Wall clock time and date at job start Sat Apr 11 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99770 * 2 1 4 4 C 1.46896 * 111.00242 * 123.95708 * 2 1 3 5 5 C 1.50701 * 109.47219 * 66.04163 * 4 2 1 6 6 C 1.38353 * 119.45315 * 95.00184 * 5 4 2 7 7 C 1.38360 * 119.30337 * 180.02562 * 6 5 4 8 8 C 1.40040 * 118.28525 * 0.02562 * 7 6 5 9 9 C 1.47806 * 120.55809 * 179.97438 * 8 7 6 10 10 O 1.21570 * 120.00372 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99741 * 179.97438 * 9 8 7 12 12 C 1.39913 * 119.99646 * 175.48452 * 11 9 8 13 13 C 1.38940 * 120.00690 * 35.13430 * 12 11 9 14 14 C 1.37998 * 119.99739 * 180.02562 * 13 12 11 15 15 C 1.38910 * 120.00024 * 0.02562 * 14 13 12 16 16 O 1.35780 * 119.99201 * 180.02562 * 15 14 13 17 17 C 1.34809 * 117.00258 * 5.34958 * 16 15 14 18 18 H 1.08001 * 119.99608 * 354.96647 * 17 16 15 19 19 C 1.38634 * 119.99888 * 174.96269 * 17 16 15 20 20 N 1.31568 * 120.00054 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99858 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46958 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47237 * 120.00069 * 21 19 17 24 24 H 1.48506 * 109.47048 * 240.00381 * 21 19 17 25 25 C 1.38907 * 120.01216 * 0.26882 * 15 14 13 26 26 C 1.38002 * 119.99958 * 359.45331 * 25 15 14 27 27 C 1.39539 * 118.87795 * 0.24906 * 8 7 6 28 28 N 1.31690 * 120.56314 * 359.47801 * 27 8 7 29 29 H 1.08999 * 109.47329 * 296.04485 * 1 2 3 30 30 H 1.08996 * 109.47391 * 56.04391 * 1 2 3 31 31 H 1.09003 * 109.47168 * 176.04434 * 1 2 3 32 32 H 1.08999 * 109.46404 * 183.95701 * 3 2 1 33 33 H 1.08993 * 109.46982 * 303.95413 * 3 2 1 34 34 H 1.08993 * 109.47084 * 63.95689 * 3 2 1 35 35 H 1.09009 * 109.46824 * 306.04459 * 4 2 1 36 36 H 1.08997 * 109.47448 * 186.04498 * 4 2 1 37 37 H 1.08002 * 120.35141 * 0.04382 * 6 5 4 38 38 H 1.08000 * 120.85608 * 179.97438 * 7 6 5 39 39 H 0.97000 * 120.00006 * 355.48185 * 11 9 8 40 40 H 1.07996 * 120.00199 * 0.02562 * 13 12 11 41 41 H 1.07997 * 119.99784 * 179.97438 * 14 13 12 42 42 H 0.97003 * 119.99565 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.00229 * 179.72602 * 25 15 14 44 44 H 1.08002 * 120.00198 * 180.27131 * 26 25 15 45 45 H 1.08001 * 119.71723 * 179.75227 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6369 -2.2204 0.9728 6 6 2.5477 -3.0839 0.3905 7 6 2.2150 -4.4185 0.2403 8 6 0.9580 -4.8435 0.6878 9 6 0.5505 -6.2578 0.5516 10 8 1.3092 -7.0632 0.0481 11 7 -0.6619 -6.6546 0.9867 12 6 -1.0853 -7.9709 0.7730 13 6 -0.1668 -9.0124 0.8188 14 6 -0.5846 -10.3105 0.6076 15 6 -1.9233 -10.5759 0.3486 16 8 -2.3342 -11.8533 0.1413 17 6 -1.4166 -12.8264 0.3096 18 1 -0.3884 -12.5690 0.5168 19 6 -1.7929 -14.1575 0.2167 20 7 -3.0454 -14.4710 -0.0363 21 14 -0.5215 -15.5060 0.4506 22 1 0.8045 -14.8945 0.7215 23 1 -0.9150 -16.3639 1.5969 24 1 -0.4429 -16.3313 -0.7815 25 6 -2.8407 -9.5342 0.2967 26 6 -2.4242 -8.2365 0.5136 27 6 0.0944 -3.9081 1.2591 28 7 0.4593 -2.6491 1.3848 29 1 -0.3634 0.4512 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0827 1.3432 -0.0709 33 1 1.5897 1.9163 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5611 -0.3872 2.0628 36 1 3.0797 -0.6612 1.1755 37 1 3.5083 -2.7202 0.0569 38 1 2.9067 -5.1144 -0.2112 39 1 -1.2408 -6.0277 1.4479 40 1 0.8740 -8.8060 1.0198 41 1 0.1294 -11.1200 0.6427 42 1 -3.3085 -15.4024 -0.1016 43 1 -3.8807 -9.7402 0.0910 44 1 -3.1382 -7.4270 0.4776 45 1 -0.8799 -4.2203 1.6051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411598431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:57 Heat of formation + Delta-G solvation = -3.274951 kcal Electronic energy + Delta-G solvation = -27545.877565 eV Core-core repulsion = 23528.823208 eV Total energy + Delta-G solvation = -4017.054357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.00450 -41.04994 -40.20360 -38.29045 -37.95643 -35.58548 -34.22530 -33.64434 -33.05099 -31.87692 -29.93777 -28.46825 -28.35003 -27.24092 -25.14487 -24.53867 -23.94458 -23.14950 -22.30501 -21.49256 -20.08786 -19.43012 -18.68880 -18.30499 -17.42558 -17.04473 -16.70438 -16.50102 -16.31090 -16.21774 -15.84241 -15.73548 -15.51159 -15.35894 -15.22351 -14.70793 -14.49204 -14.39833 -14.20522 -14.02480 -13.58892 -13.31651 -13.28592 -13.21006 -13.18312 -12.74744 -12.69596 -12.55882 -12.46419 -12.45090 -12.11610 -11.49385 -11.36201 -10.98757 -10.96617 -10.59241 -10.50449 -10.18862 -9.85495 -9.34779 -8.65066 -8.47765 -6.14431 -0.52261 0.17789 0.51239 0.56935 1.35092 1.41902 1.52911 1.70654 1.96758 2.17502 2.62512 2.81056 3.02602 3.14637 3.27753 3.50185 3.58494 3.62191 3.77418 3.93154 4.09223 4.11253 4.16621 4.32011 4.36805 4.46836 4.54772 4.58552 4.63503 4.65982 4.69899 4.74270 4.79303 5.01042 5.02121 5.07600 5.08580 5.09880 5.11115 5.31999 5.42477 5.49436 5.55365 5.68674 5.95550 6.01492 6.04508 6.12502 6.40942 6.78336 6.96969 7.07684 7.75879 8.75037 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.033274 B = 0.001752 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.288186 B =15974.146759 C =16597.850712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.555 5.555 3 C 0.025 3.975 4 C 0.101 3.899 5 C 0.151 3.849 6 C -0.152 4.152 7 C -0.024 4.024 8 C -0.195 4.195 9 C 0.557 3.443 10 O -0.561 6.561 11 N -0.640 5.640 12 C 0.058 3.942 13 C -0.074 4.074 14 C -0.229 4.229 15 C 0.109 3.891 16 O -0.226 6.226 17 C -0.414 4.414 18 H 0.098 0.902 19 C -0.020 4.020 20 N -0.917 5.917 21 Si 1.016 2.984 22 H -0.256 1.256 23 H -0.266 1.266 24 H -0.268 1.268 25 C -0.179 4.179 26 C -0.074 4.074 27 C 0.141 3.859 28 N -0.493 5.493 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.056 0.944 36 H 0.116 0.884 37 H 0.169 0.831 38 H 0.146 0.854 39 H 0.424 0.576 40 H 0.127 0.873 41 H 0.117 0.883 42 H 0.273 0.727 43 H 0.130 0.870 44 H 0.169 0.831 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.068 32.164 3.854 33.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.279 5.279 3 C -0.123 4.123 4 C -0.027 4.027 5 C 0.014 3.986 6 C -0.172 4.172 7 C -0.051 4.051 8 C -0.200 4.200 9 C 0.347 3.653 10 O -0.440 6.440 11 N -0.287 5.287 12 C -0.035 4.035 13 C -0.094 4.094 14 C -0.249 4.249 15 C 0.058 3.942 16 O -0.133 6.133 17 C -0.490 4.490 18 H 0.115 0.885 19 C -0.218 4.218 20 N -0.555 5.555 21 Si 0.836 3.164 22 H -0.179 1.179 23 H -0.191 1.191 24 H -0.192 1.192 25 C -0.199 4.199 26 C -0.093 4.093 27 C -0.017 4.017 28 N -0.202 5.202 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.134 0.866 37 H 0.187 0.813 38 H 0.163 0.837 39 H 0.264 0.736 40 H 0.144 0.856 41 H 0.135 0.865 42 H 0.082 0.918 43 H 0.148 0.852 44 H 0.186 0.814 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 9.847 31.775 3.359 33.435 hybrid contribution 0.317 -1.215 0.476 1.343 sum 10.164 30.560 3.836 32.434 Atomic orbital electron populations 1.22383 0.86935 1.02173 1.00644 1.61989 1.08712 1.15179 1.42039 1.22449 1.01543 0.87073 1.01214 1.21128 1.01943 0.86675 0.92920 1.21655 0.88940 0.97051 0.90993 1.22166 1.02676 0.92312 1.00075 1.21898 0.94281 0.96610 0.92264 1.20778 0.98451 0.93139 1.07633 1.18529 0.81442 0.88103 0.77271 1.90787 1.52744 1.55141 1.45361 1.42948 1.18095 1.10302 1.57347 1.17350 0.93442 0.83689 1.09048 1.20937 0.99774 0.90730 0.97979 1.21095 0.95525 0.97591 1.10712 1.19958 0.93540 0.86137 0.94579 1.83936 1.39397 1.11814 1.78131 1.21814 0.91048 0.85146 1.50988 0.88492 1.26520 0.99672 0.99584 0.95977 1.70181 1.18300 1.19613 1.47364 0.84561 0.76855 0.76344 0.78645 1.17948 1.19065 1.19248 1.20330 0.99089 0.91031 1.09464 1.20798 0.94316 0.95936 0.98273 1.23253 0.99124 0.87442 0.91917 1.67590 1.18016 1.16445 1.18173 0.95151 0.91053 0.92228 0.89910 0.90721 0.94972 0.92588 0.86605 0.81324 0.83651 0.73591 0.85553 0.86516 0.91776 0.85185 0.81370 0.79889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.25 127.69 1.18 1.53 16 2 N -0.55 -6.55 5.01 -953.48 -4.78 -11.32 16 3 C 0.02 0.18 9.57 127.69 1.22 1.40 16 4 C 0.10 1.07 5.27 85.56 0.45 1.52 16 5 C 0.15 2.22 5.70 42.57 0.24 2.46 16 6 C -0.15 -2.11 9.70 22.33 0.22 -1.89 16 7 C -0.02 -0.45 9.72 22.74 0.22 -0.23 16 8 C -0.19 -3.93 5.89 -20.00 -0.12 -4.05 16 9 C 0.56 15.00 7.62 86.77 0.66 15.66 16 10 O -0.56 -20.03 13.85 -3.93 -0.05 -20.09 16 11 N -0.64 -15.39 5.28 -305.99 -1.62 -17.01 16 12 C 0.06 1.91 6.30 38.19 0.24 2.15 16 13 C -0.07 -2.97 8.69 22.38 0.19 -2.78 16 14 C -0.23 -10.72 9.16 22.37 0.20 -10.52 16 15 C 0.11 5.46 6.65 22.59 0.15 5.61 16 16 O -0.23 -13.68 9.75 -22.86 -0.22 -13.91 16 17 C -0.41 -24.55 9.48 67.91 0.64 -23.90 16 18 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 19 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 20 N -0.92 -56.30 13.67 21.61 0.30 -56.00 16 21 Si 1.02 43.74 29.55 68.60 2.03 45.76 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 C -0.18 -7.32 9.98 22.37 0.22 -7.10 16 26 C -0.07 -2.31 9.96 22.38 0.22 -2.09 16 27 C 0.14 2.26 10.71 85.03 0.91 3.17 16 28 N -0.49 -8.24 8.81 -182.81 -1.61 -9.85 16 29 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16 31 H 0.06 0.97 6.34 -2.39 -0.02 0.95 16 32 H 0.08 0.40 8.12 -2.39 -0.02 0.38 16 33 H 0.07 0.50 8.12 -2.39 -0.02 0.48 16 34 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.06 0.62 8.12 -2.38 -0.02 0.60 16 36 H 0.12 0.68 7.96 -2.39 -0.02 0.66 16 37 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.15 2.76 7.74 -2.91 -0.02 2.74 16 39 H 0.42 6.33 6.90 -92.71 -0.64 5.69 16 40 H 0.13 5.04 6.22 -2.91 -0.02 5.02 16 41 H 0.12 5.65 5.63 -2.91 -0.02 5.63 16 42 H 0.27 15.31 8.31 -92.71 -0.77 14.53 16 43 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 44 H 0.17 3.57 8.06 -2.91 -0.02 3.54 16 45 H 0.18 1.78 6.43 -2.91 -0.02 1.76 16 Total: -1.00 -78.98 380.07 1.77 -77.20 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.40 Total: 24.93 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 7.33 Total: -19.72 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -7.71 Total: -94.18 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.28 Total: -34.00 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -78.98 1.77 -77.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411598431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.927 kcal (2) G-P(sol) polarization free energy of solvation -78.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds