Wall clock time and date at job start Sat Apr 11 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28826 * 125.15076 * 2 1 4 4 C 1.30118 * 110.78673 * 180.20215 * 3 2 1 5 5 C 1.40085 * 107.72792 * 359.85028 * 4 3 2 6 6 C 1.37010 * 125.15377 * 179.80139 * 2 1 3 7 7 C 1.47125 * 127.04626 * 359.97438 * 6 2 1 8 8 O 1.21643 * 119.99917 * 99.59840 * 7 6 2 9 9 N 1.34774 * 120.00167 * 279.60178 * 7 6 2 10 10 C 1.39892 * 120.00424 * 175.50528 * 9 7 6 11 11 C 1.38944 * 120.00009 * 35.13649 * 10 9 7 12 12 C 1.37996 * 119.99494 * 179.97438 * 11 10 9 13 13 C 1.38920 * 120.00240 * 0.02562 * 12 11 10 14 14 O 1.35773 * 119.99413 * 179.97438 * 13 12 11 15 15 C 1.34812 * 117.00455 * 5.34927 * 14 13 12 16 16 H 1.08005 * 119.99982 * 354.96549 * 15 14 13 17 17 C 1.38629 * 120.00431 * 174.95951 * 15 14 13 18 18 N 1.31573 * 120.00150 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99892 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47315 * 89.99826 * 19 17 15 21 21 H 1.48503 * 109.47115 * 209.99873 * 19 17 15 22 22 H 1.48499 * 109.47049 * 329.99633 * 19 17 15 23 23 C 1.38910 * 120.00570 * 0.23801 * 13 12 11 24 24 C 1.37990 * 120.00614 * 359.48320 * 23 13 12 25 25 C 1.50378 * 124.20618 * 179.70317 * 5 4 3 26 26 C 1.53492 * 108.12359 * 343.84623 * 25 5 4 27 27 C 1.53031 * 109.68588 * 50.01562 * 26 25 5 28 28 C 1.50865 * 129.05327 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.47217 * 275.17760 * 1 2 3 30 30 H 1.08997 * 109.47117 * 35.18043 * 1 2 3 31 31 H 1.09005 * 109.46887 * 155.17893 * 1 2 3 32 32 H 0.97005 * 119.99340 * 355.49809 * 9 7 6 33 33 H 1.07998 * 120.00504 * 359.96074 * 11 10 9 34 34 H 1.07999 * 120.00409 * 180.02562 * 12 11 10 35 35 H 0.97001 * 120.00148 * 180.02562 * 18 17 15 36 36 H 1.08004 * 119.99541 * 179.74675 * 23 13 12 37 37 H 1.08003 * 120.00505 * 180.23482 * 24 23 13 38 38 H 1.09001 * 109.73218 * 103.50499 * 25 5 4 39 39 H 1.09007 * 109.73306 * 224.18655 * 25 5 4 40 40 H 1.08993 * 109.43789 * 289.94729 * 26 25 5 41 41 H 1.09001 * 109.43798 * 170.08051 * 26 25 5 42 42 H 1.09004 * 109.40338 * 168.43518 * 27 26 25 43 43 H 1.08993 * 109.33775 * 48.64207 * 27 26 25 44 44 H 1.09002 * 109.72198 * 282.78613 * 28 4 3 45 45 H 1.08996 * 109.72447 * 43.39522 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2066 1.0533 0.0000 4 6 3.4671 0.7305 -0.0043 5 6 3.5493 -0.6679 -0.0039 6 6 2.2538 -1.1202 0.0039 7 6 1.8041 -2.5210 0.0093 8 8 1.7850 -3.1577 -1.0271 9 7 1.4131 -3.0989 1.1624 10 6 0.8970 -4.3991 1.1535 11 6 1.3988 -5.3396 0.2623 12 6 0.8900 -6.6223 0.2540 13 6 -0.1242 -6.9730 1.1362 14 8 -0.6251 -8.2350 1.1275 15 6 -0.0209 -9.1278 0.3180 16 1 0.7687 -8.8072 -0.3456 17 6 -0.4129 -10.4574 0.3373 18 7 0.1772 -11.3288 -0.4524 19 14 -1.7789 -11.0118 1.4845 20 1 -3.0864 -10.8944 0.7905 21 1 -1.5521 -12.4259 1.8772 22 1 -1.7840 -10.1559 2.6980 23 6 -0.6297 -6.0313 2.0234 24 6 -0.1172 -4.7501 2.0359 25 6 4.8404 -1.4389 -0.0145 26 6 5.9651 -0.4809 -0.4309 27 6 5.8952 0.7939 0.4127 28 6 4.6786 1.6297 -0.0054 29 1 -0.3634 0.0927 1.0235 30 1 -0.3633 0.8399 -0.5921 31 1 -0.3633 -0.9328 -0.4314 32 1 1.4897 -2.6131 1.9985 33 1 2.1868 -5.0668 -0.4239 34 1 1.2802 -7.3536 -0.4383 35 1 -0.0974 -12.2590 -0.4392 36 1 -1.4211 -6.3030 2.7063 37 1 -0.5076 -4.0190 2.7283 38 1 5.0422 -1.8324 0.9817 39 1 4.7730 -2.2598 -0.7284 40 1 5.8524 -0.2253 -1.4845 41 1 6.9295 -0.9651 -0.2771 42 1 6.8038 1.3773 0.2633 43 1 5.8061 0.5257 1.4653 44 1 4.8358 2.0337 -1.0055 45 1 4.5316 2.4458 0.7019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645611281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:13 Heat of formation + Delta-G solvation = 19.789526 kcal Electronic energy + Delta-G solvation = -28678.868356 eV Core-core repulsion = 24662.814150 eV Total energy + Delta-G solvation = -4016.054206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.75141 -41.54034 -40.44267 -38.30810 -37.98463 -35.59822 -34.40927 -33.76033 -32.98511 -31.94676 -30.64504 -29.53419 -28.21823 -27.20210 -24.94821 -24.34105 -23.89568 -23.02057 -22.48627 -21.01343 -20.17109 -19.92137 -19.31903 -18.68740 -18.32974 -17.26560 -17.05372 -16.57095 -16.33172 -15.93292 -15.79253 -15.69358 -15.48072 -15.35965 -14.87357 -14.72860 -14.48545 -14.25934 -14.17691 -14.11448 -13.84210 -13.71330 -13.49936 -13.45647 -13.33081 -12.76958 -12.72543 -12.51820 -12.28159 -12.03970 -11.74289 -11.65892 -11.55935 -11.42437 -11.18935 -11.05797 -10.72623 -10.12754 -9.91170 -9.63130 -8.78075 -8.50286 -6.23223 0.32084 0.46462 0.51835 1.00878 1.33090 1.37642 1.53232 1.54309 1.60924 2.00285 2.28411 2.72698 2.99179 3.13737 3.25593 3.38013 3.89012 4.00638 4.02437 4.04508 4.06080 4.11041 4.23584 4.31182 4.41084 4.49564 4.51211 4.54466 4.60428 4.61295 4.66065 4.68942 4.96106 4.98291 5.05944 5.15038 5.18752 5.22980 5.29132 5.31019 5.38871 5.49233 5.53469 5.55662 5.72289 5.74305 5.85646 6.12227 6.23919 6.83036 6.88063 6.99007 7.54465 8.61346 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.002256 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.651034 B =12410.524533 C =13143.436756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.283 5.283 3 N -0.287 5.287 4 C 0.027 3.973 5 C -0.159 4.159 6 C -0.039 4.039 7 C 0.596 3.404 8 O -0.546 6.546 9 N -0.630 5.630 10 C 0.063 3.937 11 C -0.077 4.077 12 C -0.223 4.223 13 C 0.118 3.882 14 O -0.237 6.237 15 C -0.401 4.401 16 H 0.077 0.923 17 C 0.008 3.992 18 N -0.924 5.924 19 Si 0.975 3.025 20 H -0.266 1.266 21 H -0.269 1.269 22 H -0.256 1.256 23 C -0.166 4.166 24 C -0.070 4.070 25 C -0.053 4.053 26 C -0.114 4.114 27 C -0.110 4.110 28 C -0.031 4.031 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.426 0.574 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.285 0.715 36 H 0.147 0.853 37 H 0.175 0.825 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.205 28.555 7.354 30.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.072 5.072 3 N -0.118 5.118 4 C -0.132 4.132 5 C -0.170 4.170 6 C -0.166 4.166 7 C 0.381 3.619 8 O -0.421 6.421 9 N -0.276 5.276 10 C -0.030 4.030 11 C -0.098 4.098 12 C -0.243 4.243 13 C 0.068 3.932 14 O -0.144 6.144 15 C -0.477 4.477 16 H 0.094 0.906 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.797 3.203 20 H -0.191 1.191 21 H -0.194 1.194 22 H -0.180 1.180 23 C -0.185 4.185 24 C -0.090 4.090 25 C -0.092 4.092 26 C -0.152 4.152 27 C -0.148 4.148 28 C -0.070 4.070 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.266 0.734 33 H 0.138 0.862 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.165 0.835 37 H 0.192 0.808 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.090 28.740 6.657 29.936 hybrid contribution 0.129 -1.527 -0.222 1.548 sum 5.218 27.213 6.435 28.446 Atomic orbital electron populations 1.22454 0.71278 1.05753 1.06445 1.45997 1.08189 1.00681 1.52306 1.72800 1.04256 1.13400 1.21327 1.22422 0.92586 0.93415 1.04812 1.20670 0.93366 0.94928 1.08003 1.20667 0.92535 0.88052 1.15330 1.17191 0.76608 0.84705 0.83438 1.90876 1.52798 1.64635 1.33781 1.43001 1.61153 1.13420 1.10007 1.17394 0.99291 0.84101 1.02232 1.20899 0.99081 0.91123 0.98651 1.21111 1.02128 0.97590 1.03435 1.19709 0.93160 0.85433 0.94888 1.83504 1.53476 1.16978 1.60485 1.20680 1.19518 0.89119 1.18382 0.90570 1.25355 1.00704 0.94085 0.98897 1.69750 1.43097 1.04234 1.39402 0.85150 0.78099 0.77760 0.79305 1.19098 1.19388 1.17997 1.20405 1.04576 0.92344 1.01199 1.20829 0.93393 0.95745 0.98999 1.20129 0.89933 0.96974 1.02120 1.21583 0.97717 0.95766 1.00107 1.21570 0.97548 0.95668 1.00032 1.20181 0.87686 0.95741 1.03408 0.86986 0.87058 0.89467 0.73443 0.86178 0.87543 0.90530 0.83487 0.80776 0.89740 0.92498 0.92134 0.89648 0.88591 0.91332 0.89463 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 11.22 127.77 1.43 2.53 16 2 N -0.28 -6.04 3.77 -356.73 -1.34 -7.38 16 3 N -0.29 -6.47 11.89 -47.46 -0.56 -7.03 16 4 C 0.03 0.56 7.13 43.31 0.31 0.87 16 5 C -0.16 -3.60 6.02 -19.76 -0.12 -3.72 16 6 C -0.04 -0.95 6.70 40.43 0.27 -0.68 16 7 C 0.60 16.71 6.80 86.58 0.59 17.30 16 8 O -0.55 -20.43 14.54 -4.17 -0.06 -20.49 16 9 N -0.63 -14.77 5.33 -306.58 -1.63 -16.40 16 10 C 0.06 1.92 6.30 38.19 0.24 2.16 16 11 C -0.08 -3.04 8.69 22.38 0.19 -2.85 16 12 C -0.22 -10.26 9.16 22.38 0.20 -10.05 16 13 C 0.12 5.39 6.65 22.59 0.15 5.54 16 14 O -0.24 -12.64 8.58 -22.81 -0.20 -12.84 16 15 C -0.40 -23.73 9.94 67.91 0.68 -23.05 16 16 H 0.08 4.81 5.43 -2.91 -0.02 4.80 16 17 C 0.01 0.46 5.49 84.82 0.47 0.92 16 18 N -0.92 -55.71 13.96 21.61 0.30 -55.41 16 19 Si 0.98 44.84 28.62 68.60 1.96 46.80 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 23 C -0.17 -5.73 9.98 22.37 0.22 -5.50 16 24 C -0.07 -1.87 9.96 22.38 0.22 -1.65 16 25 C -0.05 -1.03 6.22 29.91 0.19 -0.85 16 26 C -0.11 -1.55 5.88 30.77 0.18 -1.37 16 27 C -0.11 -1.13 5.85 30.74 0.18 -0.95 16 28 C -0.03 -0.41 6.32 30.04 0.19 -0.22 16 29 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.32 7.67 -2.38 -0.02 1.30 16 32 H 0.43 6.71 8.81 -92.70 -0.82 5.90 16 33 H 0.12 4.89 6.22 -2.91 -0.02 4.87 16 34 H 0.11 5.49 5.63 -2.91 -0.02 5.48 16 35 H 0.29 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.06 0.89 8.11 -2.39 -0.02 0.87 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.07 0.71 8.10 -2.39 -0.02 0.69 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -77.07 375.84 4.29 -72.78 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.22 Total: 21.54 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 5.60 Total: -21.57 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -3.24 Total: -86.23 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.26 Total: -33.33 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.96 Total: 46.80 kcal Total: -77.07 4.29 -72.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645611281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.574 kcal (2) G-P(sol) polarization free energy of solvation -77.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds