Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.53002 * 109.47325 * 270.27624 * 3 2 1 5 5 N 1.46902 * 109.47239 * 179.97438 * 4 3 2 6 6 C 1.46896 * 110.99767 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46892 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99764 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99758 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99802 * 180.02562 * 9 7 6 11 11 H 1.07996 * 119.99762 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99830 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99803 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00194 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46831 * 90.00190 * 14 12 10 16 16 H 1.48496 * 109.46986 * 210.00229 * 14 12 10 17 17 H 1.48495 * 109.46909 * 330.00526 * 14 12 10 18 18 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 19 19 O 1.21279 * 119.99925 * 179.72608 * 18 2 1 20 20 C 1.50700 * 119.99961 * 359.72839 * 18 2 1 21 21 N 1.46497 * 109.47128 * 180.02562 * 20 18 2 22 22 C 1.34765 * 124.17471 * 269.72220 * 21 20 18 23 23 O 1.21234 * 127.16034 * 0.02562 * 22 21 20 24 24 C 1.51582 * 105.68640 * 179.97438 * 22 21 20 25 25 N 1.47317 * 103.59063 * 0.31745 * 24 22 21 26 26 C 1.33787 * 124.17954 * 90.02516 * 21 20 18 27 27 O 1.21541 * 123.77302 * 359.95886 * 26 21 20 28 28 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 29 29 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 30 30 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 31 31 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 32 32 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 33 33 H 1.08998 * 109.46465 * 299.99693 * 4 3 2 34 34 H 1.08993 * 109.47021 * 59.99589 * 4 3 2 35 35 H 1.00896 * 110.99800 * 56.04217 * 5 4 3 36 36 H 1.09003 * 109.46668 * 299.99040 * 6 5 4 37 37 H 1.08991 * 109.47364 * 59.99519 * 6 5 4 38 38 H 0.97000 * 120.00103 * 359.97438 * 9 7 6 39 39 H 0.96998 * 120.00059 * 179.97438 * 13 12 10 40 40 H 1.09004 * 109.46932 * 300.00223 * 20 18 2 41 41 H 1.08997 * 109.47392 * 59.99562 * 20 18 2 42 42 H 1.09000 * 110.76742 * 241.71714 * 24 22 21 43 43 H 1.08997 * 110.56696 * 118.83271 * 24 22 21 44 44 H 0.96993 * 126.68863 * 179.76444 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4465 1.7138 -1.4425 5 7 3.1806 2.9863 -1.4425 6 6 3.4376 3.4457 -2.8138 7 6 4.1900 4.7509 -2.7736 8 8 4.4829 5.2494 -1.7074 9 7 4.5374 5.3641 -3.9224 10 6 5.2224 6.5511 -3.8858 11 1 5.4832 6.9950 -2.9365 12 6 5.5801 7.1836 -5.0702 13 7 6.2362 8.3217 -5.0351 14 14 5.1284 6.4161 -6.7123 15 1 3.7957 6.9120 -7.1404 16 1 6.1450 6.7881 -7.7288 17 1 5.0854 4.9384 -6.5728 18 6 2.1388 -1.1673 -0.0056 19 8 3.3516 -1.1673 -0.0106 20 6 1.3853 -2.4724 -0.0056 21 7 2.3372 -3.5859 -0.0115 22 6 2.8209 -4.1623 -1.1295 23 8 2.5606 -3.8683 -2.2765 24 6 3.7591 -5.2541 -0.6547 25 7 3.6825 -5.1621 0.8136 26 6 2.8294 -4.1599 1.0922 27 8 2.5373 -3.8154 2.2206 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3634 0.8924 -0.5096 30 1 -0.3634 -0.8874 -0.5181 31 1 1.6106 2.0271 0.5181 32 1 3.1521 1.1371 0.5096 33 1 3.0335 0.9553 -1.9605 34 1 1.4921 1.8454 -1.9520 35 1 4.0402 2.9078 -0.9199 36 1 4.0317 2.6996 -3.3416 37 1 2.4898 3.5890 -3.3326 38 1 4.3035 4.9652 -4.7751 39 1 6.4863 8.7630 -5.8619 40 1 0.7623 -2.5322 0.8868 41 1 0.7549 -2.5280 -0.8930 42 1 4.7763 -5.0659 -0.9981 43 1 3.4147 -6.2302 -0.9963 44 1 4.1549 -5.7160 1.4544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493787417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = -85.178600 kcal Electronic energy + Delta-G solvation = -29096.482882 eV Core-core repulsion = 24665.027653 eV Total energy + Delta-G solvation = -4431.455229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.85038 -40.16226 -39.03519 -38.46244 -36.59973 -36.55595 -35.19738 -35.04549 -33.86104 -31.65855 -30.66372 -28.92879 -27.97890 -27.22309 -25.87570 -23.85538 -23.40478 -22.45449 -21.35879 -19.71802 -19.32335 -18.54758 -18.35249 -18.11319 -17.34089 -16.97194 -16.56518 -16.38916 -15.79241 -15.77078 -15.63643 -15.47110 -14.88709 -14.65097 -14.51850 -14.34864 -13.99605 -13.86302 -13.71799 -13.51195 -13.30642 -13.07525 -12.80972 -12.76050 -12.41185 -12.25877 -11.89402 -11.65089 -11.50800 -11.22186 -11.07007 -10.95368 -10.77840 -10.57915 -10.08233 -9.96071 -9.90182 -9.55597 -9.09926 -8.57337 -8.19242 -8.14401 -6.29339 -3.80674 1.15366 1.53408 2.16470 2.36729 2.61867 2.74014 3.04506 3.08465 3.16394 3.47061 3.75911 3.95450 4.11610 4.15400 4.23170 4.44712 4.50921 4.58941 4.67555 4.82658 4.85647 4.91465 5.00528 5.05561 5.15989 5.24692 5.27426 5.43473 5.61749 5.72491 5.80168 5.85260 5.94339 6.12127 6.22653 6.48284 6.82755 6.92551 7.05519 7.54379 7.59813 7.60149 7.72457 8.16277 8.61626 8.96686 9.44224 9.84483 10.83792 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017877 B = 0.001926 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.919732 B =14535.166015 C =15182.349772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.610 5.610 3 C 0.117 3.883 4 C 0.046 3.954 5 N -0.666 5.666 6 C 0.050 3.950 7 C 0.451 3.549 8 O -0.564 6.564 9 N -0.591 5.591 10 C -0.304 4.304 11 H 0.120 0.880 12 C 0.040 3.960 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.500 3.500 19 O -0.525 6.525 20 C 0.102 3.898 21 N -0.563 5.563 22 C 0.525 3.475 23 O -0.464 6.464 24 C 0.066 3.934 25 N -0.727 5.727 26 C 0.708 3.292 27 O -0.540 6.540 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.353 0.647 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.371 0.629 39 H 0.273 0.727 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.382 -32.119 7.600 35.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C -0.005 4.005 4 C -0.085 4.085 5 N -0.299 5.299 6 C -0.083 4.083 7 C 0.236 3.764 8 O -0.446 6.446 9 N -0.230 5.230 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C 0.286 3.714 19 O -0.400 6.400 20 C -0.023 4.023 21 N -0.310 5.310 22 C 0.313 3.687 23 O -0.333 6.333 24 C -0.062 4.062 25 N -0.392 5.392 26 C 0.408 3.592 27 O -0.413 6.413 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.172 0.828 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -13.356 -30.778 8.238 34.548 hybrid contribution 0.569 -1.222 -1.586 2.082 sum -12.787 -32.001 6.652 35.097 Atomic orbital electron populations 1.21944 0.78844 1.03829 1.02529 1.47754 1.07352 1.05875 1.73456 1.21462 0.98423 0.83471 0.97176 1.22258 0.99101 0.90511 0.96616 1.60004 1.28446 1.27814 1.13663 1.21691 1.00281 0.95946 0.90397 1.19688 0.84831 0.87098 0.84765 1.90564 1.57865 1.66856 1.29290 1.42204 1.52264 1.22349 1.06217 1.19436 1.30928 0.96143 0.96804 0.86260 1.25045 0.97133 0.95999 0.98058 1.69623 1.38355 1.15868 1.28310 0.86661 0.79251 0.79258 0.84165 1.19591 1.20186 1.19529 1.20735 0.88444 0.85518 0.76725 1.90751 1.13616 1.86993 1.48642 1.21510 0.90705 0.82951 1.07131 1.45842 1.43781 1.32622 1.08706 1.20919 0.80372 0.82797 0.84632 1.90851 1.59196 1.65268 1.17994 1.22460 1.02317 1.00123 0.81301 1.45347 1.48667 1.37354 1.07793 1.15749 0.79437 0.79985 0.84001 1.91034 1.63434 1.66691 1.20092 0.91735 0.89955 0.91069 0.88882 0.89601 0.95122 0.90987 0.82786 0.93701 0.89450 0.79681 0.91628 0.85417 0.85603 0.85557 0.85663 0.71247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 10.24 59.84 0.61 0.96 16 2 N -0.61 -5.64 2.87 -181.58 -0.52 -6.16 16 3 C 0.12 1.31 5.66 -4.04 -0.02 1.29 16 4 C 0.05 0.58 6.01 -3.82 -0.02 0.56 16 5 N -0.67 -10.79 6.12 -115.06 -0.70 -11.49 16 6 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 7 C 0.45 10.54 7.82 -10.98 -0.09 10.45 16 8 O -0.56 -15.51 15.78 5.55 0.09 -15.43 16 9 N -0.59 -14.43 5.09 -10.96 -0.06 -14.49 16 10 C -0.30 -8.77 10.16 -14.93 -0.15 -8.93 16 11 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -26.08 13.96 55.50 0.77 -25.31 16 14 Si 0.88 19.69 27.74 -169.99 -4.71 14.98 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.27 -5.53 6.52 56.52 0.37 -5.17 16 18 C 0.50 5.56 7.74 -10.98 -0.09 5.48 16 19 O -0.52 -8.10 16.01 5.56 0.09 -8.01 16 20 C 0.10 0.77 4.74 -5.20 -0.02 0.75 16 21 N -0.56 -4.86 2.09 -122.03 -0.26 -5.12 16 22 C 0.53 4.19 8.31 -10.56 -0.09 4.10 16 23 O -0.46 -5.06 17.76 5.60 0.10 -4.96 16 24 C 0.07 0.23 7.97 -4.31 -0.03 0.19 16 25 N -0.73 -3.54 6.58 -65.73 -0.43 -3.98 16 26 C 0.71 6.48 8.62 -88.02 -0.76 5.72 16 27 O -0.54 -6.82 17.48 5.33 0.09 -6.73 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 30 H 0.07 0.19 6.44 -51.93 -0.33 -0.14 16 31 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 32 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.35 6.06 8.43 -39.29 -0.33 5.73 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.37 7.95 5.76 -40.82 -0.24 7.72 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.13 0.72 7.83 -51.93 -0.41 0.32 16 41 H 0.13 0.65 7.25 -51.93 -0.38 0.27 16 42 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.13 0.04 8.14 -51.93 -0.42 -0.38 16 44 H 0.44 1.06 8.96 -40.82 -0.37 0.70 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -41.26 382.10 -6.36 -47.62 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.79 Total: 10.88 kcal Atomic # 6 Polarization: 23.23 SS G_CDS: -0.79 Total: 22.44 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -1.20 Total: -66.54 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: 0.37 Total: -35.13 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.71 Total: 14.98 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -41.26 -6.36 -47.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493787417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.558 kcal (2) G-P(sol) polarization free energy of solvation -41.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds