Wall clock time and date at job start Sat Apr 11 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21282 * 119.99987 * 2 1 4 4 N 1.34776 * 120.00162 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00197 * 180.02562 * 4 2 1 6 6 H 1.09001 * 110.88605 * 37.42422 * 5 4 2 7 7 C 1.55151 * 111.04217 * 161.33230 * 5 4 2 8 8 C 1.54333 * 103.02326 * 153.39571 * 7 5 4 9 9 N 1.47020 * 107.26424 * 338.13949 * 8 7 5 10 10 C 1.34774 * 125.64566 * 178.85083 * 9 8 7 11 11 O 1.21663 * 120.00071 * 184.53807 * 10 9 8 12 12 C 1.46897 * 120.00247 * 4.54027 * 10 9 8 13 13 C 1.36123 * 125.43205 * 354.75178 * 12 10 9 14 14 C 1.41706 * 107.74511 * 179.97438 * 13 12 10 15 15 C 1.40011 * 133.34614 * 180.02562 * 14 13 12 16 16 C 1.36581 * 119.83341 * 180.23265 * 15 14 13 17 17 C 1.38854 * 120.59083 * 359.49865 * 16 15 14 18 18 C 1.37840 * 120.63959 * 0.50206 * 17 16 15 19 19 C 1.39084 * 119.81286 * 359.75963 * 18 17 16 20 20 N 1.37840 * 133.17093 * 180.02562 * 19 18 17 21 21 C 1.36894 * 125.61614 * 359.93547 * 20 19 18 22 22 H 1.08001 * 120.00223 * 133.31741 * 21 20 19 23 23 C 1.39017 * 119.99994 * 313.31966 * 21 20 19 24 24 N 1.31340 * 120.00010 * 172.24970 * 23 21 20 25 25 Si 1.86804 * 119.99821 * 352.24791 * 23 21 20 26 26 H 1.48495 * 109.47130 * 95.69828 * 25 23 21 27 27 H 1.48502 * 109.47073 * 215.69663 * 25 23 21 28 28 H 1.48497 * 109.47320 * 335.69359 * 25 23 21 29 29 C 1.47425 * 108.70622 * 358.58721 * 9 8 7 30 30 H 1.08988 * 109.47259 * 269.99883 * 1 2 3 31 31 H 1.08999 * 109.47100 * 30.00519 * 1 2 3 32 32 H 1.09004 * 109.46737 * 150.00004 * 1 2 3 33 33 H 0.97002 * 120.00179 * 0.02562 * 4 2 1 34 34 H 1.09007 * 110.71760 * 271.95783 * 7 5 4 35 35 H 1.09001 * 110.71639 * 35.04782 * 7 5 4 36 36 H 1.09002 * 109.98702 * 218.66661 * 8 7 5 37 37 H 1.08996 * 109.78240 * 97.50176 * 8 7 5 38 38 H 1.07996 * 126.12779 * 359.97438 * 13 12 10 39 39 H 1.08005 * 120.08855 * 359.95692 * 15 14 13 40 40 H 1.07993 * 119.70274 * 179.74559 * 16 15 14 41 41 H 1.08007 * 119.68245 * 180.28331 * 17 16 15 42 42 H 1.08001 * 120.09667 * 179.73004 * 18 17 16 43 43 H 0.97003 * 120.00474 * 180.02562 * 24 23 21 44 44 H 1.08995 * 110.36386 * 143.19157 * 29 9 8 45 45 H 1.08997 * 110.36745 * 265.41096 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0343 -0.3583 0.6199 7 6 4.2028 -2.5390 0.4651 8 6 5.5827 -2.6048 -0.2229 9 7 5.5439 -1.6832 -1.3677 10 6 6.5646 -1.4368 -2.2126 11 8 6.4465 -0.5909 -3.0790 12 6 7.8198 -2.1897 -2.0875 13 6 8.1089 -3.0838 -1.1027 14 6 9.4118 -3.5861 -1.3443 15 6 10.2227 -4.5139 -0.6794 16 6 11.4683 -4.7970 -1.1628 17 6 11.9358 -4.1804 -2.3157 18 6 11.1560 -3.2637 -2.9877 19 6 9.8861 -2.9551 -2.5116 20 7 8.8954 -2.1035 -2.9511 21 6 8.9656 -1.3036 -4.0598 22 1 8.1395 -1.2700 -4.7546 23 6 10.1003 -0.5346 -4.2913 24 7 10.2341 0.1135 -5.4258 25 14 11.4348 -0.4232 -2.9889 26 1 12.4985 -1.4165 -3.2838 27 1 12.0180 0.9425 -2.9933 28 1 10.8488 -0.7068 -1.6542 29 6 4.2017 -1.0780 -1.4422 30 1 -0.3633 0.0000 1.0275 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6960 -2.0073 0.0005 34 1 4.3083 -2.5654 1.5497 35 1 3.5624 -3.3513 0.1215 36 1 5.7778 -3.6195 -0.5703 37 1 6.3589 -2.2947 0.4767 38 1 7.4614 -3.3608 -0.2840 39 1 9.8659 -5.0011 0.2161 40 1 12.0935 -5.5099 -0.6460 41 1 12.9214 -4.4187 -2.6876 42 1 11.5301 -2.7861 -3.8812 43 1 11.0260 0.6498 -5.5876 44 1 4.2720 -0.0371 -1.7580 45 1 3.5696 -1.6404 -2.1293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436913091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:16 Heat of formation + Delta-G solvation = -13.243606 kcal Electronic energy + Delta-G solvation = -29623.648125 eV Core-core repulsion = 25606.161494 eV Total energy + Delta-G solvation = -4017.486630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.56955 -41.20856 -40.25525 -38.51925 -37.63307 -35.71799 -35.21166 -33.29480 -32.22276 -30.87702 -30.70989 -30.31187 -28.65079 -26.71094 -25.72132 -23.68798 -22.81774 -22.33989 -21.73135 -21.44844 -20.78145 -19.82072 -18.25249 -18.02916 -17.48874 -17.43493 -17.40848 -16.66904 -16.37424 -16.26454 -16.00872 -15.64938 -15.27147 -15.04702 -14.88587 -14.79116 -14.57018 -14.47122 -14.20726 -14.01091 -13.76885 -13.73023 -13.29090 -13.19762 -13.01468 -12.75997 -12.56729 -12.55680 -12.33083 -12.28656 -11.94270 -11.85270 -11.55624 -11.28456 -11.03833 -10.99374 -10.41790 -10.28036 -9.76861 -9.02318 -8.82402 -8.61911 -6.59418 -0.03867 0.90429 1.05315 1.09459 1.22955 1.33672 1.50617 1.66125 1.96365 2.25412 2.33997 2.68763 2.75271 3.14103 3.32787 3.52160 3.77811 3.94976 3.99067 4.03115 4.16802 4.25420 4.31719 4.38529 4.52325 4.53647 4.57695 4.66957 4.69664 4.71637 4.77430 4.80490 4.93427 5.00367 5.07081 5.08058 5.16754 5.25058 5.26957 5.40306 5.48315 5.67100 5.77257 5.81070 6.02343 6.09552 6.36384 6.41789 6.56971 6.77397 7.10187 7.19908 7.27543 8.29792 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.003277 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.194778 B = 8543.303368 C = 9891.920145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.501 3.499 3 O -0.605 6.605 4 N -0.702 5.702 5 C 0.140 3.860 6 H 0.082 0.918 7 C -0.113 4.113 8 C 0.081 3.919 9 N -0.608 5.608 10 C 0.586 3.414 11 O -0.580 6.580 12 C -0.040 4.040 13 C -0.167 4.167 14 C -0.142 4.142 15 C -0.061 4.061 16 C -0.155 4.155 17 C -0.104 4.104 18 C -0.163 4.163 19 C 0.039 3.961 20 N -0.297 5.297 21 C -0.343 4.343 22 H 0.068 0.932 23 C 0.034 3.966 24 N -0.888 5.888 25 Si 0.939 3.061 26 H -0.217 1.217 27 H -0.284 1.284 28 H -0.272 1.272 29 C 0.098 3.902 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.426 0.574 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.200 0.800 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.145 0.855 42 H 0.098 0.902 43 H 0.289 0.711 44 H 0.036 0.964 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.571 -13.981 19.145 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.290 3.710 3 O -0.486 6.486 4 N -0.355 5.355 5 C 0.033 3.967 6 H 0.100 0.900 7 C -0.151 4.151 8 C -0.040 4.040 9 N -0.343 5.343 10 C 0.377 3.623 11 O -0.460 6.460 12 C -0.154 4.154 13 C -0.194 4.194 14 C -0.147 4.147 15 C -0.079 4.079 16 C -0.174 4.174 17 C -0.124 4.124 18 C -0.183 4.183 19 C -0.074 4.074 20 N 0.037 4.963 21 C -0.471 4.471 22 H 0.086 0.914 23 C -0.173 4.173 24 N -0.521 5.521 25 Si 0.762 3.238 26 H -0.140 1.140 27 H -0.211 1.211 28 H -0.196 1.196 29 C -0.026 4.026 30 H 0.134 0.866 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.265 0.735 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.216 0.784 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.162 0.838 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.055 0.945 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.104 -12.400 18.148 25.589 hybrid contribution 0.406 1.092 -1.151 1.638 sum -12.698 -11.308 16.997 24.041 Atomic orbital electron populations 1.21898 0.87504 1.06209 1.06513 1.21832 0.92607 0.82859 0.73704 1.90764 1.72324 1.33779 1.51720 1.45804 1.05343 1.09710 1.74671 1.21841 0.81236 1.00596 0.93077 0.89951 1.22988 0.94065 0.94859 1.03159 1.22839 0.99985 0.94459 0.86693 1.47925 1.10879 1.45384 1.30112 1.17160 0.82699 0.81701 0.80710 1.90829 1.82579 1.35526 1.37107 1.20171 0.92253 1.06707 0.96241 1.21711 0.96742 1.00362 1.00553 1.18519 0.96462 1.02592 0.97100 1.20721 0.93095 0.94801 0.99317 1.20950 0.96846 1.02523 0.97069 1.21122 0.99593 0.95450 0.96239 1.20387 0.92961 1.02879 1.02065 1.19031 0.93156 0.95850 0.99351 1.40169 1.10906 1.27645 1.17554 1.18915 1.05049 1.23329 0.99835 0.91393 1.26191 0.99761 0.93072 0.98236 1.69696 1.29918 1.28463 1.24073 0.86029 0.80235 0.78239 0.79312 1.14009 1.21111 1.19643 1.22611 0.82738 0.97590 0.99702 0.86586 0.89671 0.86887 0.73512 0.85697 0.86513 0.88132 0.89379 0.78351 0.82084 0.82172 0.83761 0.88438 0.90062 0.94540 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 10.30 71.24 0.73 -0.61 16 2 C 0.50 9.48 7.94 87.66 0.70 10.18 16 3 O -0.60 -19.54 16.84 -3.04 -0.05 -19.59 16 4 N -0.70 -9.22 5.23 -435.96 -2.28 -11.50 16 5 C 0.14 2.66 3.32 46.38 0.15 2.82 16 6 H 0.08 2.01 7.73 -2.39 -0.02 1.99 16 7 C -0.11 -1.14 6.58 31.78 0.21 -0.93 16 8 C 0.08 1.57 4.97 86.73 0.43 2.00 16 9 N -0.61 -20.40 3.33 -816.24 -2.71 -23.12 16 10 C 0.59 28.17 7.81 86.51 0.68 28.84 16 11 O -0.58 -34.78 15.47 -4.23 -0.07 -34.85 16 12 C -0.04 -1.92 6.75 39.91 0.27 -1.65 16 13 C -0.17 -6.15 9.30 22.63 0.21 -5.94 16 14 C -0.14 -5.56 6.16 -21.34 -0.13 -5.69 16 15 C -0.06 -1.77 10.06 22.31 0.22 -1.55 16 16 C -0.16 -4.27 9.97 22.03 0.22 -4.05 16 17 C -0.10 -3.51 10.02 22.32 0.22 -3.28 16 18 C -0.16 -7.26 6.65 22.38 0.15 -7.11 16 19 C 0.04 1.88 4.84 39.06 0.19 2.07 16 20 N -0.30 -16.56 2.42 -331.33 -0.80 -17.36 16 21 C -0.34 -22.01 9.01 84.09 0.76 -21.25 16 22 H 0.07 4.95 7.56 -2.91 -0.02 4.93 16 23 C 0.03 2.08 5.25 84.95 0.45 2.53 16 24 N -0.89 -56.15 13.95 21.67 0.30 -55.85 16 25 Si 0.94 47.96 23.62 68.60 1.62 49.58 16 26 H -0.22 -9.78 5.65 99.48 0.56 -9.22 16 27 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.27 -14.46 6.73 99.48 0.67 -13.79 16 29 C 0.10 2.91 6.62 86.86 0.58 3.49 16 30 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 33 H 0.43 1.70 8.52 -92.71 -0.79 0.91 16 34 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.12 0.50 7.99 -2.39 -0.02 0.48 16 36 H 0.10 1.66 6.87 -2.39 -0.02 1.64 16 37 H 0.09 1.61 6.92 -2.39 -0.02 1.59 16 38 H 0.20 4.88 4.20 -2.91 -0.01 4.87 16 39 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 40 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 41 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 42 H 0.10 4.71 5.56 -2.91 -0.02 4.69 16 43 H 0.29 16.61 8.31 -92.71 -0.77 15.84 16 44 H 0.04 1.43 7.99 -2.39 -0.02 1.41 16 45 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -98.92 362.46 2.11 -96.80 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.07 Total: 16.02 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 6.03 Total: -0.13 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -5.50 Total: -107.83 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -0.12 Total: -54.44 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.62 Total: 49.58 kcal Total: -98.92 2.11 -96.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436913091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.560 kcal (2) G-P(sol) polarization free energy of solvation -98.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds