Wall clock time and date at job start Sat Apr 11 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 120.00214 * 2 1 4 4 H 1.07997 * 119.99807 * 202.70294 * 3 2 1 5 5 C 1.38810 * 119.99808 * 22.70061 * 3 2 1 6 6 N 1.31617 * 119.99914 * 11.60607 * 5 3 2 7 7 Si 1.86803 * 119.99884 * 191.60095 * 5 3 2 8 8 H 1.48499 * 109.46977 * 90.00662 * 7 5 3 9 9 H 1.48497 * 109.46933 * 210.00298 * 7 5 3 10 10 H 1.48495 * 109.47062 * 330.00403 * 7 5 3 11 11 C 1.46502 * 119.99905 * 180.02562 * 2 1 3 12 12 C 1.50695 * 109.47069 * 274.34968 * 11 2 1 13 13 C 1.38255 * 120.00051 * 353.98209 * 12 11 2 14 14 C 1.38217 * 120.00315 * 179.97438 * 13 12 11 15 15 C 1.38254 * 119.99961 * 0.02562 * 14 13 12 16 16 C 1.38217 * 119.99763 * 359.97438 * 15 14 13 17 17 C 1.38211 * 120.00382 * 173.70470 * 12 11 2 18 18 C 1.50703 * 119.99835 * 0.02562 * 17 12 11 19 19 N 1.46501 * 109.47391 * 75.31757 * 18 17 12 20 20 C 1.34770 * 119.99875 * 179.97438 * 19 18 17 21 21 O 1.21517 * 120.00495 * 0.02562 * 20 19 18 22 22 C 1.48157 * 120.00127 * 180.02562 * 20 19 18 23 23 C 1.39158 * 119.69660 * 180.02562 * 22 20 19 24 24 C 1.38738 * 119.19343 * 179.97438 * 23 22 20 25 25 C 1.38370 * 118.55303 * 0.02562 * 24 23 22 26 26 C 1.39246 * 119.30918 * 359.97438 * 25 24 23 27 27 O 1.35673 * 119.61569 * 180.02562 * 26 25 24 28 28 N 1.31922 * 120.76670 * 359.73094 * 26 25 24 29 29 H 1.08998 * 109.46347 * 274.95343 * 1 2 3 30 30 H 1.09001 * 109.47070 * 34.95128 * 1 2 3 31 31 H 1.09002 * 109.47084 * 154.95652 * 1 2 3 32 32 H 0.97000 * 119.99804 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47255 * 154.35220 * 11 2 1 34 34 H 1.09004 * 109.47337 * 34.34903 * 11 2 1 35 35 H 1.08008 * 120.00131 * 0.02562 * 13 12 11 36 36 H 1.07998 * 119.99689 * 179.97438 * 14 13 12 37 37 H 1.07994 * 120.00222 * 179.97438 * 15 14 13 38 38 H 1.08005 * 119.99900 * 179.97438 * 16 15 14 39 39 H 1.09002 * 109.47190 * 195.32572 * 18 17 12 40 40 H 1.09001 * 109.46809 * 315.31877 * 18 17 12 41 41 H 0.96997 * 119.99515 * 0.02562 * 19 18 17 42 42 H 1.08006 * 120.40407 * 359.97438 * 23 22 20 43 43 H 1.08000 * 120.72288 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.34525 * 179.97438 * 25 24 23 45 45 H 0.96703 * 113.99912 * 90.00250 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1670 1.2221 -0.3610 5 6 1.5364 2.3415 0.4639 6 7 0.3927 2.2651 1.1109 7 14 2.3342 4.0048 0.1702 8 1 1.8527 4.5640 -1.1185 9 1 1.9744 4.9285 1.2758 10 1 3.8096 3.8441 0.1197 11 6 2.1975 -1.2688 -0.0006 12 6 2.3553 -1.7583 1.4159 13 6 1.9488 -0.9633 2.4714 14 6 2.0930 -1.4124 3.7706 15 6 2.6444 -2.6565 4.0147 16 6 3.0508 -3.4513 2.9594 17 6 2.9012 -3.0044 1.6597 18 6 3.3392 -3.8734 0.5090 19 7 4.5993 -3.3627 -0.0367 20 6 5.1839 -3.9859 -1.0789 21 8 4.6657 -4.9710 -1.5664 22 6 6.4584 -3.4698 -1.6305 23 6 7.0563 -4.1179 -2.7071 24 6 8.2495 -3.6254 -3.2156 25 6 8.8044 -2.5015 -2.6295 26 6 8.1536 -1.9015 -1.5545 27 8 8.6920 -0.7990 -0.9755 28 7 7.0168 -2.3894 -1.0963 29 1 -0.3632 0.0887 1.0239 30 1 -0.3633 0.8423 -0.5887 31 1 -0.3633 -0.9311 -0.4350 32 1 -0.0357 3.0726 1.4354 33 1 3.1815 -1.1200 -0.4453 34 1 1.6444 -2.0074 -0.5808 35 1 1.5177 0.0085 2.2808 36 1 1.7758 -0.7911 4.5950 37 1 2.7575 -3.0073 5.0297 38 1 3.4820 -4.4231 3.1501 39 1 3.4827 -4.8954 0.8596 40 1 2.5748 -3.8598 -0.2679 41 1 5.0130 -2.5766 0.3526 42 1 6.5971 -4.9936 -3.1415 43 1 8.7346 -4.1087 -4.0508 44 1 9.7326 -2.0938 -3.0019 45 1 8.3973 0.0346 -1.3672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501660912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:47 Heat of formation + Delta-G solvation = -3.485790 kcal Electronic energy + Delta-G solvation = -29226.097517 eV Core-core repulsion = 25209.034018 eV Total energy + Delta-G solvation = -4017.063500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.81560 -40.77663 -39.94927 -37.91239 -37.37551 -36.08875 -33.89784 -33.63782 -32.31238 -31.50164 -31.37741 -28.17683 -27.76685 -27.06783 -25.26661 -24.22916 -23.85587 -22.30804 -21.93075 -21.41955 -19.88688 -18.95947 -18.72967 -17.71071 -17.37702 -17.02428 -16.94038 -16.71666 -16.45772 -16.33454 -15.84756 -15.54191 -15.50030 -15.02805 -14.78092 -14.58407 -14.37093 -14.09430 -13.97208 -13.63417 -13.45829 -13.29256 -13.17193 -13.00797 -12.82185 -12.78029 -12.56668 -12.31266 -12.07008 -11.95816 -11.83889 -11.64019 -11.61230 -11.03232 -10.63009 -10.54540 -10.25221 -9.96877 -9.63164 -9.40043 -8.82723 -7.81088 -5.30202 -0.45824 0.10478 0.40147 0.66363 1.45832 1.46729 1.54750 1.60709 2.08507 2.49210 2.50757 2.76015 3.02501 3.32867 3.43699 3.65242 3.74652 3.86439 3.93543 4.04708 4.06792 4.19759 4.37262 4.37634 4.40210 4.52121 4.58112 4.71741 4.75476 4.79887 4.82246 4.96382 5.02293 5.05993 5.21476 5.28291 5.30635 5.37498 5.44041 5.61201 5.64317 5.69939 5.84858 5.97658 6.26002 6.31065 6.35002 6.54586 6.74793 7.04712 7.16053 7.84999 8.30356 9.21486 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008788 B = 0.003844 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.387605 B = 7282.501707 C = 9054.798951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.609 5.609 3 C -0.256 4.256 4 H 0.064 0.936 5 C -0.043 4.043 6 N -0.931 5.931 7 Si 0.961 3.039 8 H -0.288 1.288 9 H -0.295 1.295 10 H -0.271 1.271 11 C 0.187 3.813 12 C -0.090 4.090 13 C -0.115 4.115 14 C -0.129 4.129 15 C -0.128 4.128 16 C -0.105 4.105 17 C -0.119 4.119 18 C 0.170 3.830 19 N -0.697 5.697 20 C 0.567 3.433 21 O -0.561 6.561 22 C 0.079 3.921 23 C -0.124 4.124 24 C -0.053 4.053 25 C -0.150 4.150 26 C 0.294 3.706 27 O -0.492 6.492 28 N -0.508 5.508 29 H 0.010 0.990 30 H 0.019 0.981 31 H 0.021 0.979 32 H 0.247 0.753 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.412 0.588 42 H 0.159 0.841 43 H 0.191 0.809 44 H 0.179 0.821 45 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.923 -13.141 -4.779 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.332 5.332 3 C -0.386 4.386 4 H 0.082 0.918 5 C -0.238 4.238 6 N -0.578 5.578 7 Si 0.790 3.210 8 H -0.215 1.215 9 H -0.222 1.222 10 H -0.196 1.196 11 C 0.061 3.939 12 C -0.093 4.093 13 C -0.133 4.133 14 C -0.147 4.147 15 C -0.146 4.146 16 C -0.123 4.123 17 C -0.120 4.120 18 C 0.048 3.952 19 N -0.346 5.346 20 C 0.353 3.647 21 O -0.441 6.441 22 C -0.058 4.058 23 C -0.145 4.145 24 C -0.078 4.078 25 C -0.171 4.171 26 C 0.112 3.888 27 O -0.302 6.302 28 N -0.230 5.230 29 H 0.028 0.972 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.248 0.752 42 H 0.177 0.823 43 H 0.208 0.792 44 H 0.197 0.803 45 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 15.307 -13.653 -4.009 20.899 hybrid contribution 0.081 1.963 -0.422 2.010 sum 15.388 -11.690 -4.430 19.826 Atomic orbital electron populations 1.20560 0.82638 0.95555 0.97928 1.44048 1.01998 1.01273 1.85837 1.19374 0.97992 0.86412 1.34852 0.91795 1.25625 0.98376 1.01202 0.98620 1.70194 1.19330 1.27330 1.40932 0.85360 0.78413 0.80491 0.76750 1.21492 1.22202 1.19616 1.19893 0.95833 0.86872 0.91291 1.20984 0.96690 0.93588 0.98016 1.21451 0.98593 1.00473 0.92815 1.21401 0.99790 0.97185 0.96328 1.21327 0.99310 0.93842 1.00122 1.21236 0.99396 1.00546 0.91124 1.19686 1.02665 0.94656 0.94999 1.20163 0.85014 0.96610 0.93451 1.45976 1.24049 1.31940 1.32679 1.18171 0.83846 0.82813 0.79881 1.90751 1.65145 1.27038 1.61119 1.20763 0.95456 0.93212 0.96381 1.22357 0.96307 1.00879 0.94989 1.22016 0.92946 0.93739 0.99126 1.22703 1.02794 0.97540 0.94061 1.19487 0.88285 0.90661 0.90330 1.84752 1.66936 1.15949 1.62609 1.66902 1.12317 1.12727 1.31100 0.97208 0.96257 0.96057 0.94325 0.92501 0.92417 0.86695 0.86172 0.83454 0.83458 0.89153 0.91090 0.75153 0.82327 0.79225 0.80320 0.71909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.95 8.67 127.77 1.11 10.06 16 2 N -0.61 -30.55 1.74 -731.29 -1.27 -31.83 16 3 C -0.26 -13.92 9.01 84.03 0.76 -13.16 16 4 H 0.06 3.45 7.82 -2.91 -0.02 3.42 16 5 C -0.04 -2.35 5.13 84.86 0.44 -1.92 16 6 N -0.93 -53.75 10.62 21.65 0.23 -53.52 16 7 Si 0.96 44.80 29.57 68.60 2.03 46.82 16 8 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 9 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 C 0.19 7.87 5.05 85.63 0.43 8.30 16 12 C -0.09 -3.50 5.87 -19.87 -0.12 -3.61 16 13 C -0.12 -4.93 9.16 22.27 0.20 -4.73 16 14 C -0.13 -4.54 10.05 22.27 0.22 -4.32 16 15 C -0.13 -3.62 10.05 22.27 0.22 -3.39 16 16 C -0.10 -2.85 9.67 22.27 0.22 -2.63 16 17 C -0.12 -3.74 5.25 -19.87 -0.10 -3.84 16 18 C 0.17 4.83 5.15 85.63 0.44 5.27 16 19 N -0.70 -20.41 5.18 -469.40 -2.43 -22.84 16 20 C 0.57 16.88 7.81 86.88 0.68 17.56 16 21 O -0.56 -18.65 16.32 -3.77 -0.06 -18.71 16 22 C 0.08 2.04 6.75 41.85 0.28 2.33 16 23 C -0.12 -2.34 9.63 22.61 0.22 -2.13 16 24 C -0.05 -0.63 10.16 22.42 0.23 -0.40 16 25 C -0.15 -2.00 10.05 22.54 0.23 -1.77 16 26 C 0.29 6.20 7.74 84.92 0.66 6.86 16 27 O -0.49 -9.57 13.56 -89.90 -1.22 -10.79 16 28 N -0.51 -13.55 9.57 -298.19 -2.85 -16.40 16 29 H 0.01 0.53 6.97 -2.39 -0.02 0.51 16 30 H 0.02 1.02 7.27 -2.39 -0.02 1.01 16 31 H 0.02 0.93 7.88 -2.39 -0.02 0.91 16 32 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.06 2.40 7.71 -2.38 -0.02 2.38 16 34 H 0.06 2.28 7.09 -2.38 -0.02 2.27 16 35 H 0.12 6.06 5.94 -2.91 -0.02 6.04 16 36 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 37 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 38 H 0.15 3.03 8.01 -2.91 -0.02 3.01 16 39 H 0.09 2.26 7.96 -2.39 -0.02 2.24 16 40 H 0.07 2.14 7.10 -2.39 -0.02 2.13 16 41 H 0.41 12.64 7.79 -92.71 -0.72 11.92 16 42 H 0.16 2.72 7.63 -2.91 -0.02 2.70 16 43 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 44 H 0.18 1.15 8.06 -2.91 -0.02 1.12 16 45 H 0.42 4.65 9.06 -74.06 -0.67 3.98 16 Total: -1.00 -71.72 381.84 0.18 -71.53 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.35 Total: 27.26 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 6.11 Total: 8.47 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -6.33 Total: -124.59 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.28 Total: -29.50 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -71.72 0.18 -71.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501660912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.045 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds