Wall clock time and date at job start Sat Apr 11 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00014 * 2 1 4 4 C 1.53002 * 109.46685 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46851 * 179.97438 * 4 3 2 6 6 N 1.29944 * 126.28735 * 89.97778 * 5 4 3 7 7 O 1.21308 * 110.25054 * 180.02562 * 6 5 4 8 8 C 1.33645 * 109.80970 * 359.97438 * 7 6 5 9 9 C 1.50697 * 126.54637 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47293 * 270.02369 * 9 8 7 11 11 C 1.46499 * 120.00136 * 270.00491 * 10 9 8 12 12 C 1.34784 * 119.99893 * 90.00297 * 10 9 8 13 13 O 1.21588 * 119.99858 * 359.97438 * 12 10 9 14 14 N 1.34773 * 119.99935 * 179.72905 * 12 10 9 15 15 C 1.46496 * 119.99973 * 180.02562 * 14 12 10 16 16 C 1.50703 * 109.47316 * 179.97438 * 15 14 12 17 17 O 1.21287 * 119.99956 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99967 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00021 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99918 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00116 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99720 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99945 * 0.02562 * 21 19 18 24 24 H 1.48508 * 109.46976 * 90.00241 * 23 21 19 25 25 H 1.48495 * 109.47073 * 209.99765 * 23 21 19 26 26 H 1.48495 * 109.47491 * 330.00352 * 23 21 19 27 27 N 1.31130 * 106.89791 * 0.23207 * 8 7 6 28 28 H 1.08996 * 109.47252 * 300.00754 * 1 2 3 29 29 H 1.09004 * 109.47070 * 60.00286 * 1 2 3 30 30 H 1.08993 * 109.47608 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46861 * 59.99926 * 3 2 1 32 32 H 1.08994 * 109.47085 * 299.99895 * 3 2 1 33 33 H 1.09005 * 109.47240 * 60.00311 * 4 3 2 34 34 H 1.08994 * 109.47516 * 299.99928 * 4 3 2 35 35 H 1.08997 * 109.46951 * 150.02684 * 9 8 7 36 36 H 1.08998 * 109.47681 * 30.02738 * 9 8 7 37 37 H 1.08999 * 109.47256 * 269.99572 * 11 10 9 38 38 H 1.08998 * 109.47416 * 29.99674 * 11 10 9 39 39 H 1.09008 * 109.47058 * 150.00274 * 11 10 9 40 40 H 0.97004 * 120.00018 * 359.97438 * 14 12 10 41 41 H 1.09007 * 109.47081 * 299.99672 * 15 14 12 42 42 H 1.08997 * 109.47795 * 59.99548 * 15 14 12 43 43 H 0.96997 * 120.00370 * 0.02562 * 18 16 15 44 44 H 0.97005 * 119.99894 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1485 2.5612 0.0000 6 7 4.4605 3.2646 1.0471 7 8 4.9346 4.3296 0.7115 8 6 4.9715 4.4088 -0.6221 9 6 5.4865 5.5661 -1.4384 10 7 4.3913 6.5021 -1.7041 11 6 3.5653 6.3417 -2.9033 12 6 4.1436 7.5108 -0.8451 13 8 4.8288 7.6436 0.1505 14 7 3.1395 8.3751 -1.0923 15 6 2.8706 9.4718 -0.1590 16 6 1.7070 10.2864 -0.6628 17 8 1.1568 9.9811 -1.6998 18 7 1.2778 11.3540 0.0388 19 6 0.2196 12.0953 -0.4197 20 1 -0.2703 11.8235 -1.3431 21 6 -0.2226 13.1963 0.3034 22 7 -1.2372 13.9066 -0.1360 23 14 0.6252 13.6669 1.9000 24 1 1.7329 14.6133 1.6120 25 1 -0.3549 14.3139 2.8088 26 1 1.1717 12.4479 2.5483 27 7 4.4687 3.2895 -1.0845 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8575 0.6435 -0.8892 34 1 3.8568 0.6438 0.8908 35 1 5.8850 5.1957 -2.3829 36 1 6.2755 6.0773 -0.8868 37 1 4.0046 6.9068 -3.7253 38 1 3.5169 5.2866 -3.1728 39 1 2.5597 6.7124 -2.7041 40 1 2.5953 8.2715 -1.8886 41 1 2.6304 9.0630 0.8225 42 1 3.7524 10.1078 -0.0818 43 1 1.7180 11.5984 0.8679 44 1 -1.5462 14.6750 0.3690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001478603037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:32 Heat of formation + Delta-G solvation = -23.297676 kcal Electronic energy + Delta-G solvation = -29051.543838 eV Core-core repulsion = 24622.771967 eV Total energy + Delta-G solvation = -4428.771871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.85387 -40.35744 -38.52714 -38.45920 -36.52241 -35.99581 -34.71204 -33.98035 -33.43441 -31.84512 -31.36942 -29.05210 -27.77744 -27.07318 -26.17849 -24.69304 -24.27344 -23.40415 -21.60174 -20.08509 -19.75611 -18.97364 -18.40965 -17.98316 -17.78904 -16.83811 -16.65408 -16.49316 -16.19464 -15.65053 -15.50820 -15.16112 -15.03979 -14.51904 -14.29795 -14.19635 -13.99902 -13.71046 -13.31856 -13.19199 -13.03997 -12.84408 -12.77152 -12.51567 -12.22503 -12.16811 -12.14469 -11.93508 -11.84727 -11.58383 -11.33750 -11.26541 -10.67088 -10.44359 -10.16715 -10.13309 -10.09287 -9.73738 -9.30248 -8.86283 -8.82482 -8.34473 -6.44366 -3.97181 0.78514 1.76454 2.41901 2.58438 2.95219 2.97278 3.02024 3.10485 3.14975 3.51202 3.54260 3.82526 3.85413 4.00682 4.46351 4.49991 4.56230 4.69766 4.72818 4.85543 4.88716 4.96224 4.97553 5.04395 5.10550 5.22089 5.26028 5.28761 5.40255 5.48958 5.52912 5.58567 5.66524 5.73265 5.78291 5.99729 6.48778 6.62987 6.64639 7.40589 7.84889 7.88450 7.96632 8.38806 8.48995 8.77670 9.25767 9.58653 10.67635 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.002200 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.190829 B =12725.598266 C =13726.192535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.068 3.932 4 C -0.024 4.024 5 C 0.165 3.835 6 N -0.377 5.377 7 O 0.099 5.901 8 C 0.168 3.832 9 C 0.228 3.772 10 N -0.629 5.629 11 C 0.073 3.927 12 C 0.706 3.294 13 O -0.584 6.584 14 N -0.719 5.719 15 C 0.123 3.877 16 C 0.437 3.563 17 O -0.580 6.580 18 N -0.575 5.575 19 C -0.311 4.311 20 H 0.122 0.878 21 C 0.045 3.955 22 N -0.873 5.873 23 Si 0.879 3.121 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.267 1.267 27 N -0.472 5.472 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.410 0.590 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.375 0.625 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.696 -22.724 -2.000 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.010 4.010 4 C -0.063 4.063 5 C -0.108 4.108 6 N -0.082 5.082 7 O 0.038 5.962 8 C -0.055 4.055 9 C 0.101 3.899 10 N -0.368 5.368 11 C -0.070 4.070 12 C 0.406 3.594 13 O -0.461 6.461 14 N -0.378 5.378 15 C -0.005 4.005 16 C 0.223 3.777 17 O -0.465 6.465 18 N -0.212 5.212 19 C -0.439 4.439 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.512 5.512 23 Si 0.705 3.295 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.192 1.192 27 N -0.207 5.207 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.250 0.750 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.208 0.792 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.468 -23.325 -1.419 26.030 hybrid contribution -0.074 0.857 0.893 1.240 sum 11.394 -22.467 -0.526 25.197 Atomic orbital electron populations 1.22783 0.80194 1.03043 1.00438 1.87810 1.20361 1.27192 1.95550 1.22364 0.92157 0.85203 1.01260 1.19683 0.93403 0.87192 1.06026 1.25505 1.01599 0.99895 0.83823 1.74693 1.14938 0.94483 1.24040 1.85402 1.57268 1.28740 1.24819 1.29643 0.96472 0.96863 0.82484 1.19716 0.88968 0.82899 0.98317 1.46936 1.35626 1.28865 1.25396 1.21916 0.95210 1.03333 0.86508 1.15810 0.81330 0.79550 0.82671 1.90946 1.51288 1.75733 1.28173 1.44904 1.34463 1.29635 1.28755 1.20865 0.98294 0.88508 0.92840 1.19614 0.87237 0.83877 0.86938 1.90530 1.59926 1.70932 1.25115 1.42113 1.30833 1.25935 1.22342 1.19432 1.07372 1.07301 1.09798 0.86073 1.25073 0.96338 0.96104 0.98391 1.69619 1.24564 1.17917 1.39100 0.86669 0.80131 0.79458 0.83243 1.19330 1.19967 1.19189 1.71871 1.16214 1.03157 1.29426 0.93797 0.93717 0.89237 0.92809 0.92410 0.87639 0.88169 0.85417 0.85692 0.91490 0.90186 0.90633 0.75031 0.89772 0.89556 0.79190 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.65 10.70 -35.23 -0.38 -4.03 16 3 C 0.07 0.62 5.92 37.16 0.22 0.84 16 4 C -0.02 -0.21 6.21 -27.88 -0.17 -0.39 16 5 C 0.16 1.88 7.47 -156.37 -1.17 0.71 16 6 N -0.38 -4.99 12.16 30.90 0.38 -4.61 16 7 O 0.10 1.31 11.31 18.09 0.20 1.51 16 8 C 0.17 1.83 8.10 -13.06 -0.11 1.72 16 9 C 0.23 1.88 6.03 -5.20 -0.03 1.85 16 10 N -0.63 -6.60 2.86 -188.74 -0.54 -7.14 16 11 C 0.07 0.59 10.20 59.85 0.61 1.20 16 12 C 0.71 10.17 8.28 -86.91 -0.72 9.45 16 13 O -0.58 -9.96 15.92 5.29 0.08 -9.88 16 14 N -0.72 -11.00 5.39 -66.41 -0.36 -11.36 16 15 C 0.12 2.07 6.15 -5.19 -0.03 2.03 16 16 C 0.44 9.34 7.85 -10.98 -0.09 9.25 16 17 O -0.58 -14.20 15.24 5.55 0.08 -14.12 16 18 N -0.57 -13.08 5.09 -10.96 -0.06 -13.13 16 19 C -0.31 -8.41 10.16 -14.93 -0.15 -8.56 16 20 H 0.12 3.74 7.39 -52.49 -0.39 3.35 16 21 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 22 N -0.87 -24.62 13.96 55.50 0.77 -23.85 16 23 Si 0.88 18.74 27.74 -169.99 -4.71 14.03 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 26 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 27 N -0.47 -5.23 11.55 -9.86 -0.11 -5.35 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.13 0.61 8.07 -51.93 -0.42 0.19 16 36 H 0.13 1.00 7.42 -51.93 -0.39 0.61 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 39 H 0.08 0.70 6.37 -51.92 -0.33 0.37 16 40 H 0.41 6.16 5.17 -40.82 -0.21 5.95 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 44 H 0.28 7.17 8.31 -40.82 -0.34 6.84 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -34.59 383.52 -5.26 -39.85 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.78 Total: 11.76 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: -0.62 Total: 20.54 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: 0.08 Total: -65.44 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: 0.00 Total: -26.52 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.71 Total: 14.03 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.59 -5.26 -39.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478603037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.552 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds