Wall clock time and date at job start Sat Apr 11 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99935 * 2 1 4 4 C 1.39709 * 120.00190 * 180.02562 * 2 1 3 5 5 C 1.38982 * 120.45682 * 185.14440 * 4 2 1 6 6 N 1.31790 * 120.80721 * 180.02562 * 5 4 2 7 7 C 1.31818 * 121.86874 * 359.68365 * 6 5 4 8 8 C 1.38900 * 120.82972 * 0.58051 * 7 6 5 9 9 N 1.39949 * 120.44943 * 179.72722 * 8 7 6 10 10 C 1.34771 * 119.99883 * 205.53849 * 9 8 7 11 11 O 1.21285 * 120.00379 * 5.75151 * 10 9 8 12 12 C 1.50708 * 119.99871 * 185.74678 * 10 9 8 13 13 C 1.50696 * 109.47235 * 179.97438 * 12 10 9 14 14 C 1.38325 * 119.96794 * 270.02685 * 13 12 10 15 15 C 1.38280 * 120.13617 * 179.97438 * 14 13 12 16 16 C 1.38122 * 120.07233 * 359.68178 * 15 14 13 17 17 C 1.38855 * 119.92798 * 0.59101 * 16 15 14 18 18 O 1.35755 * 120.06889 * 179.70366 * 17 16 15 19 19 C 1.34823 * 116.99930 * 354.45365 * 18 17 16 20 20 H 1.08004 * 120.00289 * 5.02139 * 19 18 17 21 21 C 1.38654 * 120.00020 * 185.01609 * 19 18 17 22 22 N 1.31559 * 120.00153 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00006 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47224 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46953 * 120.00291 * 23 21 19 26 26 H 1.48498 * 109.47143 * 240.00298 * 23 21 19 27 27 C 1.38086 * 119.96594 * 89.99925 * 13 12 10 28 28 C 1.39138 * 119.10249 * 359.45916 * 8 7 6 29 29 H 1.09002 * 109.47297 * 185.18423 * 1 2 3 30 30 H 1.08997 * 109.46951 * 305.18470 * 1 2 3 31 31 H 1.09005 * 109.47450 * 65.18177 * 1 2 3 32 32 H 1.09001 * 109.47159 * 270.00133 * 3 2 1 33 33 H 1.09000 * 109.47227 * 30.00093 * 3 2 1 34 34 H 1.09005 * 109.47202 * 150.00443 * 3 2 1 35 35 H 1.07997 * 119.59288 * 0.02562 * 5 4 2 36 36 H 1.08006 * 119.58411 * 180.29219 * 7 6 5 37 37 H 0.96998 * 120.00204 * 25.53870 * 9 8 7 38 38 H 1.09004 * 109.47003 * 60.00254 * 12 10 9 39 39 H 1.08996 * 109.46878 * 300.00023 * 12 10 9 40 40 H 1.07992 * 119.92656 * 359.97438 * 14 13 12 41 41 H 1.07998 * 119.95859 * 179.97438 * 15 14 13 42 42 H 1.07995 * 120.03465 * 180.31911 * 16 15 14 43 43 H 0.96993 * 119.99978 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.03309 * 0.04439 * 27 13 12 45 45 H 1.08001 * 120.85064 * 180.22831 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1636 -1.2099 -0.0005 5 6 3.5492 -1.2234 0.1069 6 7 4.2151 -2.3606 0.1066 7 6 3.6042 -3.5249 0.0117 8 6 2.2219 -3.5961 -0.1046 9 7 1.5821 -4.8362 -0.2106 10 6 0.3824 -4.9257 -0.8181 11 8 -0.0949 -3.9536 -1.3643 12 6 -0.3661 -6.2337 -0.8188 13 6 -1.6689 -6.0666 -1.5576 14 6 -2.8070 -5.6805 -0.8728 15 6 -4.0041 -5.5256 -1.5473 16 6 -4.0654 -5.7497 -2.9089 17 6 -2.9260 -6.1429 -3.5982 18 8 -2.9844 -6.3698 -4.9354 19 6 -4.2004 -6.3079 -5.5142 20 1 -5.0601 -6.0065 -4.9339 21 6 -4.3475 -6.6309 -6.8546 22 7 -3.3006 -6.9983 -7.5614 23 14 -6.0326 -6.5458 -7.6564 24 1 -7.0367 -6.1091 -6.6531 25 1 -5.9986 -5.5729 -8.7778 26 1 -6.4020 -7.8870 -8.1757 27 6 -1.7252 -6.2985 -2.9177 28 6 1.4816 -2.4180 -0.1088 29 1 -0.3634 -1.0235 0.0929 30 1 -0.3633 0.5921 0.8399 31 1 -0.3634 0.4314 -0.9328 32 1 2.3791 1.5834 -1.0277 33 1 1.6084 2.0284 0.5138 34 1 3.1500 1.1384 0.5138 35 1 4.0866 -0.2905 0.1916 36 1 4.1862 -4.4347 0.0199 37 1 2.0020 -5.6313 0.1532 38 1 -0.5678 -6.5375 0.2084 39 1 0.2363 -6.9967 -1.3118 40 1 -2.7604 -5.4997 0.1909 41 1 -4.8911 -5.2245 -1.0097 42 1 -4.9995 -5.6235 -3.4360 43 1 -3.4035 -7.2239 -8.4991 44 1 -0.8363 -6.6002 -3.4519 45 1 0.4052 -2.4406 -0.1941 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438291628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:21 Heat of formation + Delta-G solvation = -3.043678 kcal Electronic energy + Delta-G solvation = -28280.938459 eV Core-core repulsion = 24263.894130 eV Total energy + Delta-G solvation = -4017.044328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.95963 -40.90527 -40.26602 -38.28865 -37.78610 -36.01946 -34.35933 -33.65352 -32.22833 -31.11351 -30.76307 -29.33096 -28.27700 -27.24484 -26.15044 -24.59629 -23.31136 -22.93247 -22.24434 -21.45209 -19.60126 -19.12232 -18.70633 -18.28031 -17.76703 -17.18156 -16.80125 -16.58490 -16.49781 -16.14634 -16.09673 -15.87632 -15.54252 -15.25163 -15.09387 -14.93112 -14.55716 -14.39824 -14.27794 -14.01077 -13.60954 -13.48249 -13.27663 -13.03256 -12.98486 -12.87381 -12.58739 -12.47495 -12.39559 -12.23365 -12.09221 -12.02429 -11.44353 -11.25090 -11.20666 -10.82122 -10.40354 -9.64750 -9.43211 -8.98203 -8.47987 -8.37842 -6.16405 0.13568 0.43973 0.50244 0.75664 1.33186 1.41856 1.51873 1.57834 1.93237 2.14292 2.16767 2.83576 2.92871 3.16382 3.43044 3.68311 3.72904 3.89071 3.91305 3.98016 4.10430 4.16708 4.19595 4.31846 4.38768 4.43407 4.47019 4.52245 4.58242 4.64054 4.69933 4.74172 4.80324 4.86939 4.98225 5.06166 5.07183 5.12556 5.23238 5.30793 5.64575 5.67657 5.72514 5.74870 6.02362 6.14529 6.22685 6.31016 6.40788 6.96850 7.06158 7.11720 7.78806 8.75866 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014020 B = 0.002324 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.674194 B =12044.422972 C =12537.033343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.634 5.634 3 C 0.087 3.913 4 C 0.179 3.821 5 C -0.008 4.008 6 N -0.442 5.442 7 C 0.005 3.995 8 C 0.146 3.854 9 N -0.652 5.652 10 C 0.515 3.485 11 O -0.549 6.549 12 C -0.087 4.087 13 C -0.027 4.027 14 C -0.177 4.177 15 C -0.074 4.074 16 C -0.246 4.246 17 C 0.111 3.889 18 O -0.235 6.235 19 C -0.412 4.412 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.019 2.981 24 H -0.251 1.251 25 H -0.269 1.269 26 H -0.266 1.266 27 C -0.191 4.191 28 C -0.198 4.198 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.173 0.827 36 H 0.181 0.819 37 H 0.435 0.565 38 H 0.152 0.848 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.116 0.884 43 H 0.272 0.728 44 H 0.106 0.894 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.968 9.243 22.266 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.345 5.345 3 C -0.055 4.055 4 C 0.073 3.927 5 C -0.171 4.171 6 N -0.149 5.149 7 C -0.158 4.158 8 C 0.047 3.953 9 N -0.299 5.299 10 C 0.304 3.696 11 O -0.425 6.425 12 C -0.126 4.126 13 C -0.028 4.028 14 C -0.196 4.196 15 C -0.092 4.092 16 C -0.265 4.265 17 C 0.061 3.939 18 O -0.142 6.142 19 C -0.488 4.488 20 H 0.118 0.882 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.839 3.161 24 H -0.175 1.175 25 H -0.194 1.194 26 H -0.191 1.191 27 C -0.210 4.210 28 C -0.231 4.231 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.190 0.810 36 H 0.198 0.802 37 H 0.275 0.725 38 H 0.170 0.830 39 H 0.147 0.853 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.134 0.866 43 H 0.081 0.919 44 H 0.124 0.876 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.602 9.972 21.593 26.040 hybrid contribution -1.546 -0.335 -1.105 1.930 sum 9.055 9.637 20.487 24.385 Atomic orbital electron populations 1.21779 0.78894 1.02891 1.02075 1.46529 1.05664 1.03225 1.79060 1.21875 0.97829 0.83768 1.02040 1.18923 0.92866 0.86837 0.94073 1.22544 0.89302 0.97509 1.07715 1.67461 1.39782 0.98329 1.09307 1.22583 0.89313 0.97174 1.06696 1.18731 0.92813 0.86062 0.97651 1.43384 1.19940 1.09117 1.57416 1.21270 0.80757 0.91272 0.76295 1.90745 1.67937 1.40432 1.43340 1.20722 0.92574 0.94334 1.04982 1.19149 0.95434 0.96949 0.91260 1.20978 0.91976 1.05911 1.00694 1.21127 0.99055 0.96650 0.92347 1.21298 0.98356 1.10317 0.96547 1.19895 0.95453 0.94311 0.84279 1.83937 1.32895 1.80203 1.17208 1.21851 0.84616 1.47637 0.94742 0.88242 1.26608 1.04153 0.95656 0.95770 1.70194 1.32152 1.44732 1.09027 0.84522 0.74680 0.78724 0.78210 1.17478 1.19447 1.19082 1.20240 0.95439 1.10512 0.94845 1.21389 1.01630 0.90830 1.09202 0.91888 0.90049 0.92865 0.93066 0.89300 0.89898 0.81017 0.80201 0.72476 0.82998 0.85290 0.83307 0.83771 0.86639 0.91871 0.87577 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 10.61 127.77 1.36 2.96 16 2 N -0.63 -12.40 3.41 -746.92 -2.55 -14.95 16 3 C 0.09 1.06 10.35 127.77 1.32 2.38 16 4 C 0.18 4.25 6.55 38.28 0.25 4.50 16 5 C -0.01 -0.17 10.42 84.88 0.88 0.72 16 6 N -0.44 -10.41 10.35 -194.76 -2.01 -12.42 16 7 C 0.00 0.09 11.09 84.85 0.94 1.04 16 8 C 0.15 3.35 6.43 38.22 0.25 3.59 16 9 N -0.65 -11.74 5.37 -303.26 -1.63 -13.37 16 10 C 0.51 12.79 7.63 87.66 0.67 13.46 16 11 O -0.55 -19.59 13.31 -3.05 -0.04 -19.63 16 12 C -0.09 -1.77 5.83 29.10 0.17 -1.60 16 13 C -0.03 -0.89 4.37 -19.88 -0.09 -0.98 16 14 C -0.18 -5.44 9.70 22.30 0.22 -5.23 16 15 C -0.07 -2.59 10.04 22.25 0.22 -2.36 16 16 C -0.25 -11.13 9.17 22.39 0.21 -10.93 16 17 C 0.11 5.73 6.65 22.58 0.15 5.88 16 18 O -0.24 -14.71 9.76 -22.73 -0.22 -14.94 16 19 C -0.41 -24.79 9.49 67.92 0.64 -24.15 16 20 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 21 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 22 N -0.92 -58.04 13.67 21.61 0.30 -57.74 16 23 Si 1.02 43.94 29.55 68.60 2.03 45.97 16 24 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 27 C -0.19 -8.36 9.65 22.39 0.22 -8.15 16 28 C -0.20 -5.27 8.00 22.71 0.18 -5.09 16 29 H 0.06 1.40 5.44 -2.39 -0.01 1.38 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.73 8.07 -2.39 -0.02 0.71 16 34 H 0.08 0.79 6.04 -2.38 -0.01 0.77 16 35 H 0.17 2.83 6.05 -2.91 -0.02 2.81 16 36 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16 37 H 0.43 3.77 8.80 -92.71 -0.82 2.96 16 38 H 0.15 1.70 8.08 -2.38 -0.02 1.68 16 39 H 0.13 2.08 8.08 -2.39 -0.02 2.06 16 40 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 42 H 0.12 5.33 5.64 -2.91 -0.02 5.32 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 45 H 0.14 4.23 3.86 -2.91 -0.01 4.21 16 Total: -1.00 -86.88 378.44 4.16 -82.71 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.24 Total: 29.31 kcal Atomic # 6 Polarization: -33.00 SS G_CDS: 8.06 Total: -24.94 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -5.89 Total: -98.49 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.26 Total: -34.57 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -86.88 4.16 -82.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438291628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.669 kcal (2) G-P(sol) polarization free energy of solvation -86.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds