Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34951 * 126.03350 * 2 1 4 4 C 1.35324 * 107.74399 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.03983 * 179.97438 * 4 3 2 6 6 H 1.09008 * 115.55047 * 334.28100 * 5 4 3 7 7 C 1.52997 * 117.50098 * 188.60969 * 5 4 3 8 8 C 1.53003 * 60.00248 * 252.50802 * 7 5 4 9 9 H 1.08998 * 117.49514 * 107.48338 * 8 7 5 10 10 C 1.50695 * 117.50320 * 252.51038 * 8 7 5 11 11 O 1.21282 * 120.00166 * 68.61731 * 10 8 7 12 12 N 1.34772 * 119.99960 * 248.62191 * 10 8 7 13 13 C 1.46500 * 120.00207 * 179.97438 * 12 10 8 14 14 C 1.50706 * 109.47476 * 179.97438 * 13 12 10 15 15 C 1.38321 * 119.96369 * 269.73241 * 14 13 12 16 16 C 1.38281 * 120.13449 * 179.76421 * 15 14 13 17 17 C 1.38123 * 120.06997 * 0.50731 * 16 15 14 18 18 C 1.38856 * 119.92700 * 359.74459 * 17 16 15 19 19 O 1.35757 * 120.06561 * 179.97438 * 18 17 16 20 20 C 1.34823 * 116.99952 * 354.48690 * 19 18 17 21 21 H 1.07997 * 120.00421 * 5.06487 * 20 19 18 22 22 C 1.38655 * 120.00049 * 185.05214 * 20 19 18 23 23 N 1.31559 * 119.99913 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00269 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46920 * 90.00486 * 24 22 20 26 26 H 1.48500 * 109.47387 * 210.00352 * 24 22 20 27 27 H 1.48496 * 109.47288 * 330.00729 * 24 22 20 28 28 C 1.38077 * 119.96402 * 90.00175 * 14 13 12 29 29 C 1.39870 * 107.91995 * 0.02562 * 4 3 2 30 30 N 1.30836 * 108.19976 * 0.02562 * 29 4 3 31 31 H 1.09002 * 109.47248 * 89.99830 * 1 2 3 32 32 H 1.09005 * 109.46914 * 209.99808 * 1 2 3 33 33 H 1.08998 * 109.47612 * 329.99624 * 1 2 3 34 34 H 1.08001 * 126.12965 * 359.71775 * 3 2 1 35 35 H 1.09001 * 117.49714 * 0.02562 * 7 5 4 36 36 H 1.09007 * 117.50144 * 144.99755 * 7 5 4 37 37 H 0.97003 * 120.00012 * 0.02562 * 12 10 8 38 38 H 1.08996 * 109.47592 * 300.00349 * 13 12 10 39 39 H 1.09005 * 109.46763 * 60.00374 * 13 12 10 40 40 H 1.07996 * 119.93607 * 359.97438 * 15 14 13 41 41 H 1.07998 * 119.96322 * 180.24824 * 16 15 14 42 42 H 1.07998 * 120.03385 * 179.71886 * 17 16 15 43 43 H 0.96996 * 120.00145 * 179.97438 * 23 22 20 44 44 H 1.08002 * 120.03448 * 359.95742 * 28 14 13 45 45 H 1.08001 * 125.89672 * 179.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7679 1.5454 0.0002 6 1 4.6333 2.5391 -0.4273 7 6 6.1243 0.8672 -0.2022 8 6 5.7371 1.4072 1.1761 9 1 5.4892 0.6805 1.9498 10 6 6.4326 2.6553 1.6550 11 8 6.2148 3.7174 1.1115 12 7 7.2968 2.5913 2.6872 13 6 7.9734 3.8045 3.1525 14 6 8.8780 3.4634 4.3085 15 6 8.3954 3.5204 5.6036 16 6 9.2210 3.2034 6.6666 17 6 10.5337 2.8389 6.4388 18 6 11.0224 2.7858 5.1402 19 8 12.3123 2.4284 4.9130 20 6 13.0971 2.2485 5.9944 21 1 12.6727 2.3087 6.9857 22 6 14.4491 1.9859 5.8339 23 7 14.9661 1.9128 4.6264 24 14 15.5363 1.7359 7.3322 25 1 15.5539 0.2963 7.6963 26 1 16.9174 2.1849 7.0220 27 1 15.0020 2.5276 8.4692 28 6 10.1892 3.0997 4.0742 29 6 3.5347 -0.7320 0.0003 30 7 2.2891 -1.1327 -0.0009 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.9280 2.1194 -0.0043 35 1 6.1312 -0.2146 -0.3355 36 1 6.8821 1.4145 -0.7628 37 1 7.4713 1.7417 3.1217 38 1 8.5651 4.2251 2.3395 39 1 7.2303 4.5335 3.4760 40 1 7.3708 3.8097 5.7847 41 1 8.8402 3.2449 7.6764 42 1 11.1792 2.5958 7.2698 43 1 15.9119 1.7295 4.5141 44 1 10.5664 3.0590 3.0630 45 1 4.4054 -1.3709 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435130627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = 66.314505 kcal Electronic energy + Delta-G solvation = -27132.952834 eV Core-core repulsion = 23118.916103 eV Total energy + Delta-G solvation = -4014.036732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.58496 -39.92134 -39.07983 -37.11153 -36.46030 -34.44807 -33.36085 -32.34271 -30.91430 -30.40082 -29.16370 -27.29741 -26.32293 -25.27524 -23.53988 -23.19675 -21.71501 -21.32397 -20.81927 -20.31864 -19.84265 -17.94200 -17.46956 -17.20101 -16.73354 -15.88184 -15.69087 -15.40278 -15.05679 -14.82034 -14.72490 -14.44984 -14.28466 -14.12076 -13.63694 -13.48615 -13.42883 -13.18507 -12.88694 -12.71842 -12.57204 -12.42154 -12.18047 -12.07423 -11.68709 -11.40024 -11.12729 -10.94832 -10.84635 -10.80517 -10.70271 -10.63481 -10.48392 -9.86625 -9.75022 -9.41813 -8.96588 -8.89783 -8.55016 -8.24253 -7.33823 -6.49774 -4.09345 1.53388 1.89378 2.17502 2.25932 2.30322 2.63707 3.09162 3.10824 3.15616 3.37627 3.83670 3.92045 4.13089 4.47379 4.51058 4.62416 4.64002 4.70981 4.77544 4.88026 4.93615 4.97115 5.05383 5.08250 5.12564 5.28257 5.34422 5.52290 5.55043 5.71650 5.73899 5.82839 5.83976 5.93388 6.05974 6.07266 6.24481 6.30401 6.50793 6.54832 6.64129 6.80846 6.98673 7.17888 7.26382 7.34780 7.35970 7.60480 7.70979 7.94276 8.29023 8.95543 9.64066 10.67923 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.001705 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.488573 B =16423.079411 C =16750.683787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.378 5.378 3 C 0.065 3.935 4 C -0.206 4.206 5 C -0.040 4.040 6 H 0.123 0.877 7 C -0.142 4.142 8 C -0.183 4.183 9 H 0.123 0.877 10 C 0.542 3.458 11 O -0.548 6.548 12 N -0.716 5.716 13 C 0.168 3.832 14 C -0.073 4.073 15 C -0.195 4.195 16 C -0.076 4.076 17 C -0.226 4.226 18 C 0.150 3.850 19 O -0.176 6.176 20 C -0.394 4.394 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.861 5.861 24 Si 0.941 3.059 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.170 4.170 29 C 0.055 3.945 30 N -0.298 5.298 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.176 0.824 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.404 0.596 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.271 0.729 44 H 0.118 0.882 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.369 -2.713 -6.970 25.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.160 5.160 3 C -0.081 4.081 4 C -0.217 4.217 5 C -0.059 4.059 6 H 0.141 0.859 7 C -0.180 4.180 8 C -0.205 4.205 9 H 0.141 0.859 10 C 0.328 3.672 11 O -0.426 6.426 12 N -0.366 5.366 13 C 0.045 3.955 14 C -0.074 4.074 15 C -0.215 4.215 16 C -0.095 4.095 17 C -0.245 4.245 18 C 0.096 3.904 19 O -0.079 6.079 20 C -0.470 4.470 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.199 1.199 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.190 4.190 29 C -0.131 4.131 30 N -0.119 5.119 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.193 0.807 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.239 0.761 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -25.118 -3.026 -7.670 26.437 hybrid contribution 1.218 0.168 1.248 1.752 sum -23.900 -2.858 -6.422 24.912 Atomic orbital electron populations 1.21862 0.74126 1.04572 1.03397 1.48451 1.06680 1.03842 1.57053 1.22294 0.90700 0.93471 1.01670 1.19292 0.93088 0.93120 1.16247 1.20190 0.87010 0.99329 0.99414 0.85909 1.23038 0.98110 1.01124 0.95706 1.22358 1.05179 0.99025 0.93898 0.85904 1.19644 0.78781 0.89280 0.79473 1.90677 1.64164 1.30732 1.57062 1.46064 1.44089 1.12216 1.34265 1.20156 0.94115 0.86570 0.94645 1.19267 0.93339 1.01131 0.93630 1.20477 0.99372 1.09600 0.92032 1.20746 0.93367 0.97462 0.97876 1.21241 0.96602 1.09453 0.97232 1.19325 0.86329 0.92009 0.92702 1.83982 1.15411 1.73928 1.34617 1.21322 0.89579 1.50533 0.85545 0.89040 1.25295 0.96185 0.96576 0.98396 1.70035 1.13707 1.44637 1.21129 0.85708 0.79011 0.78912 0.79782 1.19855 1.20213 1.19185 1.20085 0.92921 1.08094 0.97921 1.23788 0.95206 0.94484 0.99649 1.77372 1.01644 1.08306 1.24605 0.90727 0.89277 0.89392 0.80724 0.87691 0.87771 0.76104 0.90857 0.90994 0.87532 0.87300 0.85465 0.91945 0.86373 0.80006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.43 11.47 59.84 0.69 1.11 16 2 N -0.38 -3.20 4.01 -68.16 -0.27 -3.47 16 3 C 0.06 0.53 11.40 -17.22 -0.20 0.33 16 4 C -0.21 -1.89 5.76 -105.05 -0.61 -2.50 16 5 C -0.04 -0.37 5.76 -91.77 -0.53 -0.90 16 6 H 0.12 1.27 7.67 -51.92 -0.40 0.88 16 7 C -0.14 -1.24 9.73 -26.73 -0.26 -1.50 16 8 C -0.18 -1.83 5.89 -91.77 -0.54 -2.37 16 9 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 10 C 0.54 7.16 7.61 -10.99 -0.08 7.07 16 11 O -0.55 -9.03 16.26 5.56 0.09 -8.94 16 12 N -0.72 -9.26 5.55 -61.47 -0.34 -9.61 16 13 C 0.17 2.45 5.80 -5.19 -0.03 2.42 16 14 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 15 C -0.20 -3.17 9.70 -39.54 -0.38 -3.56 16 16 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 17 C -0.23 -4.69 9.17 -39.39 -0.36 -5.05 16 18 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 19 O -0.18 -4.89 9.76 0.05 0.00 -4.89 16 20 C -0.39 -10.74 9.49 30.89 0.29 -10.44 16 21 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 23 N -0.86 -24.80 13.67 55.48 0.76 -24.04 16 24 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 28 C -0.17 -3.42 9.65 -39.40 -0.38 -3.80 16 29 C 0.05 0.52 11.35 -17.37 -0.20 0.32 16 30 N -0.30 -3.19 12.57 30.62 0.39 -2.80 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.10 0.72 6.97 -51.93 -0.36 0.35 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.40 4.69 8.46 -40.82 -0.35 4.35 16 38 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 39 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 43 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 45 H 0.18 1.28 7.19 -52.49 -0.38 0.90 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -34.16 391.46 -8.23 -42.39 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.83 Total: 8.53 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -3.89 Total: -18.15 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.53 Total: -39.92 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.16 -8.23 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435130627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.701 kcal (2) G-P(sol) polarization free energy of solvation -34.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds