Wall clock time and date at job start Sat Apr 11 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21282 * 119.99987 * 2 1 4 4 N 1.34776 * 120.00162 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00197 * 180.02562 * 4 2 1 6 6 H 1.09001 * 110.88605 * 37.42422 * 5 4 2 7 7 C 1.55151 * 111.04217 * 161.33230 * 5 4 2 8 8 C 1.54333 * 103.02326 * 153.39571 * 7 5 4 9 9 N 1.47020 * 107.26424 * 338.13949 * 8 7 5 10 10 C 1.34774 * 125.64566 * 178.85083 * 9 8 7 11 11 O 1.21663 * 120.00071 * 184.53807 * 10 9 8 12 12 C 1.46897 * 120.00247 * 4.54027 * 10 9 8 13 13 C 1.36123 * 125.43205 * 354.75178 * 12 10 9 14 14 C 1.41706 * 107.74511 * 179.97438 * 13 12 10 15 15 C 1.40011 * 133.34614 * 180.02562 * 14 13 12 16 16 C 1.36581 * 119.83341 * 180.23265 * 15 14 13 17 17 C 1.38854 * 120.59083 * 359.49865 * 16 15 14 18 18 C 1.37840 * 120.63959 * 0.50206 * 17 16 15 19 19 C 1.39084 * 119.81286 * 359.75963 * 18 17 16 20 20 N 1.37840 * 133.17093 * 180.02562 * 19 18 17 21 21 C 1.36894 * 125.61614 * 359.93547 * 20 19 18 22 22 H 1.08001 * 120.00223 * 133.31741 * 21 20 19 23 23 C 1.39017 * 119.99994 * 313.31966 * 21 20 19 24 24 N 1.31340 * 120.00010 * 172.24970 * 23 21 20 25 25 Si 1.86804 * 119.99821 * 352.24791 * 23 21 20 26 26 H 1.48495 * 109.47130 * 95.69828 * 25 23 21 27 27 H 1.48502 * 109.47073 * 215.69663 * 25 23 21 28 28 H 1.48497 * 109.47320 * 335.69359 * 25 23 21 29 29 C 1.47425 * 108.70622 * 358.58721 * 9 8 7 30 30 H 1.08988 * 109.47259 * 269.99883 * 1 2 3 31 31 H 1.08999 * 109.47100 * 30.00519 * 1 2 3 32 32 H 1.09004 * 109.46737 * 150.00004 * 1 2 3 33 33 H 0.97002 * 120.00179 * 0.02562 * 4 2 1 34 34 H 1.09007 * 110.71760 * 271.95783 * 7 5 4 35 35 H 1.09001 * 110.71639 * 35.04782 * 7 5 4 36 36 H 1.09002 * 109.98702 * 218.66661 * 8 7 5 37 37 H 1.08996 * 109.78240 * 97.50176 * 8 7 5 38 38 H 1.07996 * 126.12779 * 359.97438 * 13 12 10 39 39 H 1.08005 * 120.08855 * 359.95692 * 15 14 13 40 40 H 1.07993 * 119.70274 * 179.74559 * 16 15 14 41 41 H 1.08007 * 119.68245 * 180.28331 * 17 16 15 42 42 H 1.08001 * 120.09667 * 179.73004 * 18 17 16 43 43 H 0.97003 * 120.00474 * 180.02562 * 24 23 21 44 44 H 1.08995 * 110.36386 * 143.19157 * 29 9 8 45 45 H 1.08997 * 110.36745 * 265.41096 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0343 -0.3583 0.6199 7 6 4.2028 -2.5390 0.4651 8 6 5.5827 -2.6048 -0.2229 9 7 5.5439 -1.6832 -1.3677 10 6 6.5646 -1.4368 -2.2126 11 8 6.4465 -0.5909 -3.0790 12 6 7.8198 -2.1897 -2.0875 13 6 8.1089 -3.0838 -1.1027 14 6 9.4118 -3.5861 -1.3443 15 6 10.2227 -4.5139 -0.6794 16 6 11.4683 -4.7970 -1.1628 17 6 11.9358 -4.1804 -2.3157 18 6 11.1560 -3.2637 -2.9877 19 6 9.8861 -2.9551 -2.5116 20 7 8.8954 -2.1035 -2.9511 21 6 8.9656 -1.3036 -4.0598 22 1 8.1395 -1.2700 -4.7546 23 6 10.1003 -0.5346 -4.2913 24 7 10.2341 0.1135 -5.4258 25 14 11.4348 -0.4232 -2.9889 26 1 12.4985 -1.4165 -3.2838 27 1 12.0180 0.9425 -2.9933 28 1 10.8488 -0.7068 -1.6542 29 6 4.2017 -1.0780 -1.4422 30 1 -0.3633 0.0000 1.0275 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6960 -2.0073 0.0005 34 1 4.3083 -2.5654 1.5497 35 1 3.5624 -3.3513 0.1215 36 1 5.7778 -3.6195 -0.5703 37 1 6.3589 -2.2947 0.4767 38 1 7.4614 -3.3608 -0.2840 39 1 9.8659 -5.0011 0.2161 40 1 12.0935 -5.5099 -0.6460 41 1 12.9214 -4.4187 -2.6876 42 1 11.5301 -2.7861 -3.8812 43 1 11.0260 0.6498 -5.5876 44 1 4.2720 -0.0371 -1.7580 45 1 3.5696 -1.6404 -2.1293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436913091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:17 Heat of formation + Delta-G solvation = 15.565697 kcal Electronic energy + Delta-G solvation = -29622.398860 eV Core-core repulsion = 25606.161494 eV Total energy + Delta-G solvation = -4016.237365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.92569 -40.15717 -38.98498 -37.14024 -36.02872 -34.47028 -33.48429 -31.62763 -31.08550 -29.86953 -29.26400 -29.05873 -27.40948 -24.80948 -24.39534 -22.31055 -21.62291 -21.03910 -20.77131 -19.94733 -19.21905 -18.04609 -17.22499 -16.86966 -16.33222 -15.86086 -15.66155 -15.47633 -15.01745 -15.00477 -14.41396 -14.20590 -13.86497 -13.65459 -13.54261 -13.36476 -13.24698 -13.14058 -12.91172 -12.65554 -12.62156 -12.45468 -12.25292 -12.10930 -11.66313 -11.41345 -11.28079 -11.08583 -10.92746 -10.78227 -10.50751 -10.16773 -10.13490 -9.86273 -9.48047 -9.40899 -9.17491 -8.66318 -8.38073 -7.35272 -6.97335 -6.74148 -4.47227 1.55942 2.37882 2.46446 2.72920 2.81230 3.06926 3.19392 3.25630 3.29294 3.96725 4.08288 4.17573 4.32528 4.51640 4.58320 4.61286 4.76491 4.82209 4.89325 5.04844 5.07675 5.19369 5.27973 5.47869 5.49287 5.55908 5.63716 5.67675 5.80530 5.84211 5.85427 5.94012 6.06759 6.16320 6.18820 6.36064 6.48320 6.62917 6.66003 6.78622 7.18060 7.20467 7.28912 7.32663 7.58779 7.60940 7.82400 7.91142 7.96764 8.29247 8.72084 8.83720 9.08785 10.30447 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.003277 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.194778 B = 8543.303368 C = 9891.920145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.509 3.491 3 O -0.539 6.539 4 N -0.721 5.721 5 C 0.130 3.870 6 H 0.105 0.895 7 C -0.138 4.138 8 C 0.100 3.900 9 N -0.618 5.618 10 C 0.599 3.401 11 O -0.511 6.511 12 C -0.005 4.005 13 C -0.213 4.213 14 C -0.120 4.120 15 C -0.080 4.080 16 C -0.157 4.157 17 C -0.132 4.132 18 C -0.107 4.107 19 C 0.054 3.946 20 N -0.253 5.253 21 C -0.329 4.329 22 H 0.126 0.874 23 C 0.078 3.922 24 N -0.834 5.834 25 Si 0.877 3.123 26 H -0.249 1.249 27 H -0.284 1.284 28 H -0.253 1.253 29 C 0.104 3.896 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.402 0.598 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.146 0.854 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.285 0.715 44 H 0.084 0.916 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.343 -8.782 13.523 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.415 6.415 4 N -0.374 5.374 5 C 0.024 3.976 6 H 0.123 0.877 7 C -0.177 4.177 8 C -0.024 4.024 9 N -0.356 5.356 10 C 0.390 3.610 11 O -0.385 6.385 12 C -0.122 4.122 13 C -0.239 4.239 14 C -0.124 4.124 15 C -0.099 4.099 16 C -0.176 4.176 17 C -0.153 4.153 18 C -0.127 4.127 19 C -0.059 4.059 20 N 0.085 4.915 21 C -0.457 4.457 22 H 0.144 0.856 23 C -0.135 4.135 24 N -0.464 5.464 25 Si 0.702 3.298 26 H -0.174 1.174 27 H -0.211 1.211 28 H -0.176 1.176 29 C -0.021 4.021 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.237 0.763 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.163 0.837 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.807 -7.100 12.473 19.235 hybrid contribution 0.452 -0.219 0.382 0.631 sum -12.355 -7.319 12.855 19.273 Atomic orbital electron populations 1.21880 0.91489 1.05036 1.04730 1.20893 0.90678 0.83505 0.75347 1.90780 1.70724 1.31341 1.48685 1.45969 1.06481 1.08964 1.76009 1.22104 0.79747 0.98973 0.96737 0.87739 1.22982 0.96726 0.96394 1.01555 1.22367 0.96686 0.94989 0.88314 1.47923 1.11719 1.45546 1.30419 1.16866 0.81482 0.82221 0.80448 1.90872 1.81163 1.32586 1.33922 1.19625 0.92604 1.05365 0.94591 1.21053 0.96943 1.04240 1.01680 1.17974 0.95485 1.01395 0.97593 1.20133 0.93774 0.97186 0.98833 1.20359 0.96526 1.02635 0.98106 1.20558 0.99197 0.98669 0.96862 1.20292 0.92042 0.99377 1.00972 1.18429 0.93063 0.95988 0.98445 1.40199 1.08911 1.25619 1.16774 1.19516 1.06292 1.21287 0.98577 0.85631 1.25509 0.97751 0.93680 0.96513 1.69607 1.28519 1.26082 1.22160 0.86916 0.82020 0.77840 0.83071 1.17383 1.21129 1.17617 1.22436 0.83221 1.00238 0.96172 0.88857 0.88785 0.90121 0.76269 0.89231 0.89942 0.89963 0.90241 0.83653 0.87214 0.87275 0.86945 0.86099 0.90437 0.89769 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.30 36.01 0.37 -0.55 16 2 C 0.51 5.04 7.94 -10.98 -0.09 4.95 16 3 O -0.54 -8.30 16.84 5.56 0.09 -8.21 16 4 N -0.72 -5.63 5.23 -51.73 -0.27 -5.90 16 5 C 0.13 1.35 3.32 -65.78 -0.22 1.13 16 6 H 0.10 1.28 7.73 -51.93 -0.40 0.88 16 7 C -0.14 -1.05 6.58 -24.89 -0.16 -1.22 16 8 C 0.10 1.15 4.97 -3.06 -0.02 1.14 16 9 N -0.62 -10.20 3.33 -171.98 -0.57 -10.77 16 10 C 0.60 13.39 7.81 -12.76 -0.10 13.29 16 11 O -0.51 -13.62 15.47 5.22 0.08 -13.54 16 12 C -0.01 -0.12 6.75 -82.25 -0.56 -0.67 16 13 C -0.21 -4.19 9.30 -39.02 -0.36 -4.55 16 14 C -0.12 -2.54 6.16 -106.89 -0.66 -3.20 16 15 C -0.08 -1.44 10.06 -39.52 -0.40 -1.84 16 16 C -0.16 -2.70 9.97 -39.95 -0.40 -3.10 16 17 C -0.13 -2.51 10.02 -39.50 -0.40 -2.91 16 18 C -0.11 -2.42 6.65 -39.41 -0.26 -2.69 16 19 C 0.05 1.31 4.84 -83.83 -0.41 0.90 16 20 N -0.25 -6.63 2.42 -56.08 -0.14 -6.76 16 21 C -0.33 -9.48 9.01 -15.00 -0.14 -9.61 16 22 H 0.13 3.96 7.56 -52.49 -0.40 3.56 16 23 C 0.08 2.19 5.25 -17.47 -0.09 2.10 16 24 N -0.83 -23.92 13.95 55.50 0.77 -23.15 16 25 Si 0.88 21.74 23.62 -169.99 -4.02 17.73 16 26 H -0.25 -5.69 5.65 56.52 0.32 -5.37 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.25 -6.59 6.73 56.52 0.38 -6.21 16 29 C 0.10 1.48 6.62 -2.53 -0.02 1.46 16 30 H 0.09 0.36 8.14 -51.94 -0.42 -0.07 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.40 1.71 8.52 -40.82 -0.35 1.36 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.47 7.99 -51.93 -0.42 0.05 16 36 H 0.08 0.90 6.87 -51.93 -0.36 0.55 16 37 H 0.08 0.91 6.92 -51.93 -0.36 0.55 16 38 H 0.15 2.20 4.20 -52.49 -0.22 1.98 16 39 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 42 H 0.12 2.82 5.56 -52.49 -0.29 2.53 16 43 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.08 1.46 7.99 -51.93 -0.42 1.05 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -36.62 362.46 -8.30 -44.92 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.83 Total: 5.59 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -3.89 Total: -5.36 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.20 Total: -46.59 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.17 Total: -21.74 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.02 Total: 17.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.62 -8.30 -44.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436913091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.487 kcal (2) G-P(sol) polarization free energy of solvation -36.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds