Wall clock time and date at job start Sat Apr 11 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.53002 * 109.47325 * 270.27624 * 3 2 1 5 5 N 1.46902 * 109.47239 * 179.97438 * 4 3 2 6 6 C 1.46896 * 110.99767 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46892 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99764 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99758 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99802 * 180.02562 * 9 7 6 11 11 H 1.07996 * 119.99762 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99830 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99803 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00194 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46831 * 90.00190 * 14 12 10 16 16 H 1.48496 * 109.46986 * 210.00229 * 14 12 10 17 17 H 1.48495 * 109.46909 * 330.00526 * 14 12 10 18 18 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 19 19 O 1.21279 * 119.99925 * 179.72608 * 18 2 1 20 20 C 1.50700 * 119.99961 * 359.72839 * 18 2 1 21 21 N 1.46497 * 109.47128 * 180.02562 * 20 18 2 22 22 C 1.34765 * 124.17471 * 269.72220 * 21 20 18 23 23 O 1.21234 * 127.16034 * 0.02562 * 22 21 20 24 24 C 1.51582 * 105.68640 * 179.97438 * 22 21 20 25 25 N 1.47317 * 103.59063 * 0.31745 * 24 22 21 26 26 C 1.33787 * 124.17954 * 90.02516 * 21 20 18 27 27 O 1.21541 * 123.77302 * 359.95886 * 26 21 20 28 28 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 29 29 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 30 30 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 31 31 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 32 32 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 33 33 H 1.08998 * 109.46465 * 299.99693 * 4 3 2 34 34 H 1.08993 * 109.47021 * 59.99589 * 4 3 2 35 35 H 1.00896 * 110.99800 * 56.04217 * 5 4 3 36 36 H 1.09003 * 109.46668 * 299.99040 * 6 5 4 37 37 H 1.08991 * 109.47364 * 59.99519 * 6 5 4 38 38 H 0.97000 * 120.00103 * 359.97438 * 9 7 6 39 39 H 0.96998 * 120.00059 * 179.97438 * 13 12 10 40 40 H 1.09004 * 109.46932 * 300.00223 * 20 18 2 41 41 H 1.08997 * 109.47392 * 59.99562 * 20 18 2 42 42 H 1.09000 * 110.76742 * 241.71714 * 24 22 21 43 43 H 1.08997 * 110.56696 * 118.83271 * 24 22 21 44 44 H 0.96993 * 126.68863 * 179.76444 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4465 1.7138 -1.4425 5 7 3.1806 2.9863 -1.4425 6 6 3.4376 3.4457 -2.8138 7 6 4.1900 4.7509 -2.7736 8 8 4.4829 5.2494 -1.7074 9 7 4.5374 5.3641 -3.9224 10 6 5.2224 6.5511 -3.8858 11 1 5.4832 6.9950 -2.9365 12 6 5.5801 7.1836 -5.0702 13 7 6.2362 8.3217 -5.0351 14 14 5.1284 6.4161 -6.7123 15 1 3.7957 6.9120 -7.1404 16 1 6.1450 6.7881 -7.7288 17 1 5.0854 4.9384 -6.5728 18 6 2.1388 -1.1673 -0.0056 19 8 3.3516 -1.1673 -0.0106 20 6 1.3853 -2.4724 -0.0056 21 7 2.3372 -3.5859 -0.0115 22 6 2.8209 -4.1623 -1.1295 23 8 2.5606 -3.8683 -2.2765 24 6 3.7591 -5.2541 -0.6547 25 7 3.6825 -5.1621 0.8136 26 6 2.8294 -4.1599 1.0922 27 8 2.5373 -3.8154 2.2206 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3634 0.8924 -0.5096 30 1 -0.3634 -0.8874 -0.5181 31 1 1.6106 2.0271 0.5181 32 1 3.1521 1.1371 0.5096 33 1 3.0335 0.9553 -1.9605 34 1 1.4921 1.8454 -1.9520 35 1 4.0402 2.9078 -0.9199 36 1 4.0317 2.6996 -3.3416 37 1 2.4898 3.5890 -3.3326 38 1 4.3035 4.9652 -4.7751 39 1 6.4863 8.7630 -5.8619 40 1 0.7623 -2.5322 0.8868 41 1 0.7549 -2.5280 -0.8930 42 1 4.7763 -5.0659 -0.9981 43 1 3.4147 -6.2302 -0.9963 44 1 4.1549 -5.7160 1.4544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493787417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:36 Heat of formation + Delta-G solvation = -122.914844 kcal Electronic energy + Delta-G solvation = -29098.119249 eV Core-core repulsion = 24665.027653 eV Total energy + Delta-G solvation = -4433.091595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.43016 -40.97422 -40.32601 -39.70943 -37.63795 -37.23373 -36.33083 -35.83973 -35.66239 -33.77887 -31.63707 -29.70944 -28.52757 -28.13266 -27.11394 -25.44966 -23.98999 -23.49276 -22.04590 -21.34002 -20.49346 -20.17715 -19.12998 -18.80763 -18.00636 -17.88575 -17.64600 -17.24783 -17.14699 -16.69504 -16.65098 -16.36428 -16.23950 -15.63850 -15.45275 -15.32152 -15.08707 -14.94757 -14.87258 -14.50670 -14.30575 -14.10356 -13.99636 -13.87038 -13.50930 -13.40842 -13.15424 -12.93688 -12.74973 -12.43508 -12.23252 -12.11998 -11.99614 -11.75054 -11.53894 -11.42224 -10.76563 -10.51767 -10.43649 -10.27629 -9.82969 -9.48579 -8.43280 -6.04583 0.57702 0.98678 1.29193 1.34239 1.37015 1.43369 1.70159 1.90995 2.03707 2.21462 2.25144 2.72437 3.00936 3.12237 3.29506 3.46560 3.69384 3.93394 4.04134 4.05905 4.10673 4.24887 4.27259 4.29066 4.33851 4.37755 4.44205 4.51456 4.62611 4.69794 4.75324 4.91194 4.96770 5.33683 5.50182 5.79622 5.82787 5.92951 5.95894 6.17441 6.21043 6.32046 6.56626 6.84814 6.92199 7.05196 7.36033 7.92012 8.74292 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017877 B = 0.001926 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.919732 B =14535.166015 C =15182.349772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.606 5.606 3 C 0.121 3.879 4 C 0.057 3.943 5 N -0.679 5.679 6 C 0.063 3.937 7 C 0.448 3.552 8 O -0.614 6.614 9 N -0.589 5.589 10 C -0.330 4.330 11 H 0.055 0.945 12 C -0.016 4.016 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.254 1.254 16 H -0.274 1.274 17 H -0.234 1.234 18 C 0.490 3.510 19 O -0.579 6.579 20 C 0.101 3.899 21 N -0.569 5.569 22 C 0.517 3.483 23 O -0.499 6.499 24 C 0.074 3.926 25 N -0.709 5.709 26 C 0.699 3.301 27 O -0.584 6.584 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.018 0.982 34 H 0.095 0.905 35 H 0.342 0.658 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.390 0.610 39 H 0.280 0.720 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.168 0.832 44 H 0.455 0.545 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.643 -35.548 5.309 39.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.338 5.338 3 C -0.002 4.002 4 C -0.073 4.073 5 N -0.311 5.311 6 C -0.069 4.069 7 C 0.236 3.764 8 O -0.498 6.498 9 N -0.231 5.231 10 C -0.459 4.459 11 H 0.074 0.926 12 C -0.214 4.214 13 N -0.573 5.573 14 Si 0.786 3.214 15 H -0.179 1.179 16 H -0.199 1.199 17 H -0.157 1.157 18 C 0.278 3.722 19 O -0.459 6.459 20 C -0.023 4.023 21 N -0.315 5.315 22 C 0.307 3.693 23 O -0.371 6.371 24 C -0.052 4.052 25 N -0.374 5.374 26 C 0.399 3.601 27 O -0.461 6.461 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.113 0.887 35 H 0.160 0.840 36 H 0.087 0.913 37 H 0.139 0.861 38 H 0.226 0.774 39 H 0.089 0.911 40 H 0.164 0.836 41 H 0.170 0.830 42 H 0.164 0.836 43 H 0.185 0.815 44 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -15.658 -34.262 5.947 38.137 hybrid contribution 1.286 -0.105 -0.740 1.487 sum -14.372 -34.368 5.207 37.614 Atomic orbital electron populations 1.22287 0.75839 1.05653 1.04087 1.47864 1.09098 1.04622 1.72250 1.21287 0.97858 0.84841 0.96236 1.22246 0.99167 0.88371 0.97510 1.60039 1.28170 1.29933 1.12985 1.21626 1.01110 0.92488 0.91690 1.20901 0.83490 0.88443 0.83578 1.90543 1.59435 1.68629 1.31197 1.42019 1.52223 1.21238 1.07619 1.19013 1.33357 0.98506 0.95070 0.92647 1.26143 0.96078 0.96169 1.03050 1.69803 1.39461 1.17829 1.30228 0.85345 0.79371 0.80125 0.76555 1.17853 1.19907 1.15737 1.21436 0.88097 0.86984 0.75712 1.90716 1.16000 1.87857 1.51326 1.21701 0.90472 0.80943 1.09213 1.46008 1.43881 1.32643 1.08950 1.21627 0.80381 0.83299 0.83972 1.90827 1.60576 1.66591 1.19090 1.22718 1.02287 1.00394 0.79813 1.45352 1.47110 1.35953 1.08958 1.15998 0.79931 0.80630 0.83498 1.90997 1.65197 1.68230 1.21633 0.90351 0.89020 0.88402 0.87653 0.92411 0.96348 0.88679 0.83973 0.91313 0.86130 0.77432 0.91065 0.83593 0.82962 0.83580 0.81468 0.69802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 10.24 127.77 1.31 1.74 16 2 N -0.61 -10.39 2.87 -846.77 -2.43 -12.83 16 3 C 0.12 2.65 5.66 86.38 0.49 3.14 16 4 C 0.06 1.35 6.01 86.30 0.52 1.87 16 5 N -0.68 -21.37 6.12 -517.94 -3.17 -24.55 16 6 C 0.06 2.06 6.17 85.56 0.53 2.58 16 7 C 0.45 21.00 7.82 87.66 0.69 21.68 16 8 O -0.61 -35.14 15.78 -3.05 -0.05 -35.19 16 9 N -0.59 -28.59 5.09 -306.98 -1.56 -30.16 16 10 C -0.33 -19.76 10.16 84.04 0.85 -18.91 16 11 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 12 C -0.02 -0.88 5.50 84.93 0.47 -0.42 16 13 N -0.93 -56.92 13.96 21.66 0.30 -56.62 16 14 Si 0.97 39.39 27.74 68.60 1.90 41.29 16 15 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 16 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 17 H -0.23 -8.12 6.52 99.48 0.65 -7.47 16 18 C 0.49 10.66 7.74 87.66 0.68 11.34 16 19 O -0.58 -18.40 16.01 -3.03 -0.05 -18.45 16 20 C 0.10 1.39 4.74 85.63 0.41 1.80 16 21 N -0.57 -9.22 2.09 -777.23 -1.63 -10.84 16 22 C 0.52 7.44 8.31 87.94 0.73 8.17 16 23 O -0.50 -10.27 17.76 -2.89 -0.05 -10.32 16 24 C 0.07 0.31 7.97 85.76 0.68 0.99 16 25 N -0.71 -5.56 6.58 -480.30 -3.16 -8.72 16 26 C 0.70 12.25 8.62 179.44 1.55 13.80 16 27 O -0.58 -14.83 17.48 -3.84 -0.07 -14.90 16 28 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.09 0.51 8.07 -2.39 -0.02 0.49 16 30 H 0.10 0.17 6.44 -2.39 -0.02 0.15 16 31 H 0.11 2.02 8.07 -2.39 -0.02 2.00 16 32 H 0.06 1.60 7.42 -2.38 -0.02 1.58 16 33 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.34 12.00 8.43 -89.70 -0.76 11.24 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.39 15.66 5.76 -92.71 -0.53 15.13 16 39 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.15 1.41 7.83 -2.38 -0.02 1.39 16 41 H 0.15 1.19 7.25 -2.39 -0.02 1.17 16 42 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.17 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H 0.45 1.27 8.96 -92.71 -0.83 0.44 16 Total: -1.00 -98.59 382.10 -2.16 -100.76 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -1.09 Total: 32.74 kcal Atomic # 6 Polarization: 38.88 SS G_CDS: 8.90 Total: 47.78 kcal Atomic # 7 Polarization: -132.06 SS G_CDS: -11.65 Total: -143.71 kcal Atomic # 8 Polarization: -78.64 SS G_CDS: -0.22 Total: -78.85 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 1.90 Total: 41.29 kcal Total: -98.59 -2.16 -100.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493787417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.157 kcal (2) G-P(sol) polarization free energy of solvation -98.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds