Wall clock time and date at job start Sat Apr 11 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47229 * 2 1 4 4 C 1.38851 * 120.00135 * 179.97438 * 3 2 1 5 5 C 1.39593 * 120.56609 * 353.59738 * 4 3 2 6 6 C 1.38196 * 118.42353 * 180.23595 * 5 4 3 7 7 C 1.38828 * 119.47692 * 359.52607 * 6 5 4 8 8 N 1.31339 * 121.12702 * 0.25875 * 7 6 5 9 9 C 1.32893 * 121.70840 * 359.97438 * 8 7 6 10 10 C 1.47720 * 119.80257 * 180.02562 * 9 8 7 11 11 O 1.21568 * 120.00058 * 174.22253 * 10 9 8 12 12 N 1.34781 * 119.99883 * 354.21433 * 10 9 8 13 13 C 1.46500 * 119.99807 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47114 * 180.02562 * 13 12 10 15 15 C 1.38323 * 119.96307 * 269.72452 * 14 13 12 16 16 C 1.38286 * 120.13586 * 179.76149 * 15 14 13 17 17 C 1.38114 * 120.06803 * 0.51674 * 16 15 14 18 18 C 1.38864 * 119.93271 * 359.73888 * 17 16 15 19 19 O 1.35745 * 120.06883 * 179.97438 * 18 17 16 20 20 C 1.34830 * 117.00226 * 5.92539 * 19 18 17 21 21 H 1.08000 * 119.99972 * 5.34414 * 20 19 18 22 22 C 1.38657 * 120.00044 * 185.34875 * 20 19 18 23 23 N 1.31561 * 120.00093 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00168 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47093 * 89.99648 * 24 22 20 26 26 H 1.48496 * 109.47203 * 210.00160 * 24 22 20 27 27 H 1.48505 * 109.46732 * 329.99680 * 24 22 20 28 28 C 1.38075 * 119.96761 * 89.99857 * 14 13 12 29 29 H 1.09001 * 109.47327 * 59.99806 * 1 2 3 30 30 H 1.09000 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47471 * 299.99996 * 1 2 3 32 32 H 1.09007 * 109.47255 * 240.00241 * 2 1 3 33 33 H 1.09001 * 109.47327 * 120.00194 * 2 1 3 34 34 H 0.97006 * 119.99805 * 0.02562 * 3 2 1 35 35 H 1.08004 * 120.78717 * 0.04002 * 5 4 3 36 36 H 1.08000 * 120.26315 * 179.80375 * 6 5 4 37 37 H 1.08010 * 119.43869 * 180.23207 * 7 6 5 38 38 H 0.96997 * 120.00237 * 0.02562 * 12 10 9 39 39 H 1.08995 * 109.47318 * 300.00607 * 13 12 10 40 40 H 1.09002 * 109.47092 * 60.00639 * 13 12 10 41 41 H 1.08000 * 119.93107 * 0.02562 * 15 14 13 42 42 H 1.07999 * 119.96527 * 180.25873 * 16 15 14 43 43 H 1.08000 * 120.03674 * 179.71942 * 17 16 15 44 44 H 0.96999 * 119.99962 * 179.97438 * 23 22 20 45 45 H 1.08002 * 120.02993 * 359.96072 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3834 1.6349 0.0005 5 6 4.2996 0.5903 0.1351 6 6 5.6478 0.8937 0.1349 7 6 6.0508 2.2145 -0.0078 8 7 5.1723 3.1821 -0.1376 9 6 3.8650 2.9431 -0.1389 10 6 2.9140 4.0635 -0.2883 11 8 1.7238 3.8404 -0.3955 12 7 3.3658 5.3332 -0.3056 13 6 2.4226 6.4443 -0.4543 14 6 3.1773 7.7487 -0.4437 15 6 3.3999 8.4084 0.7515 16 6 4.0962 9.6031 0.7660 17 6 4.5625 10.1465 -0.4150 18 6 4.3362 9.4894 -1.6172 19 8 4.7928 10.0213 -2.7796 20 6 5.5631 11.1240 -2.6873 21 1 5.8624 11.4940 -1.7178 22 6 5.9712 11.7829 -3.8370 23 7 5.6071 11.3319 -5.0181 24 14 7.0379 13.3110 -3.7091 25 1 8.4698 12.9178 -3.7247 26 1 6.7582 14.2077 -4.8593 27 1 6.7336 14.0223 -2.4415 28 6 3.6410 8.2869 -1.6277 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.3879 2.1185 0.0004 35 1 3.9626 -0.4304 0.2402 36 1 6.3823 0.1089 0.2403 37 1 7.1048 2.4505 -0.0117 38 1 4.3154 5.5113 -0.2203 39 1 1.8871 6.3425 -1.3982 40 1 1.7106 6.4295 0.3709 41 1 3.0327 7.9875 1.6758 42 1 4.2720 10.1137 1.7012 43 1 5.1024 11.0819 -0.4037 44 1 5.8922 11.7931 -5.8223 45 1 3.4636 7.7732 -2.5610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465084654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:25 Heat of formation + Delta-G solvation = 1.517323 kcal Electronic energy + Delta-G solvation = -27897.546995 eV Core-core repulsion = 23880.700446 eV Total energy + Delta-G solvation = -4016.846548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.87130 -39.29734 -38.72005 -37.01026 -36.65539 -34.48661 -32.53547 -32.29549 -32.03158 -30.70041 -29.15581 -28.57190 -26.19320 -25.25620 -24.63835 -23.43320 -22.10012 -21.68102 -20.85724 -20.63485 -18.44024 -17.69350 -17.55350 -17.01069 -16.60796 -15.91006 -15.64155 -15.34605 -15.23685 -15.01865 -14.66637 -14.57578 -14.38439 -13.88283 -13.78753 -13.62126 -13.42232 -13.27746 -12.86106 -12.67968 -12.50700 -12.37236 -12.21630 -12.14514 -12.10847 -11.65067 -11.35717 -10.90697 -10.80768 -10.77139 -10.66909 -10.45855 -10.26363 -9.83281 -9.60055 -9.40878 -9.00119 -8.86094 -8.20956 -7.77043 -7.29436 -6.46553 -4.05798 0.62567 1.27048 1.93488 2.30724 2.72737 3.11212 3.12769 3.15004 3.17704 3.37562 3.83050 3.94984 4.22139 4.52093 4.56215 4.61316 4.67641 4.70783 4.87264 4.96082 4.97423 5.08785 5.11916 5.27411 5.31402 5.37887 5.51856 5.56118 5.66735 5.70584 5.75726 5.86804 5.89591 5.92880 6.11856 6.28901 6.29470 6.45992 6.58720 6.85187 6.92558 7.03044 7.21650 7.30011 7.38318 7.50090 7.57694 7.74646 7.85333 7.97618 8.26923 8.98785 9.68136 10.71286 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.002096 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.528062 B =13357.620936 C =13877.916546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.719 5.719 4 C 0.230 3.770 5 C -0.173 4.173 6 C -0.095 4.095 7 C 0.033 3.967 8 N -0.412 5.412 9 C -0.015 4.015 10 C 0.582 3.418 11 O -0.558 6.558 12 N -0.696 5.696 13 C 0.166 3.834 14 C -0.073 4.073 15 C -0.193 4.193 16 C -0.076 4.076 17 C -0.224 4.224 18 C 0.150 3.850 19 O -0.176 6.176 20 C -0.392 4.392 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.861 5.861 24 Si 0.941 3.059 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.169 4.169 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.422 0.578 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.159 0.841 38 H 0.415 0.585 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.128 0.872 44 H 0.270 0.730 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 -21.703 12.014 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.357 5.357 4 C 0.116 3.884 5 C -0.203 4.203 6 C -0.116 4.116 7 C -0.132 4.132 8 N -0.122 5.122 9 C -0.158 4.158 10 C 0.369 3.631 11 O -0.437 6.437 12 N -0.345 5.345 13 C 0.043 3.957 14 C -0.074 4.074 15 C -0.213 4.213 16 C -0.095 4.095 17 C -0.244 4.244 18 C 0.096 3.904 19 O -0.079 6.079 20 C -0.468 4.468 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.189 4.189 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.272 0.728 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.176 0.824 38 H 0.252 0.748 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.080 0.920 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.429 -21.077 11.333 24.338 hybrid contribution 0.653 0.241 0.212 0.728 sum -3.776 -20.836 11.545 24.118 Atomic orbital electron populations 1.21946 0.94157 1.02908 1.03162 1.21416 0.95252 0.83733 1.01082 1.45726 1.03737 1.09190 1.77084 1.18704 0.85857 0.93007 0.90826 1.21124 0.92781 0.98570 1.07874 1.22130 0.95741 0.98211 0.95542 1.22476 0.99192 0.88372 1.03122 1.67367 1.00914 1.36950 1.06974 1.20439 0.91004 0.91284 1.13067 1.17721 0.86678 0.82594 0.76113 1.90396 1.16423 1.83551 1.53367 1.45918 1.12397 1.04646 1.71527 1.20229 0.90677 0.82346 1.02422 1.19230 0.99735 0.95165 0.93272 1.20471 1.06475 0.97980 0.96374 1.20738 0.96603 0.95153 0.96977 1.21243 1.07944 1.02857 0.92349 1.19327 0.91987 0.92162 0.86874 1.83996 1.58364 1.40490 1.25099 1.21312 1.27211 1.03567 0.94715 0.89079 1.25301 0.98009 0.99013 0.94215 1.70041 1.42782 1.39258 0.97497 0.85708 0.79472 0.79833 0.78394 1.19844 1.20260 1.19198 1.20076 1.04961 0.96139 0.97697 0.91633 0.90851 0.91836 0.92054 0.92178 0.72833 0.84568 0.84507 0.82379 0.74782 0.90633 0.90734 0.87526 0.87282 0.85458 0.91978 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 10.03 37.16 0.37 -0.64 16 2 C 0.11 0.79 5.72 -4.05 -0.02 0.77 16 3 N -0.72 -7.75 5.54 -58.35 -0.32 -8.07 16 4 C 0.23 2.69 6.66 -83.48 -0.56 2.13 16 5 C -0.17 -1.55 9.41 -39.09 -0.37 -1.92 16 6 C -0.10 -0.77 10.10 -39.38 -0.40 -1.17 16 7 C 0.03 0.33 11.17 -17.54 -0.20 0.13 16 8 N -0.41 -5.42 9.55 -9.67 -0.09 -5.52 16 9 C -0.02 -0.21 6.76 -82.84 -0.56 -0.77 16 10 C 0.58 8.82 7.79 -12.38 -0.10 8.72 16 11 O -0.56 -9.01 13.64 5.31 0.07 -8.93 16 12 N -0.70 -10.41 5.54 -62.47 -0.35 -10.76 16 13 C 0.17 2.54 5.80 -5.19 -0.03 2.51 16 14 C -0.07 -1.29 5.25 -104.65 -0.55 -1.84 16 15 C -0.19 -3.27 9.70 -39.53 -0.38 -3.66 16 16 C -0.08 -1.37 10.04 -39.61 -0.40 -1.77 16 17 C -0.22 -4.79 9.13 -39.40 -0.36 -5.15 16 18 C 0.15 3.58 6.65 -39.11 -0.26 3.32 16 19 O -0.18 -4.99 9.76 0.06 0.00 -4.99 16 20 C -0.39 -10.86 9.44 30.89 0.29 -10.57 16 21 H 0.09 2.33 5.30 -52.49 -0.28 2.05 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 23 N -0.86 -25.21 13.67 55.48 0.76 -24.45 16 24 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 28 C -0.17 -3.52 9.64 -39.40 -0.38 -3.90 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.36 7.74 -51.93 -0.40 -0.04 16 34 H 0.42 5.27 5.07 -40.86 -0.21 5.06 16 35 H 0.14 0.87 6.86 -52.48 -0.36 0.51 16 36 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.16 1.21 8.06 -52.48 -0.42 0.78 16 38 H 0.42 6.23 7.80 -40.82 -0.32 5.91 16 39 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 40 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.13 2.72 5.72 -52.49 -0.30 2.42 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -32.07 383.16 -8.81 -40.89 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -5.65 Total: 13.48 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -3.99 Total: -12.81 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.00 Total: -48.80 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.07 Total: -13.92 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.07 -8.81 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465084654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.406 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds