Wall clock time and date at job start Sat Apr 11 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34951 * 126.03350 * 2 1 4 4 C 1.35324 * 107.74399 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.03983 * 179.97438 * 4 3 2 6 6 H 1.09008 * 115.55047 * 334.28100 * 5 4 3 7 7 C 1.52997 * 117.50098 * 188.60969 * 5 4 3 8 8 C 1.53003 * 60.00248 * 252.50802 * 7 5 4 9 9 H 1.08998 * 117.49514 * 107.48338 * 8 7 5 10 10 C 1.50695 * 117.50320 * 252.51038 * 8 7 5 11 11 O 1.21282 * 120.00166 * 68.61731 * 10 8 7 12 12 N 1.34772 * 119.99960 * 248.62191 * 10 8 7 13 13 C 1.46500 * 120.00207 * 179.97438 * 12 10 8 14 14 C 1.50706 * 109.47476 * 179.97438 * 13 12 10 15 15 C 1.38321 * 119.96369 * 269.73241 * 14 13 12 16 16 C 1.38281 * 120.13449 * 179.76421 * 15 14 13 17 17 C 1.38123 * 120.06997 * 0.50731 * 16 15 14 18 18 C 1.38856 * 119.92700 * 359.74459 * 17 16 15 19 19 O 1.35757 * 120.06561 * 179.97438 * 18 17 16 20 20 C 1.34823 * 116.99952 * 354.48690 * 19 18 17 21 21 H 1.07997 * 120.00421 * 5.06487 * 20 19 18 22 22 C 1.38655 * 120.00049 * 185.05214 * 20 19 18 23 23 N 1.31559 * 119.99913 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00269 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46920 * 90.00486 * 24 22 20 26 26 H 1.48500 * 109.47387 * 210.00352 * 24 22 20 27 27 H 1.48496 * 109.47288 * 330.00729 * 24 22 20 28 28 C 1.38077 * 119.96402 * 90.00175 * 14 13 12 29 29 C 1.39870 * 107.91995 * 0.02562 * 4 3 2 30 30 N 1.30836 * 108.19976 * 0.02562 * 29 4 3 31 31 H 1.09002 * 109.47248 * 89.99830 * 1 2 3 32 32 H 1.09005 * 109.46914 * 209.99808 * 1 2 3 33 33 H 1.08998 * 109.47612 * 329.99624 * 1 2 3 34 34 H 1.08001 * 126.12965 * 359.71775 * 3 2 1 35 35 H 1.09001 * 117.49714 * 0.02562 * 7 5 4 36 36 H 1.09007 * 117.50144 * 144.99755 * 7 5 4 37 37 H 0.97003 * 120.00012 * 0.02562 * 12 10 8 38 38 H 1.08996 * 109.47592 * 300.00349 * 13 12 10 39 39 H 1.09005 * 109.46763 * 60.00374 * 13 12 10 40 40 H 1.07996 * 119.93607 * 359.97438 * 15 14 13 41 41 H 1.07998 * 119.96322 * 180.24824 * 16 15 14 42 42 H 1.07998 * 120.03385 * 179.71886 * 17 16 15 43 43 H 0.96996 * 120.00145 * 179.97438 * 23 22 20 44 44 H 1.08002 * 120.03448 * 359.95742 * 28 14 13 45 45 H 1.08001 * 125.89672 * 179.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7679 1.5454 0.0002 6 1 4.6333 2.5391 -0.4273 7 6 6.1243 0.8672 -0.2022 8 6 5.7371 1.4072 1.1761 9 1 5.4892 0.6805 1.9498 10 6 6.4326 2.6553 1.6550 11 8 6.2148 3.7174 1.1115 12 7 7.2968 2.5913 2.6872 13 6 7.9734 3.8045 3.1525 14 6 8.8780 3.4634 4.3085 15 6 8.3954 3.5204 5.6036 16 6 9.2210 3.2034 6.6666 17 6 10.5337 2.8389 6.4388 18 6 11.0224 2.7858 5.1402 19 8 12.3123 2.4284 4.9130 20 6 13.0971 2.2485 5.9944 21 1 12.6727 2.3087 6.9857 22 6 14.4491 1.9859 5.8339 23 7 14.9661 1.9128 4.6264 24 14 15.5363 1.7359 7.3322 25 1 15.5539 0.2963 7.6963 26 1 16.9174 2.1849 7.0220 27 1 15.0020 2.5276 8.4692 28 6 10.1892 3.0997 4.0742 29 6 3.5347 -0.7320 0.0003 30 7 2.2891 -1.1327 -0.0009 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.9280 2.1194 -0.0043 35 1 6.1312 -0.2146 -0.3355 36 1 6.8821 1.4145 -0.7628 37 1 7.4713 1.7417 3.1217 38 1 8.5651 4.2251 2.3395 39 1 7.2303 4.5335 3.4760 40 1 7.3708 3.8097 5.7847 41 1 8.8402 3.2449 7.6764 42 1 11.1792 2.5958 7.2698 43 1 15.9119 1.7295 4.5141 44 1 10.5664 3.0590 3.0630 45 1 4.4054 -1.3709 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435130627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:14 Heat of formation + Delta-G solvation = 44.447593 kcal Electronic energy + Delta-G solvation = -27133.901055 eV Core-core repulsion = 23118.916103 eV Total energy + Delta-G solvation = -4014.984952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.21612 -41.08792 -40.60343 -38.56685 -37.49131 -35.70380 -34.27912 -33.89634 -32.27422 -31.11314 -30.75418 -28.05004 -27.51694 -27.00567 -24.56939 -23.87445 -23.24900 -22.38539 -21.91414 -21.25597 -20.60635 -19.57927 -18.89992 -18.28095 -17.67069 -16.96170 -16.79192 -16.55245 -16.27390 -16.12640 -15.99012 -15.54268 -15.40175 -15.29027 -15.10515 -14.76773 -14.33612 -14.03533 -13.93519 -13.69670 -13.61742 -13.43525 -13.32667 -13.26808 -13.02406 -12.76006 -12.53710 -12.38166 -12.27280 -12.11261 -11.81205 -11.54415 -11.37804 -11.21128 -10.95789 -10.79494 -10.36918 -10.10062 -9.75547 -9.18893 -9.02768 -8.46373 -6.14961 0.38850 0.70812 0.92694 1.36387 1.45062 1.47087 1.53618 1.69655 1.76880 2.17948 2.29542 2.86277 3.08286 3.16261 3.40727 3.55383 3.78058 3.85998 3.96735 4.00583 4.09099 4.10308 4.26701 4.32149 4.36727 4.41723 4.44273 4.45783 4.53272 4.68510 4.71379 4.73738 4.78251 4.89578 5.01992 5.03751 5.12370 5.14493 5.26100 5.33764 5.41635 5.62690 5.68030 5.70911 5.72108 6.02140 6.12462 6.16857 6.56992 6.73142 6.98384 7.24309 7.78517 8.76600 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.001705 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.488573 B =16423.079411 C =16750.683787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.381 5.381 3 C 0.067 3.933 4 C -0.222 4.222 5 C -0.033 4.033 6 H 0.111 0.889 7 C -0.135 4.135 8 C -0.185 4.185 9 H 0.140 0.860 10 C 0.542 3.458 11 O -0.583 6.583 12 N -0.711 5.711 13 C 0.174 3.826 14 C -0.058 4.058 15 C -0.169 4.169 16 C -0.070 4.070 17 C -0.235 4.235 18 C 0.112 3.888 19 O -0.232 6.232 20 C -0.413 4.413 21 H 0.104 0.896 22 C -0.023 4.023 23 N -0.920 5.920 24 Si 1.018 2.982 25 H -0.263 1.263 26 H -0.273 1.273 27 H -0.252 1.252 28 C -0.181 4.181 29 C 0.050 3.950 30 N -0.336 5.336 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.201 0.799 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.412 0.588 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.272 0.728 44 H 0.108 0.892 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.425 -2.539 -5.366 28.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.163 5.163 3 C -0.081 4.081 4 C -0.234 4.234 5 C -0.053 4.053 6 H 0.129 0.871 7 C -0.173 4.173 8 C -0.206 4.206 9 H 0.157 0.843 10 C 0.330 3.670 11 O -0.464 6.464 12 N -0.362 5.362 13 C 0.050 3.950 14 C -0.059 4.059 15 C -0.188 4.188 16 C -0.088 4.088 17 C -0.254 4.254 18 C 0.062 3.938 19 O -0.139 6.139 20 C -0.489 4.489 21 H 0.121 0.879 22 C -0.220 4.220 23 N -0.558 5.558 24 Si 0.837 3.163 25 H -0.188 1.188 26 H -0.198 1.198 27 H -0.176 1.176 28 C -0.200 4.200 29 C -0.136 4.136 30 N -0.158 5.158 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.132 0.868 34 H 0.218 0.782 35 H 0.145 0.855 36 H 0.114 0.886 37 H 0.248 0.752 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.138 0.862 43 H 0.081 0.919 44 H 0.126 0.874 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -28.250 -2.865 -6.049 29.032 hybrid contribution 1.761 0.232 0.683 1.903 sum -26.488 -2.633 -5.366 27.154 Atomic orbital electron populations 1.22190 0.72059 1.05898 1.04604 1.48791 1.07944 1.03335 1.56194 1.22761 0.90556 0.94521 1.00225 1.19332 0.93356 0.93044 1.17654 1.20069 0.87488 0.98975 0.98734 0.87069 1.23138 0.97488 1.02299 0.94331 1.22334 1.05581 0.97925 0.94767 0.84261 1.20145 0.78283 0.89830 0.78753 1.90663 1.65335 1.32324 1.58046 1.45982 1.43801 1.12015 1.34404 1.20036 0.93947 0.87496 0.93484 1.19451 0.92031 0.99305 0.95117 1.20994 1.00846 1.05966 0.90992 1.21161 0.91679 0.95653 1.00276 1.21374 0.98292 1.09818 0.95928 1.19860 0.85541 0.93658 0.94766 1.83947 1.17479 1.77024 1.35413 1.21822 0.90290 1.50646 0.86172 0.87924 1.26576 0.97486 0.96125 1.01836 1.70184 1.14126 1.47639 1.23866 0.84593 0.76576 0.79334 0.75766 1.18793 1.19812 1.17593 1.20219 0.94175 1.08691 0.96958 1.24092 0.95468 0.94885 0.99108 1.77313 1.02452 1.09893 1.26096 0.89570 0.89231 0.86843 0.78218 0.85522 0.88598 0.75163 0.91923 0.89564 0.83468 0.83373 0.86170 0.91890 0.87422 0.78501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.47 127.77 1.47 2.05 16 2 N -0.38 -5.77 4.01 -369.56 -1.48 -7.25 16 3 C 0.07 0.95 11.40 83.54 0.95 1.90 16 4 C -0.22 -3.72 5.76 -20.14 -0.12 -3.83 16 5 C -0.03 -0.57 5.76 -11.54 -0.07 -0.64 16 6 H 0.11 2.22 7.67 -2.38 -0.02 2.20 16 7 C -0.14 -2.16 9.73 30.59 0.30 -1.86 16 8 C -0.18 -3.36 5.89 -11.54 -0.07 -3.43 16 9 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 10 C 0.54 13.51 7.61 87.66 0.67 14.17 16 11 O -0.58 -18.66 16.26 -3.03 -0.05 -18.71 16 12 N -0.71 -17.03 5.55 -466.79 -2.59 -19.62 16 13 C 0.17 4.71 5.80 85.63 0.50 5.21 16 14 C -0.06 -1.84 5.25 -19.88 -0.10 -1.94 16 15 C -0.17 -4.78 9.70 22.30 0.22 -4.56 16 16 C -0.07 -2.18 10.04 22.25 0.22 -1.96 16 17 C -0.23 -9.63 9.17 22.39 0.21 -9.43 16 18 C 0.11 5.36 6.65 22.58 0.15 5.51 16 19 O -0.23 -13.67 9.76 -22.75 -0.22 -13.89 16 20 C -0.41 -23.57 9.49 67.92 0.64 -22.93 16 21 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 22 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 23 N -0.92 -55.96 13.67 21.61 0.30 -55.66 16 24 Si 1.02 42.14 29.55 68.60 2.03 44.17 16 25 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 28 C -0.18 -7.36 9.65 22.39 0.22 -7.15 16 29 C 0.05 0.86 11.35 85.24 0.97 1.83 16 30 N -0.34 -6.80 12.57 -57.02 -0.72 -7.51 16 31 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.20 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.13 1.46 6.97 -2.39 -0.02 1.44 16 36 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.41 8.66 8.46 -92.71 -0.78 7.87 16 38 H 0.06 1.87 8.08 -2.39 -0.02 1.85 16 39 H 0.09 2.16 8.08 -2.38 -0.02 2.14 16 40 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 41 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 42 H 0.12 5.03 5.64 -2.91 -0.02 5.02 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 44 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 45 H 0.20 2.45 7.19 -2.91 -0.02 2.43 16 Total: -1.00 -79.19 391.46 4.12 -75.06 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: 0.25 Total: 31.26 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 6.61 Total: -27.84 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -4.49 Total: -90.05 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.27 Total: -32.60 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -79.19 4.12 -75.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435130627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.513 kcal (2) G-P(sol) polarization free energy of solvation -79.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds