0.95140 0.93031 1.16684 1.21253 0.90862 0.91236 1.01279 1.19956 0.90156 0.82361 1.02317 1.47986 1.09626 1.31448 1.44781 1.21672 0.91544 0.78441 0.75552 1.90581 1.34141 1.68894 1.50687 1.18099 0.90717 0.92116 0.95532 0.89546 1.20584 0.93791 1.42837 0.98284 0.91809 1.24919 0.96443 0.94839 0.96678 1.69882 1.03232 1.44002 1.33546 0.86608 0.77747 0.80791 0.82783 1.19940 1.21053 1.19844 1.19987 0.92436 0.95969 0.92685 1.20814 0.97283 0.93619 0.98455 1.20949 1.00983 0.99092 0.94376 1.20797 1.00055 0.99021 0.96758 1.20897 0.99573 0.95733 0.98873 1.20978 1.00044 0.98809 0.93480 1.22226 0.87982 0.96467 0.95559 1.20395 0.93379 0.93160 1.02426 0.90455 0.89155 0.89111 0.74960 0.88001 0.90029 0.92093 0.87086 0.87657 0.87778 0.87615 0.87053 0.83828 0.92248 0.90541 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 11.32 59.85 0.68 1.58 16 2 N -0.35 -4.88 4.00 -63.79 -0.26 -5.14 16 3 N -0.31 -4.95 12.60 30.46 0.38 -4.57 16 4 C 0.26 4.07 8.43 -17.25 -0.15 3.93 16 5 O -0.46 -6.11 13.66 -19.72 -0.27 -6.38 16 6 C -0.24 -3.79 5.97 -104.89 -0.63 -4.42 16 7 C 0.08 1.25 6.83 -82.22 -0.56 0.69 16 8 C 0.18 2.69 6.31 -4.55 -0.03 2.66 16 9 N -0.60 -11.00 2.94 -173.51 -0.51 -11.51 16 10 C 0.54 11.47 6.99 -10.99 -0.08 11.39 16 11 O -0.56 -13.14 14.96 5.55 0.08 -13.05 16 12 C 0.06 1.27 1.51 -94.08 -0.14 1.13 16 13 H 0.09 2.07 7.05 -51.93 -0.37 1.71 16 14 C -0.52 -11.98 5.11 -34.44 -0.18 -12.15 16 15 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 16 C 0.08 1.82 5.25 -17.82 -0.09 1.73 16 17 N -0.87 -21.59 12.92 55.43 0.72 -20.87 16 18 Si 0.89 18.89 29.54 -169.99 -5.02 13.87 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 C -0.01 -0.22 4.29 -104.62 -0.45 -0.67 16 23 C -0.08 -1.84 8.35 -39.59 -0.33 -2.17 16 24 C -0.14 -2.65 10.05 -39.58 -0.40 -3.04 16 25 C -0.15 -2.74 10.05 -39.58 -0.40 -3.14 16 26 C -0.13 -2.55 10.05 -39.58 -0.40 -2.95 16 27 C -0.11 -2.48 9.67 -39.58 -0.38 -2.86 16 28 C 0.10 1.70 5.78 -3.58 -0.02 1.68 16 29 C -0.05 -0.85 6.43 -27.67 -0.18 -1.03 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.68 7.76 -51.93 -0.40 0.27 16 33 H 0.39 3.10 9.06 45.56 0.41 3.51 16 34 H 0.10 1.57 7.03 -51.93 -0.37 1.21 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 37 H 0.11 2.45 7.87 -52.49 -0.41 2.04 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 41 H 0.11 2.33 7.96 -52.48 -0.42 1.91 16 42 H 0.14 2.82 4.47 -51.93 -0.23 2.59 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -30.73 374.68 -8.09 -38.81 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.13 Total: 10.83 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -3.73 Total: -7.63 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.33 Total: -42.08 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.19 Total: -19.44 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.73 -8.09 -38.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364306858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.688 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds