Wall clock time and date at job start Sat Apr 11 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47229 * 2 1 4 4 C 1.38851 * 120.00135 * 179.97438 * 3 2 1 5 5 C 1.39593 * 120.56609 * 353.59738 * 4 3 2 6 6 C 1.38196 * 118.42353 * 180.23595 * 5 4 3 7 7 C 1.38828 * 119.47692 * 359.52607 * 6 5 4 8 8 N 1.31339 * 121.12702 * 0.25875 * 7 6 5 9 9 C 1.32893 * 121.70840 * 359.97438 * 8 7 6 10 10 C 1.47720 * 119.80257 * 180.02562 * 9 8 7 11 11 O 1.21568 * 120.00058 * 174.22253 * 10 9 8 12 12 N 1.34781 * 119.99883 * 354.21433 * 10 9 8 13 13 C 1.46500 * 119.99807 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47114 * 180.02562 * 13 12 10 15 15 C 1.38323 * 119.96307 * 269.72452 * 14 13 12 16 16 C 1.38286 * 120.13586 * 179.76149 * 15 14 13 17 17 C 1.38114 * 120.06803 * 0.51674 * 16 15 14 18 18 C 1.38864 * 119.93271 * 359.73888 * 17 16 15 19 19 O 1.35745 * 120.06883 * 179.97438 * 18 17 16 20 20 C 1.34830 * 117.00226 * 5.92539 * 19 18 17 21 21 H 1.08000 * 119.99972 * 5.34414 * 20 19 18 22 22 C 1.38657 * 120.00044 * 185.34875 * 20 19 18 23 23 N 1.31561 * 120.00093 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00168 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47093 * 89.99648 * 24 22 20 26 26 H 1.48496 * 109.47203 * 210.00160 * 24 22 20 27 27 H 1.48505 * 109.46732 * 329.99680 * 24 22 20 28 28 C 1.38075 * 119.96761 * 89.99857 * 14 13 12 29 29 H 1.09001 * 109.47327 * 59.99806 * 1 2 3 30 30 H 1.09000 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47471 * 299.99996 * 1 2 3 32 32 H 1.09007 * 109.47255 * 240.00241 * 2 1 3 33 33 H 1.09001 * 109.47327 * 120.00194 * 2 1 3 34 34 H 0.97006 * 119.99805 * 0.02562 * 3 2 1 35 35 H 1.08004 * 120.78717 * 0.04002 * 5 4 3 36 36 H 1.08000 * 120.26315 * 179.80375 * 6 5 4 37 37 H 1.08010 * 119.43869 * 180.23207 * 7 6 5 38 38 H 0.96997 * 120.00237 * 0.02562 * 12 10 9 39 39 H 1.08995 * 109.47318 * 300.00607 * 13 12 10 40 40 H 1.09002 * 109.47092 * 60.00639 * 13 12 10 41 41 H 1.08000 * 119.93107 * 0.02562 * 15 14 13 42 42 H 1.07999 * 119.96527 * 180.25873 * 16 15 14 43 43 H 1.08000 * 120.03674 * 179.71942 * 17 16 15 44 44 H 0.96999 * 119.99962 * 179.97438 * 23 22 20 45 45 H 1.08002 * 120.02993 * 359.96072 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3834 1.6349 0.0005 5 6 4.2996 0.5903 0.1351 6 6 5.6478 0.8937 0.1349 7 6 6.0508 2.2145 -0.0078 8 7 5.1723 3.1821 -0.1376 9 6 3.8650 2.9431 -0.1389 10 6 2.9140 4.0635 -0.2883 11 8 1.7238 3.8404 -0.3955 12 7 3.3658 5.3332 -0.3056 13 6 2.4226 6.4443 -0.4543 14 6 3.1773 7.7487 -0.4437 15 6 3.3999 8.4084 0.7515 16 6 4.0962 9.6031 0.7660 17 6 4.5625 10.1465 -0.4150 18 6 4.3362 9.4894 -1.6172 19 8 4.7928 10.0213 -2.7796 20 6 5.5631 11.1240 -2.6873 21 1 5.8624 11.4940 -1.7178 22 6 5.9712 11.7829 -3.8370 23 7 5.6071 11.3319 -5.0181 24 14 7.0379 13.3110 -3.7091 25 1 8.4698 12.9178 -3.7247 26 1 6.7582 14.2077 -4.8593 27 1 6.7336 14.0223 -2.4415 28 6 3.6410 8.2869 -1.6277 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.3879 2.1185 0.0004 35 1 3.9626 -0.4304 0.2402 36 1 6.3823 0.1089 0.2403 37 1 7.1048 2.4505 -0.0117 38 1 4.3154 5.5113 -0.2203 39 1 1.8871 6.3425 -1.3982 40 1 1.7106 6.4295 0.3709 41 1 3.0327 7.9875 1.6758 42 1 4.2720 10.1137 1.7012 43 1 5.1024 11.0819 -0.4037 44 1 5.8922 11.7931 -5.8223 45 1 3.4636 7.7732 -2.5610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465084654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:24 Heat of formation + Delta-G solvation = -20.278891 kcal Electronic energy + Delta-G solvation = -27898.492149 eV Core-core repulsion = 23880.700446 eV Total energy + Delta-G solvation = -4017.791703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.78107 -40.87136 -39.91385 -38.47930 -37.60817 -35.76514 -34.29378 -33.32378 -32.75612 -32.07252 -30.78953 -29.38258 -27.66005 -26.99514 -25.50650 -24.25599 -23.27654 -22.83125 -22.45297 -21.68062 -19.81495 -19.16560 -18.62983 -18.40574 -17.54598 -16.95340 -16.81309 -16.68466 -16.31468 -16.23240 -16.03305 -15.82585 -15.52050 -15.36369 -15.07374 -14.79802 -14.54902 -14.32316 -14.16858 -13.94591 -13.68262 -13.49349 -13.33924 -13.07065 -13.02514 -12.83406 -12.67129 -12.52972 -12.39315 -12.29304 -12.11539 -11.46400 -11.33215 -11.24479 -10.81203 -10.57726 -10.45651 -10.18764 -9.77356 -9.04678 -8.56584 -8.47317 -6.15926 -0.19434 0.36599 0.52005 0.69197 1.35422 1.44727 1.53106 1.71575 2.15412 2.19085 2.46719 2.84194 2.98068 3.15666 3.35032 3.36495 3.77541 3.86090 3.92254 4.05593 4.07392 4.18768 4.22636 4.29044 4.35200 4.39142 4.50101 4.51318 4.59189 4.67562 4.71302 4.87927 4.95499 4.99753 5.01363 5.10746 5.20308 5.21433 5.23623 5.29252 5.60280 5.62073 5.68954 5.69921 6.00827 6.14848 6.21201 6.38783 6.64344 6.97157 6.97302 7.18671 7.77535 8.75940 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.002096 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.528062 B =13357.620936 C =13877.916546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.105 3.895 3 N -0.727 5.727 4 C 0.220 3.780 5 C -0.170 4.170 6 C -0.078 4.078 7 C 0.023 3.977 8 N -0.441 5.441 9 C -0.056 4.056 10 C 0.577 3.423 11 O -0.576 6.576 12 N -0.698 5.698 13 C 0.172 3.828 14 C -0.061 4.061 15 C -0.169 4.169 16 C -0.069 4.069 17 C -0.232 4.232 18 C 0.113 3.887 19 O -0.232 6.232 20 C -0.412 4.412 21 H 0.104 0.896 22 C -0.025 4.025 23 N -0.921 5.921 24 Si 1.020 2.980 25 H -0.263 1.263 26 H -0.273 1.273 27 H -0.251 1.251 28 C -0.182 4.182 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.412 0.588 35 H 0.167 0.833 36 H 0.179 0.821 37 H 0.180 0.820 38 H 0.414 0.586 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.122 0.878 44 H 0.272 0.728 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.032 -23.832 15.297 28.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.018 4.018 3 N -0.363 5.363 4 C 0.105 3.895 5 C -0.200 4.200 6 C -0.098 4.098 7 C -0.143 4.143 8 N -0.152 5.152 9 C -0.196 4.196 10 C 0.366 3.634 11 O -0.457 6.457 12 N -0.347 5.347 13 C 0.050 3.950 14 C -0.061 4.061 15 C -0.188 4.188 16 C -0.087 4.087 17 C -0.252 4.252 18 C 0.062 3.938 19 O -0.139 6.139 20 C -0.488 4.488 21 H 0.121 0.879 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.839 3.161 25 H -0.188 1.188 26 H -0.198 1.198 27 H -0.174 1.174 28 C -0.201 4.201 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.259 0.741 35 H 0.184 0.816 36 H 0.197 0.803 37 H 0.197 0.803 38 H 0.251 0.749 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.165 0.835 42 H 0.168 0.832 43 H 0.140 0.860 44 H 0.081 0.919 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.831 -23.252 14.672 27.760 hybrid contribution 0.344 0.567 -0.559 0.867 sum -3.487 -22.685 14.114 26.944 Atomic orbital electron populations 1.21946 0.93646 1.04099 1.02207 1.21654 0.95758 0.82107 1.02322 1.45917 1.03415 1.10295 1.76628 1.18954 0.86682 0.93074 0.90768 1.21535 0.92707 0.99167 1.06596 1.22573 0.96266 0.98289 0.92702 1.23033 0.99800 0.89072 1.02423 1.67285 1.01109 1.38638 1.08133 1.20245 0.91154 0.91530 1.16694 1.18088 0.86929 0.82894 0.75486 1.90381 1.17213 1.83902 1.54212 1.45843 1.12112 1.04674 1.72072 1.20142 0.90629 0.81429 1.02835 1.19437 0.98484 0.95778 0.92413 1.20992 1.03674 0.96760 0.97335 1.21166 0.95108 0.95244 0.97162 1.21378 1.08223 1.02825 0.92750 1.19845 0.93521 0.93416 0.86993 1.83958 1.60610 1.41795 1.27499 1.21822 1.27683 1.03692 0.95593 0.87915 1.26626 0.99484 1.02591 0.93522 1.70195 1.45611 1.41657 0.98495 0.84572 0.77393 0.75135 0.79022 1.18801 1.19751 1.17443 1.20202 1.05494 0.95682 0.98769 0.92993 0.88542 0.92387 0.91148 0.90294 0.74107 0.81582 0.80332 0.80315 0.74915 0.91516 0.88878 0.83500 0.83175 0.85992 0.91870 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 10.03 71.98 0.72 -1.04 16 2 C 0.10 1.30 5.72 86.38 0.49 1.79 16 3 N -0.73 -15.03 5.54 -338.51 -1.87 -16.91 16 4 C 0.22 4.88 6.66 38.81 0.26 5.14 16 5 C -0.17 -2.52 9.41 22.59 0.21 -2.31 16 6 C -0.08 -0.98 10.10 22.40 0.23 -0.75 16 7 C 0.02 0.41 11.17 84.91 0.95 1.36 16 8 N -0.44 -11.42 9.55 -184.51 -1.76 -13.18 16 9 C -0.06 -1.53 6.76 41.94 0.28 -1.25 16 10 C 0.58 17.76 7.79 86.75 0.68 18.44 16 11 O -0.58 -18.96 13.64 -3.93 -0.05 -19.01 16 12 N -0.70 -20.98 5.54 -469.82 -2.60 -23.58 16 13 C 0.17 5.20 5.80 85.63 0.50 5.69 16 14 C -0.06 -2.08 5.25 -19.88 -0.10 -2.19 16 15 C -0.17 -5.18 9.70 22.30 0.22 -4.96 16 16 C -0.07 -2.28 10.04 22.25 0.22 -2.06 16 17 C -0.23 -9.94 9.13 22.39 0.20 -9.73 16 18 C 0.11 5.62 6.65 22.58 0.15 5.77 16 19 O -0.23 -14.07 9.76 -22.68 -0.22 -14.30 16 20 C -0.41 -24.01 9.44 67.92 0.64 -23.37 16 21 H 0.10 5.45 5.30 -2.91 -0.02 5.43 16 22 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 23 N -0.92 -57.17 13.67 21.61 0.30 -56.88 16 24 Si 1.02 42.96 29.55 68.60 2.03 44.98 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 28 C -0.18 -7.91 9.64 22.39 0.22 -7.69 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.08 0.69 7.74 -2.39 -0.02 0.67 16 34 H 0.41 10.35 5.07 -93.43 -0.47 9.87 16 35 H 0.17 1.39 6.86 -2.91 -0.02 1.37 16 36 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.41 12.55 7.80 -92.71 -0.72 11.82 16 39 H 0.07 2.13 8.08 -2.39 -0.02 2.12 16 40 H 0.09 2.49 8.08 -2.39 -0.02 2.47 16 41 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 43 H 0.12 5.28 5.72 -2.91 -0.02 5.26 16 44 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 45 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -76.89 383.16 1.99 -74.90 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.15 Total: 42.08 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 6.33 Total: -18.11 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -5.94 Total: -110.54 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.27 Total: -33.31 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -76.89 1.99 -74.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465084654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.621 kcal (2) G-P(sol) polarization free energy of solvation -76.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds