Wall clock time and date at job start Sat Apr 11 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36942 * 120.00220 * 2 1 4 4 H 1.08001 * 120.00120 * 202.46740 * 3 2 1 5 5 C 1.38806 * 119.99501 * 22.47060 * 3 2 1 6 6 N 1.31619 * 120.00439 * 13.55380 * 5 3 2 7 7 Si 1.86808 * 119.99731 * 193.55614 * 5 3 2 8 8 H 1.48500 * 109.46901 * 90.00237 * 7 5 3 9 9 H 1.48496 * 109.47155 * 209.99912 * 7 5 3 10 10 H 1.48497 * 109.47018 * 330.00015 * 7 5 3 11 11 C 1.46501 * 119.99940 * 180.02562 * 2 1 3 12 12 C 1.50695 * 109.47462 * 268.99345 * 11 2 1 13 13 C 1.38258 * 119.99623 * 1.56546 * 12 11 2 14 14 C 1.38213 * 120.00111 * 179.97438 * 13 12 11 15 15 C 1.38259 * 119.99856 * 0.02562 * 14 13 12 16 16 C 1.38208 * 119.99953 * 359.97438 * 15 14 13 17 17 C 1.38206 * 120.00563 * 181.53932 * 12 11 2 18 18 C 1.50699 * 119.99754 * 359.72580 * 17 12 11 19 19 N 1.46495 * 109.47409 * 77.59280 * 18 17 12 20 20 C 1.34777 * 120.00254 * 179.97438 * 19 18 17 21 21 O 1.21534 * 120.00145 * 0.02562 * 20 19 18 22 22 C 1.47978 * 120.00117 * 179.97438 * 20 19 18 23 23 C 1.39916 * 120.91163 * 359.72373 * 22 20 19 24 24 C 1.38015 * 119.00564 * 179.75146 * 23 22 20 25 25 N 1.31989 * 120.89054 * 0.53192 * 24 23 22 26 26 O 1.41604 * 118.98388 * 179.71756 * 25 24 23 27 27 C 1.31984 * 122.03066 * 359.73987 * 25 24 23 28 28 C 1.38017 * 120.88663 * 359.97438 * 27 25 24 29 29 H 1.09003 * 109.46977 * 273.72868 * 1 2 3 30 30 H 1.08998 * 109.47132 * 33.73305 * 1 2 3 31 31 H 1.09003 * 109.47151 * 153.73118 * 1 2 3 32 32 H 0.97005 * 120.00203 * 179.97438 * 6 5 3 33 33 H 1.09005 * 109.47375 * 148.99248 * 11 2 1 34 34 H 1.08998 * 109.47451 * 29.00136 * 11 2 1 35 35 H 1.08003 * 120.00373 * 359.97438 * 13 12 11 36 36 H 1.08004 * 120.00410 * 179.97438 * 14 13 12 37 37 H 1.07999 * 119.99977 * 179.97438 * 15 14 13 38 38 H 1.08002 * 119.99721 * 180.02562 * 16 15 14 39 39 H 1.09005 * 109.47226 * 197.59096 * 18 17 12 40 40 H 1.09005 * 109.47182 * 317.59132 * 18 17 12 41 41 H 0.96999 * 119.99838 * 359.97438 * 19 18 17 42 42 H 1.07999 * 120.49585 * 359.97438 * 23 22 20 43 43 H 1.08001 * 119.55053 * 180.25444 * 24 23 22 44 44 H 1.07996 * 119.56230 * 179.97438 * 27 25 24 45 45 H 1.07997 * 120.49166 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1682 1.2214 -0.3574 5 6 1.5347 2.3424 0.4595 6 7 0.4083 2.2645 1.1359 7 14 2.3056 4.0092 0.1177 8 1 1.7859 4.5407 -1.1679 9 1 1.9627 4.9478 1.2161 10 1 3.7811 3.8642 0.0331 11 6 2.1974 -1.2687 -0.0006 12 6 2.4703 -1.6920 1.4198 13 6 2.0089 -0.9219 2.4712 14 6 2.2586 -1.3102 3.7740 15 6 2.9702 -2.4686 4.0256 16 6 3.4314 -3.2385 2.9745 17 6 3.1811 -2.8502 1.6714 18 6 3.6781 -3.6932 0.5253 19 7 4.8707 -3.0723 -0.0564 20 6 5.4919 -3.6544 -1.1012 21 8 5.0625 -4.6941 -1.5612 22 6 6.6962 -3.0269 -1.6891 23 6 7.2030 -1.8266 -1.1792 24 6 8.3316 -1.2786 -1.7543 25 7 8.9242 -1.8658 -2.7771 26 8 10.0764 -1.2651 -3.3399 27 6 8.4757 -2.9954 -3.2918 28 6 7.3561 -3.6147 -2.7739 29 1 -0.3633 0.0668 1.0255 30 1 -0.3633 0.8546 -0.5707 31 1 -0.3633 -0.9216 -0.4548 32 1 -0.0213 3.0727 1.4573 33 1 3.1420 -1.1428 -0.5299 34 1 1.6008 -2.0326 -0.4991 35 1 1.4534 -0.0168 2.2747 36 1 1.8986 -0.7085 4.5954 37 1 3.1657 -2.7719 5.0435 38 1 3.9869 -4.1436 3.1711 39 1 3.9282 -4.6899 0.8891 40 1 2.9002 -3.7683 -0.2346 41 1 5.2132 -2.2423 0.3105 42 1 6.7203 -1.3381 -0.3456 43 1 8.7327 -0.3545 -1.3650 44 1 8.9915 -3.4412 -4.1293 45 1 6.9944 -4.5386 -3.2003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501658502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:43 Heat of formation + Delta-G solvation = 82.724001 kcal Electronic energy + Delta-G solvation = -29056.000733 eV Core-core repulsion = 25042.675571 eV Total energy + Delta-G solvation = -4013.325163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -41.74458 -39.98748 -38.96139 -35.68189 -35.21322 -34.86466 -32.41359 -32.03930 -31.24582 -30.14792 -29.99841 -26.88700 -26.13892 -25.66025 -24.88253 -24.40780 -22.26867 -21.20433 -21.02099 -20.11835 -18.95529 -17.75200 -17.34218 -16.85211 -16.28589 -16.06072 -15.95970 -15.80084 -15.51903 -14.92420 -14.69079 -14.55604 -14.41113 -14.01398 -13.72218 -13.30414 -13.10229 -12.98172 -12.73460 -12.63740 -12.48460 -12.27590 -11.68438 -11.43266 -11.42550 -10.99426 -10.87323 -10.64802 -10.60386 -10.44097 -10.36168 -10.16313 -10.13076 -9.97783 -9.63726 -9.34056 -8.88775 -8.68277 -8.44230 -8.14682 -6.95789 -5.88085 -3.35000 -0.20495 0.18956 1.56113 1.88550 2.19359 2.22688 2.83031 3.04364 3.29183 3.36154 3.37741 3.90608 4.03932 4.08938 4.13508 4.28734 4.37692 4.45096 4.77266 4.97521 5.01887 5.10735 5.20861 5.27292 5.31839 5.34261 5.42333 5.47629 5.63405 5.70522 5.90014 6.05229 6.16212 6.20568 6.31941 6.36249 6.43917 6.62567 6.64166 6.71761 6.79284 7.08719 7.14030 7.24962 7.30653 7.57519 7.59808 7.69075 7.78497 8.24060 9.08305 9.70127 10.19029 11.16634 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008728 B = 0.003649 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.378634 B = 7672.260022 C = 9648.076690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.598 5.598 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.007 3.993 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.181 3.819 12 C -0.074 4.074 13 C -0.085 4.085 14 C -0.118 4.118 15 C -0.140 4.140 16 C -0.113 4.113 17 C -0.133 4.133 18 C 0.168 3.832 19 N -0.707 5.707 20 C 0.558 3.442 21 O -0.526 6.526 22 C -0.090 4.090 23 C -0.088 4.088 24 C 0.073 3.927 25 N -0.107 5.107 26 O -0.541 6.541 27 C 0.068 3.932 28 C -0.065 4.065 29 H 0.030 0.970 30 H 0.046 0.954 31 H -0.002 1.002 32 H 0.254 0.746 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.162 0.838 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.405 0.595 42 H 0.169 0.831 43 H 0.190 0.810 44 H 0.189 0.811 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.584 -12.909 1.166 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.320 5.320 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.192 4.192 6 N -0.550 5.550 7 Si 0.732 3.268 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.053 3.947 12 C -0.078 4.078 13 C -0.102 4.102 14 C -0.137 4.137 15 C -0.158 4.158 16 C -0.132 4.132 17 C -0.134 4.134 18 C 0.046 3.954 19 N -0.358 5.358 20 C 0.344 3.656 21 O -0.403 6.403 22 C -0.101 4.101 23 C -0.107 4.107 24 C -0.072 4.072 25 N 0.215 4.785 26 O -0.598 6.598 27 C -0.077 4.077 28 C -0.085 4.085 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.016 0.984 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.180 0.820 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.241 0.759 42 H 0.186 0.814 43 H 0.207 0.793 44 H 0.206 0.794 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 7.460 -13.329 0.727 15.292 hybrid contribution 0.614 1.571 0.273 1.709 sum 8.075 -11.758 1.000 14.299 Atomic orbital electron populations 1.20860 0.82306 0.95918 0.99412 1.43937 1.01937 1.00425 1.85700 1.19126 0.98053 0.85220 1.36175 0.91519 1.24953 0.97778 0.98372 0.98059 1.70021 1.19216 1.27380 1.38373 0.86305 0.78740 0.84212 0.77549 1.21470 1.21715 1.20531 1.19915 0.96136 0.88616 0.90023 1.21303 0.94368 0.92466 0.99652 1.21804 0.97206 1.00493 0.90728 1.21320 0.98512 0.96323 0.97500 1.20992 1.00413 0.96158 0.98243 1.20825 1.00666 0.99574 0.92112 1.19582 1.03015 0.97317 0.93492 1.20206 0.86217 0.95092 0.93874 1.46048 1.29463 1.27654 1.32634 1.17847 0.82819 0.84565 0.80413 1.90818 1.65684 1.22770 1.61069 1.20657 0.96813 0.95551 0.97056 1.22093 0.94203 0.94333 1.00088 1.22648 0.94033 1.00770 0.89797 1.43361 1.14863 1.09151 1.11098 1.97682 1.13860 1.73413 1.74804 1.22681 0.96321 0.87923 1.00820 1.21961 0.92100 1.00744 0.93660 0.95132 0.93569 0.98359 0.93536 0.92568 0.92878 0.82014 0.86807 0.87034 0.86984 0.90687 0.90079 0.75918 0.81354 0.79332 0.79424 0.80656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.58 8.72 59.84 0.52 4.10 16 2 N -0.60 -13.23 1.74 -182.50 -0.32 -13.55 16 3 C -0.26 -6.24 9.03 -15.06 -0.14 -6.38 16 4 H 0.07 1.60 7.86 -52.49 -0.41 1.18 16 5 C 0.01 0.18 5.08 -17.43 -0.09 0.09 16 6 N -0.91 -23.82 10.72 55.49 0.59 -23.22 16 7 Si 0.90 20.37 29.58 -169.99 -5.03 15.34 16 8 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 9 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 11 C 0.18 3.22 4.95 -5.20 -0.03 3.20 16 12 C -0.07 -1.23 5.88 -104.63 -0.61 -1.85 16 13 C -0.08 -1.57 9.16 -39.58 -0.36 -1.93 16 14 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 15 C -0.14 -1.87 10.05 -39.58 -0.40 -2.26 16 16 C -0.11 -1.42 9.67 -39.58 -0.38 -1.80 16 17 C -0.13 -1.77 5.25 -104.63 -0.55 -2.32 16 18 C 0.17 1.92 5.16 -5.20 -0.03 1.89 16 19 N -0.71 -7.09 5.03 -62.39 -0.31 -7.41 16 20 C 0.56 5.86 7.79 -12.27 -0.10 5.76 16 21 O -0.53 -7.05 16.44 5.34 0.09 -6.96 16 22 C -0.09 -0.75 5.91 -104.65 -0.62 -1.37 16 23 C -0.09 -0.63 9.61 -39.04 -0.38 -1.01 16 24 C 0.07 0.66 10.67 -17.57 -0.19 0.47 16 25 N -0.11 -1.30 3.58 -13.30 -0.05 -1.35 16 26 O -0.54 -10.07 20.04 -11.47 -0.23 -10.30 16 27 C 0.07 0.59 10.67 -17.57 -0.19 0.40 16 28 C -0.07 -0.48 9.68 -39.03 -0.38 -0.86 16 29 H 0.03 0.73 6.90 -51.93 -0.36 0.37 16 30 H 0.05 1.13 7.23 -51.93 -0.38 0.75 16 31 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 32 H 0.25 6.61 8.31 -40.82 -0.34 6.28 16 33 H 0.06 0.95 7.55 -51.93 -0.39 0.56 16 34 H 0.05 0.90 7.36 -51.93 -0.38 0.52 16 35 H 0.16 3.68 5.81 -52.48 -0.31 3.38 16 36 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 37 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.11 1.14 8.02 -52.49 -0.42 0.72 16 39 H 0.07 0.79 7.98 -51.93 -0.41 0.38 16 40 H 0.08 1.00 7.22 -51.93 -0.37 0.63 16 41 H 0.40 3.56 6.60 -40.82 -0.27 3.29 16 42 H 0.17 0.83 6.53 -52.49 -0.34 0.49 16 43 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.19 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.18 1.00 7.74 -52.49 -0.41 0.60 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -34.14 380.93 -9.50 -43.64 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.69 Total: 4.20 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -4.30 Total: -6.13 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.08 Total: -45.53 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.14 Total: -17.26 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.14 -9.50 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501658502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.366 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds