Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40300 * 126.06110 * 2 1 4 4 C 1.31322 * 108.24856 * 180.13654 * 3 2 1 5 5 O 1.35993 * 125.99423 * 180.02562 * 4 3 2 6 6 C 1.39628 * 108.07199 * 0.15295 * 4 3 2 7 7 C 1.34239 * 126.06557 * 180.02562 * 2 1 3 8 8 C 1.51011 * 128.11590 * 359.70244 * 7 2 1 9 9 N 1.47403 * 107.24761 * 168.86189 * 8 7 2 10 10 C 1.34776 * 120.81119 * 224.26997 * 9 8 7 11 11 O 1.21285 * 120.00053 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00212 * 180.02562 * 10 9 8 13 13 H 1.09007 * 109.47204 * 299.99562 * 12 10 9 14 14 C 1.50697 * 109.47499 * 59.99511 * 12 10 9 15 15 H 1.08004 * 119.99755 * 24.90700 * 14 12 10 16 16 C 1.37879 * 120.00252 * 204.91476 * 14 12 10 17 17 N 1.31508 * 120.00117 * 5.56242 * 16 14 12 18 18 Si 1.86806 * 119.99963 * 185.56804 * 16 14 12 19 19 H 1.48508 * 109.46908 * 59.99812 * 18 16 14 20 20 H 1.48495 * 109.46942 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47190 * 299.99829 * 18 16 14 22 22 C 1.50706 * 109.47467 * 179.97438 * 12 10 9 23 23 C 1.38229 * 119.99725 * 293.20550 * 22 12 10 24 24 C 1.38237 * 119.99686 * 179.78639 * 23 22 12 25 25 C 1.38237 * 119.99874 * 0.44091 * 24 23 22 26 26 C 1.38232 * 120.00197 * 359.81278 * 25 24 23 27 27 C 1.38234 * 119.99708 * 113.47386 * 22 12 10 28 28 C 1.47036 * 118.37469 * 44.28619 * 9 8 7 29 29 C 1.50792 * 127.81788 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.46933 * 269.99486 * 1 2 3 31 31 H 1.08998 * 109.47467 * 29.99956 * 1 2 3 32 32 H 1.09000 * 109.46904 * 150.00254 * 1 2 3 33 33 H 0.96699 * 113.99936 * 90.02454 * 5 4 3 34 34 H 1.08994 * 109.90237 * 49.41678 * 8 7 2 35 35 H 1.08998 * 109.96035 * 288.33058 * 8 7 2 36 36 H 0.97000 * 120.00398 * 179.97438 * 17 16 14 37 37 H 1.07991 * 120.00509 * 359.97438 * 23 22 12 38 38 H 1.08002 * 120.00495 * 180.27154 * 24 23 22 39 39 H 1.08005 * 119.99849 * 179.83566 * 25 24 23 40 40 H 1.08004 * 120.00273 * 180.02562 * 26 25 24 41 41 H 1.08004 * 120.00494 * 359.97438 * 27 22 12 42 42 H 1.09006 * 109.52365 * 175.55441 * 28 9 8 43 43 H 1.08998 * 109.52245 * 55.35961 * 28 9 8 44 44 H 1.09001 * 109.58105 * 42.11266 * 29 6 4 45 45 H 1.08999 * 109.58227 * 281.84207 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2909 1.1342 0.0000 4 6 3.5411 0.7325 -0.0030 5 8 4.6386 1.5355 -0.0035 6 6 3.5474 -0.6638 -0.0085 7 6 2.2553 -1.0851 -0.0005 8 6 1.8436 -2.5380 0.0050 9 7 3.0523 -3.3358 -0.2699 10 6 3.0172 -4.3646 -1.1398 11 8 1.9825 -4.6436 -1.7077 12 6 4.2637 -5.1684 -1.4067 13 1 5.0398 -4.5142 -1.8040 14 6 4.7429 -5.7939 -0.1222 15 1 4.0451 -5.9806 0.6807 16 6 6.0723 -6.1275 0.0282 17 7 6.9415 -5.8014 -0.9032 18 14 6.6386 -7.0429 1.5550 19 1 5.9296 -8.3449 1.6429 20 1 8.1021 -7.2810 1.4749 21 1 6.3339 -6.2309 2.7605 22 6 3.9579 -6.2517 -2.4088 23 6 3.1047 -7.2853 -2.0705 24 6 2.8208 -8.2766 -2.9912 25 6 3.3972 -8.2391 -4.2471 26 6 4.2545 -7.2083 -4.5836 27 6 4.5350 -6.2146 -3.6644 28 6 4.2969 -2.9818 0.4283 29 6 4.7428 -1.5830 -0.0140 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 4.9578 1.7658 0.8798 34 1 1.0978 -2.7153 -0.7697 35 1 1.4363 -2.8057 0.9800 36 1 7.8768 -6.0358 -0.7972 37 1 2.6576 -7.3168 -1.0880 38 1 2.1507 -9.0819 -2.7284 39 1 3.1774 -9.0150 -4.9655 40 1 4.7045 -7.1787 -5.5650 41 1 5.2047 -5.4091 -3.9274 42 1 5.0723 -3.7068 0.1808 43 1 4.1243 -2.9847 1.5045 44 1 5.4979 -1.2044 0.6750 45 1 5.1593 -1.6346 -1.0199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364306858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = 18.025358 kcal Electronic energy + Delta-G solvation = -30173.266097 eV Core-core repulsion = 26157.135391 eV Total energy + Delta-G solvation = -4016.130706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.72035 -40.96327 -39.42454 -38.33108 -37.24771 -35.56619 -34.05699 -32.89241 -32.21708 -31.50556 -31.39013 -29.11698 -27.22571 -26.90557 -25.38166 -24.03075 -23.17207 -22.54370 -22.15767 -20.88212 -19.45221 -18.99619 -18.49029 -17.88086 -17.58772 -16.96664 -16.94564 -16.75245 -16.24861 -16.02002 -15.68913 -15.48601 -15.30159 -14.86634 -14.68235 -14.54175 -14.23770 -14.00613 -13.92827 -13.74362 -13.52846 -13.27383 -13.18171 -13.02729 -12.90684 -12.79001 -12.71495 -12.46499 -12.23347 -12.09914 -11.90311 -11.62348 -11.24130 -11.17031 -10.60660 -10.38537 -10.20848 -9.63462 -9.52415 -9.30997 -9.22718 -8.14364 -6.22748 0.61579 0.79013 0.82964 1.20897 1.48319 1.49557 1.52033 1.56744 1.88962 2.19513 2.47638 2.91402 3.14255 3.28240 3.44208 3.81165 3.95473 4.14763 4.24832 4.26503 4.32037 4.32763 4.39376 4.44030 4.50492 4.54585 4.56699 4.61831 4.67182 4.78301 4.90912 4.99786 5.10330 5.13651 5.16557 5.24552 5.39061 5.39457 5.48279 5.68318 5.72653 5.81552 5.85588 5.92707 5.98106 6.27071 6.41326 6.48882 6.54288 6.71721 6.78436 7.39092 7.42300 8.93013 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011266 B = 0.004061 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.653923 B = 6892.493507 C = 8188.264345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.346 5.346 3 N -0.332 5.332 4 C 0.257 3.743 5 O -0.467 6.467 6 C -0.260 4.260 7 C 0.081 3.919 8 C 0.181 3.819 9 N -0.603 5.603 10 C 0.533 3.467 11 O -0.588 6.588 12 C 0.061 3.939 13 H 0.061 0.939 14 C -0.509 4.509 15 H 0.058 0.942 16 C 0.043 3.957 17 N -0.899 5.899 18 Si 0.943 3.057 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.260 1.260 22 C -0.036 4.036 23 C -0.107 4.107 24 C -0.136 4.136 25 C -0.144 4.144 26 C -0.132 4.132 27 C -0.141 4.141 28 C 0.103 3.897 29 C -0.045 4.045 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.417 0.583 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.267 0.733 37 H 0.099 0.901 38 H 0.135 0.865 39 H 0.145 0.855 40 H 0.136 0.864 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.704 6.855 3.845 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.131 5.131 3 N -0.167 5.167 4 C 0.053 3.947 5 O -0.273 6.273 6 C -0.272 4.272 7 C -0.049 4.049 8 C 0.056 3.944 9 N -0.335 5.335 10 C 0.325 3.675 11 O -0.469 6.469 12 C 0.040 3.960 13 H 0.079 0.921 14 C -0.547 4.547 15 H 0.076 0.924 16 C -0.160 4.160 17 N -0.535 5.535 18 Si 0.769 3.231 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.184 1.184 22 C -0.037 4.037 23 C -0.126 4.126 24 C -0.154 4.154 25 C -0.162 4.162 26 C -0.150 4.150 27 C -0.159 4.159 28 C -0.019 4.019 29 C -0.084 4.084 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.277 0.723 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.154 0.846 41 H 0.121 0.879 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.116 0.884 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.915 7.729 2.914 12.153 hybrid contribution 1.311 -0.763 1.141 1.898 sum -7.604 6.966 4.055 11.081 Atomic orbital electron populations 1.22358 0.70963 1.06101 1.05590 1.48058 1.07535 1.01426 1.56074 1.77428 1.01591 1.08355 1.29284 1.19623 0.86443 0.88283 1.00385 1.84840 1.38845 1.68115 1.35506 1.20222 0.95414 0.93418 1.18177 1.21184 0.91048 0.91392 1.01275 1.20106 0.88616 0.82000 1.03651 1.47961 1.11130 1.30761 1.43643 1.21434 0.90793 0.79208 0.76086 1.90546 1.34579 1.69922 1.51876 1.17945 0.90631 0.92040 0.95397 0.92090 1.20589 0.93638 1.42206 0.98275 0.92395 1.25438 0.96503 0.95437 0.98641 1.69988 1.03215 1.45268 1.35046 0.85828 0.76914 0.79503 0.80842 1.20691 1.21322 1.18422 1.20116 0.93627 0.96506 0.93405 1.20864 0.98129 0.94721 0.98857 1.21328 1.00897 0.98900 0.94294 1.21254 0.98644 0.99331 0.96992 1.21276 0.99225 0.94919 0.99572 1.21111 1.00762 0.99943 0.94072 1.22140 0.86877 0.96514 0.96335 1.20250 0.94052 0.92443 1.01632 0.87975 0.88085 0.87656 0.72338 0.88175 0.87281 0.92396 0.88243 0.84676 0.83757 0.84616 0.87885 0.86576 0.90403 0.88450 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 11.32 127.77 1.45 2.81 16 2 N -0.35 -8.99 4.00 -355.74 -1.42 -10.41 16 3 N -0.33 -10.06 12.60 -170.70 -2.15 -12.21 16 4 C 0.26 7.79 8.43 85.10 0.72 8.51 16 5 O -0.47 -11.99 13.66 -93.47 -1.28 -13.27 16 6 C -0.26 -8.13 5.97 -20.04 -0.12 -8.25 16 7 C 0.08 2.37 6.83 41.75 0.29 2.66 16 8 C 0.18 5.28 6.31 85.56 0.54 5.82 16 9 N -0.60 -22.09 2.94 -821.24 -2.42 -24.51 16 10 C 0.53 23.49 6.99 87.66 0.61 24.10 16 11 O -0.59 -27.97 14.96 -3.04 -0.05 -28.01 16 12 C 0.06 2.87 1.51 -13.03 -0.02 2.85 16 13 H 0.06 3.14 7.05 -2.38 -0.02 3.12 16 14 C -0.51 -24.25 5.11 25.60 0.13 -24.12 16 15 H 0.06 2.77 7.81 -2.91 -0.02 2.75 16 16 C 0.04 2.06 5.25 84.66 0.44 2.50 16 17 N -0.90 -45.97 12.92 21.45 0.28 -45.69 16 18 Si 0.94 38.95 29.54 68.60 2.03 40.98 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 C -0.04 -1.67 4.29 -19.87 -0.09 -1.75 16 23 C -0.11 -4.77 8.35 22.27 0.19 -4.58 16 24 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 25 C -0.14 -4.96 10.05 22.27 0.22 -4.73 16 26 C -0.13 -4.90 10.05 22.27 0.22 -4.68 16 27 C -0.14 -6.21 9.67 22.27 0.22 -5.99 16 28 C 0.10 3.55 5.78 86.39 0.50 4.05 16 29 C -0.04 -1.41 6.43 29.99 0.19 -1.21 16 30 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.11 1.32 7.76 -2.39 -0.02 1.30 16 33 H 0.42 5.98 9.06 -74.06 -0.67 5.31 16 34 H 0.10 3.00 7.03 -2.39 -0.02 2.98 16 35 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 37 H 0.10 4.51 7.87 -2.92 -0.02 4.48 16 38 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 39 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 40 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 41 H 0.10 4.55 7.96 -2.91 -0.02 4.53 16 42 H 0.12 4.73 4.47 -2.38 -0.01 4.72 16 43 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -67.50 374.68 1.07 -66.43 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.36 Total: 33.58 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 5.72 Total: -6.89 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -5.71 Total: -92.82 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.32 Total: -41.28 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -67.50 1.07 -66.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364306858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.460 kcal (2) G-P(sol) polarization free energy of solvation -67.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds