Wall clock time and date at job start Sat Apr 11 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99770 * 2 1 4 4 C 1.46896 * 111.00242 * 123.95708 * 2 1 3 5 5 C 1.50701 * 109.47219 * 66.04163 * 4 2 1 6 6 C 1.38353 * 119.45315 * 95.00184 * 5 4 2 7 7 C 1.38360 * 119.30337 * 180.02562 * 6 5 4 8 8 C 1.40040 * 118.28525 * 0.02562 * 7 6 5 9 9 C 1.47806 * 120.55809 * 179.97438 * 8 7 6 10 10 O 1.21570 * 120.00372 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99741 * 179.97438 * 9 8 7 12 12 C 1.39913 * 119.99646 * 175.48452 * 11 9 8 13 13 C 1.38940 * 120.00690 * 35.13430 * 12 11 9 14 14 C 1.37998 * 119.99739 * 180.02562 * 13 12 11 15 15 C 1.38910 * 120.00024 * 0.02562 * 14 13 12 16 16 O 1.35780 * 119.99201 * 180.02562 * 15 14 13 17 17 C 1.34809 * 117.00258 * 5.34958 * 16 15 14 18 18 H 1.08001 * 119.99608 * 354.96647 * 17 16 15 19 19 C 1.38634 * 119.99888 * 174.96269 * 17 16 15 20 20 N 1.31568 * 120.00054 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99858 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46958 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47237 * 120.00069 * 21 19 17 24 24 H 1.48506 * 109.47048 * 240.00381 * 21 19 17 25 25 C 1.38907 * 120.01216 * 0.26882 * 15 14 13 26 26 C 1.38002 * 119.99958 * 359.45331 * 25 15 14 27 27 C 1.39539 * 118.87795 * 0.24906 * 8 7 6 28 28 N 1.31690 * 120.56314 * 359.47801 * 27 8 7 29 29 H 1.08999 * 109.47329 * 296.04485 * 1 2 3 30 30 H 1.08996 * 109.47391 * 56.04391 * 1 2 3 31 31 H 1.09003 * 109.47168 * 176.04434 * 1 2 3 32 32 H 1.08999 * 109.46404 * 183.95701 * 3 2 1 33 33 H 1.08993 * 109.46982 * 303.95413 * 3 2 1 34 34 H 1.08993 * 109.47084 * 63.95689 * 3 2 1 35 35 H 1.09009 * 109.46824 * 306.04459 * 4 2 1 36 36 H 1.08997 * 109.47448 * 186.04498 * 4 2 1 37 37 H 1.08002 * 120.35141 * 0.04382 * 6 5 4 38 38 H 1.08000 * 120.85608 * 179.97438 * 7 6 5 39 39 H 0.97000 * 120.00006 * 355.48185 * 11 9 8 40 40 H 1.07996 * 120.00199 * 0.02562 * 13 12 11 41 41 H 1.07997 * 119.99784 * 179.97438 * 14 13 12 42 42 H 0.97003 * 119.99565 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.00229 * 179.72602 * 25 15 14 44 44 H 1.08002 * 120.00198 * 180.27131 * 26 25 15 45 45 H 1.08001 * 119.71723 * 179.75227 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6369 -2.2204 0.9728 6 6 2.5477 -3.0839 0.3905 7 6 2.2150 -4.4185 0.2403 8 6 0.9580 -4.8435 0.6878 9 6 0.5505 -6.2578 0.5516 10 8 1.3092 -7.0632 0.0481 11 7 -0.6619 -6.6546 0.9867 12 6 -1.0853 -7.9709 0.7730 13 6 -0.1668 -9.0124 0.8188 14 6 -0.5846 -10.3105 0.6076 15 6 -1.9233 -10.5759 0.3486 16 8 -2.3342 -11.8533 0.1413 17 6 -1.4166 -12.8264 0.3096 18 1 -0.3884 -12.5690 0.5168 19 6 -1.7929 -14.1575 0.2167 20 7 -3.0454 -14.4710 -0.0363 21 14 -0.5215 -15.5060 0.4506 22 1 0.8045 -14.8945 0.7215 23 1 -0.9150 -16.3639 1.5969 24 1 -0.4429 -16.3313 -0.7815 25 6 -2.8407 -9.5342 0.2967 26 6 -2.4242 -8.2365 0.5136 27 6 0.0944 -3.9081 1.2591 28 7 0.4593 -2.6491 1.3848 29 1 -0.3634 0.4512 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0827 1.3432 -0.0709 33 1 1.5897 1.9163 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5611 -0.3872 2.0628 36 1 3.0797 -0.6612 1.1755 37 1 3.5083 -2.7202 0.0569 38 1 2.9067 -5.1144 -0.2112 39 1 -1.2408 -6.0277 1.4479 40 1 0.8740 -8.8060 1.0198 41 1 0.1294 -11.1200 0.6427 42 1 -3.3085 -15.4024 -0.1016 43 1 -3.8807 -9.7402 0.0910 44 1 -3.1382 -7.4270 0.4776 45 1 -0.8799 -4.2203 1.6051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411598431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:57 Heat of formation + Delta-G solvation = 20.420101 kcal Electronic energy + Delta-G solvation = -27544.850070 eV Core-core repulsion = 23528.823208 eV Total energy + Delta-G solvation = -4016.026862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.05353 -39.82848 -38.63953 -37.52984 -36.51550 -34.18571 -32.88128 -32.43406 -32.07996 -30.22996 -28.71093 -27.95969 -27.33838 -25.32683 -24.30993 -23.72728 -22.50444 -21.96680 -21.33331 -20.28330 -18.54094 -17.88186 -17.36742 -16.98096 -16.48140 -16.11867 -16.07570 -15.44921 -15.16724 -15.11852 -14.65806 -14.50558 -14.21399 -13.81371 -13.66807 -13.56393 -13.49961 -13.36201 -12.91307 -12.82151 -12.69351 -12.52307 -12.21512 -12.05393 -11.95950 -11.77503 -11.61723 -11.53970 -11.05444 -10.77811 -10.42599 -10.22149 -10.20481 -9.74155 -9.66482 -9.45900 -9.20409 -8.83740 -8.72139 -8.23036 -6.97357 -6.45878 -4.03221 0.29203 0.89206 2.08946 2.20364 2.75975 3.11188 3.14618 3.15214 3.20725 3.39436 3.69381 3.86814 3.97063 4.20236 4.47002 4.49987 4.55725 4.69759 4.73883 4.81877 4.93286 4.97492 5.08680 5.16729 5.21163 5.23919 5.25641 5.27719 5.39995 5.64506 5.65913 5.69590 5.75809 5.77119 6.08726 6.14277 6.18791 6.30770 6.45755 6.51512 6.69315 6.82758 6.97334 7.05997 7.28477 7.41891 7.48819 7.60211 7.74130 7.99368 8.23719 9.00025 9.68896 10.71969 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.033274 B = 0.001752 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.288186 B =15974.146759 C =16597.850712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.025 3.975 4 C 0.101 3.899 5 C 0.151 3.849 6 C -0.157 4.157 7 C -0.016 4.016 8 C -0.179 4.179 9 C 0.553 3.447 10 O -0.519 6.519 11 N -0.651 5.651 12 C 0.029 3.971 13 C -0.062 4.062 14 C -0.221 4.221 15 C 0.148 3.852 16 O -0.176 6.176 17 C -0.390 4.390 18 H 0.094 0.906 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.178 4.178 26 C -0.090 4.090 27 C 0.134 3.866 28 N -0.482 5.482 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.027 0.973 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.401 0.599 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.270 0.730 43 H 0.122 0.878 44 H 0.116 0.884 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.922 28.467 3.177 30.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.123 4.123 4 C -0.027 4.027 5 C 0.013 3.987 6 C -0.178 4.178 7 C -0.043 4.043 8 C -0.184 4.184 9 C 0.340 3.660 10 O -0.396 6.396 11 N -0.296 5.296 12 C -0.063 4.063 13 C -0.082 4.082 14 C -0.241 4.241 15 C 0.094 3.906 16 O -0.079 6.079 17 C -0.467 4.467 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.198 4.198 26 C -0.110 4.110 27 C -0.025 4.025 28 N -0.191 5.191 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.236 0.764 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.079 0.921 43 H 0.140 0.860 44 H 0.134 0.866 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.698 27.970 2.656 29.411 hybrid contribution 0.593 -0.576 0.663 1.060 sum 9.290 27.394 3.319 29.116 Atomic orbital electron populations 1.22445 0.86433 1.03207 1.00332 1.61974 1.08991 1.13853 1.41855 1.22399 1.00831 0.88256 1.00848 1.21030 1.00556 0.88046 0.93067 1.21206 0.89325 0.95944 0.92211 1.21923 1.01664 0.93362 1.00814 1.21775 0.94535 0.95693 0.92279 1.21030 0.97277 0.94959 1.05145 1.18049 0.82169 0.87083 0.78684 1.90796 1.51572 1.53657 1.43578 1.43054 1.17680 1.11637 1.57203 1.17216 0.93672 0.82437 1.12944 1.20854 0.99023 0.90971 0.97327 1.21107 0.96138 0.96706 1.10140 1.19425 0.92091 0.86472 0.92641 1.83972 1.38525 1.10334 1.75042 1.21400 0.90573 0.84323 1.50368 0.88909 1.25292 0.97313 0.97354 0.96557 1.70054 1.15943 1.18918 1.44721 0.85642 0.79541 0.79935 0.78304 1.19032 1.20130 1.20128 1.19991 0.99079 0.90478 1.10222 1.20362 0.93659 0.96086 1.00896 1.22925 0.98604 0.87890 0.93058 1.67483 1.17410 1.16553 1.17665 0.95195 0.91620 0.90554 0.91142 0.91014 0.95403 0.92528 0.88879 0.83956 0.83251 0.76388 0.85679 0.85130 0.92056 0.85966 0.86634 0.82344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.25 60.06 0.56 0.74 16 2 N -0.54 -3.95 5.01 -252.73 -1.27 -5.22 16 3 C 0.02 0.12 9.57 60.07 0.57 0.70 16 4 C 0.10 0.69 5.27 -4.98 -0.03 0.67 16 5 C 0.15 1.32 5.70 -82.51 -0.47 0.85 16 6 C -0.16 -1.31 9.70 -39.49 -0.38 -1.69 16 7 C -0.02 -0.17 9.72 -38.86 -0.38 -0.54 16 8 C -0.18 -2.00 5.89 -104.82 -0.62 -2.62 16 9 C 0.55 7.97 7.62 -12.35 -0.09 7.87 16 10 O -0.52 -9.43 13.85 5.30 0.07 -9.36 16 11 N -0.65 -8.83 5.28 -10.69 -0.06 -8.88 16 12 C 0.03 0.52 6.30 -83.65 -0.53 -0.01 16 13 C -0.06 -1.24 8.69 -39.41 -0.34 -1.58 16 14 C -0.22 -4.97 9.16 -39.42 -0.36 -5.33 16 15 C 0.15 3.57 6.65 -39.09 -0.26 3.31 16 16 O -0.18 -5.00 9.75 0.02 0.00 -5.00 16 17 C -0.39 -10.95 9.48 30.88 0.29 -10.65 16 18 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 21 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 C -0.18 -3.66 9.98 -39.42 -0.39 -4.06 16 26 C -0.09 -1.54 9.96 -39.41 -0.39 -1.94 16 27 C 0.13 1.27 10.71 -17.13 -0.18 1.09 16 28 N -0.48 -4.71 8.81 -9.13 -0.08 -4.79 16 29 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 31 H 0.08 0.70 6.34 -51.93 -0.33 0.37 16 32 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 33 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 34 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.06 0.39 8.12 -51.92 -0.42 -0.03 16 36 H 0.09 0.45 7.96 -51.93 -0.41 0.04 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.15 1.48 7.74 -52.49 -0.41 1.08 16 39 H 0.40 3.86 6.90 -40.82 -0.28 3.58 16 40 H 0.13 2.48 6.22 -52.49 -0.33 2.15 16 41 H 0.13 2.96 5.63 -52.49 -0.30 2.67 16 42 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 44 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.16 1.09 6.43 -52.49 -0.34 0.75 16 LS Contribution 380.07 15.07 5.73 5.73 Total: -1.00 -33.83 380.07 -8.57 -42.39 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.60 Total: 6.16 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.10 Total: -12.22 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.64 Total: -43.32 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.07 Total: -14.36 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.83 -8.57 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411598431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.813 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds