Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40296 * 126.09299 * 2 1 4 4 C 1.31069 * 108.27294 * 179.66563 * 3 2 1 5 5 C 1.39299 * 108.07631 * 0.02562 * 4 3 2 6 6 C 1.34325 * 126.09164 * 179.69163 * 2 1 3 7 7 C 1.50827 * 128.03537 * 0.46368 * 6 2 1 8 8 C 1.53360 * 108.38415 * 163.36561 * 7 6 2 9 9 H 1.08996 * 109.46646 * 289.92992 * 8 7 6 10 10 C 1.50701 * 109.46207 * 169.93857 * 8 7 6 11 11 O 1.21289 * 119.99840 * 359.97427 * 10 8 7 12 12 N 1.34775 * 120.00111 * 179.97438 * 10 8 7 13 13 C 1.39996 * 119.99796 * 175.48439 * 12 10 8 14 14 C 1.38916 * 119.99951 * 214.85051 * 13 12 10 15 15 C 1.38004 * 119.99593 * 179.77153 * 14 13 12 16 16 C 1.38915 * 120.00035 * 0.51005 * 15 14 13 17 17 O 1.35774 * 119.99560 * 179.76971 * 16 15 14 18 18 C 1.34818 * 116.99865 * 185.32900 * 17 16 15 19 19 H 1.08000 * 119.99556 * 354.95887 * 18 17 16 20 20 C 1.38632 * 120.00234 * 174.96428 * 18 17 16 21 21 N 1.31572 * 119.99903 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99885 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47180 * 89.99578 * 22 20 18 24 24 H 1.48501 * 109.47307 * 209.99633 * 22 20 18 25 25 H 1.48499 * 109.47406 * 329.99600 * 22 20 18 26 26 C 1.38908 * 119.99993 * 359.74557 * 16 15 14 27 27 C 1.37994 * 120.00510 * 359.97438 * 26 16 15 28 28 C 1.53113 * 109.50761 * 49.93547 * 8 7 6 29 29 C 1.50836 * 127.89568 * 180.10354 * 5 4 3 30 30 H 1.09000 * 109.47080 * 90.02701 * 1 2 3 31 31 H 1.08995 * 109.46861 * 210.02494 * 1 2 3 32 32 H 1.09001 * 109.46884 * 330.02442 * 1 2 3 33 33 H 1.07996 * 125.96224 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.68370 * 43.64215 * 7 6 2 35 35 H 1.08998 * 109.70855 * 283.10666 * 7 6 2 36 36 H 0.97000 * 119.99925 * 355.49481 * 12 10 8 37 37 H 1.07999 * 120.00709 * 0.03368 * 14 13 12 38 38 H 1.08001 * 120.00214 * 180.25677 * 15 14 13 39 39 H 0.96997 * 120.00061 * 180.02562 * 21 20 18 40 40 H 1.08001 * 119.99433 * 180.02562 * 26 16 15 41 41 H 1.08001 * 120.00101 * 180.02562 * 27 26 16 42 42 H 1.09000 * 109.46693 * 169.70814 * 28 8 7 43 43 H 1.09005 * 109.46038 * 49.71954 * 28 8 7 44 44 H 1.08999 * 109.68286 * 283.13158 * 29 5 4 45 45 H 1.09000 * 109.68705 * 43.68975 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5393 0.7326 0.0073 5 6 3.5455 -0.6604 0.0115 6 6 2.2563 -1.0854 0.0058 7 6 1.8438 -2.5362 0.0040 8 6 3.0555 -3.3831 -0.4041 9 1 3.2754 -3.2178 -1.4588 10 6 2.7484 -4.8409 -0.1775 11 8 1.6692 -5.1714 0.2665 12 7 3.6730 -5.7775 -0.4681 13 6 3.4246 -7.1225 -0.1699 14 6 4.4665 -7.9488 0.2319 15 6 4.2207 -9.2736 0.5304 16 6 2.9333 -9.7834 0.4189 17 8 2.6924 -11.0879 0.7081 18 6 1.4465 -11.5467 0.4741 19 1 0.6722 -10.8663 0.1517 20 6 1.1591 -12.8918 0.6476 21 7 2.1025 -13.7207 1.0400 22 14 -0.5674 -13.5273 0.3241 23 1 -0.6845 -13.9406 -1.0974 24 1 -0.8383 -14.6935 1.2026 25 1 -1.5520 -12.4530 0.6100 26 6 1.8924 -8.9585 0.0119 27 6 2.1370 -7.6323 -0.2810 28 6 4.2683 -2.9801 0.4391 29 6 4.7399 -1.5815 0.0222 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 4.4105 1.3707 0.0096 34 1 1.0337 -2.6867 -0.7095 35 1 1.5129 -2.8255 1.0015 36 1 4.5106 -5.5195 -0.8838 37 1 5.4681 -7.5535 0.3148 38 1 5.0299 -9.9150 0.8468 39 1 1.9016 -14.6619 1.1610 40 1 0.8915 -9.3548 -0.0744 41 1 1.3276 -6.9909 -0.5970 42 1 5.0742 -3.6970 0.2821 43 1 3.9907 -2.9706 1.4932 44 1 5.1796 -1.6241 -0.9742 45 1 5.4791 -1.2160 0.7350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645755350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = 38.219037 kcal Electronic energy + Delta-G solvation = -28257.595823 eV Core-core repulsion = 24242.340780 eV Total energy + Delta-G solvation = -4015.255043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.86464 -40.30243 -38.78572 -36.91994 -36.12832 -34.03726 -33.92362 -32.20209 -30.61273 -30.25974 -30.11857 -27.87866 -26.89307 -25.39184 -24.34485 -22.85469 -22.28224 -21.41014 -21.15249 -19.97626 -19.01307 -18.15417 -17.69418 -17.15534 -16.56944 -16.33753 -15.84383 -15.29731 -14.80494 -14.53909 -14.49775 -14.30187 -14.13636 -13.76630 -13.64476 -13.60612 -13.51186 -13.25458 -13.05665 -12.88806 -12.72267 -12.58134 -12.14281 -11.88323 -11.76233 -11.60859 -11.51858 -11.21922 -11.07991 -11.01471 -10.78414 -10.75350 -10.44383 -9.71251 -9.68844 -9.52416 -9.18676 -8.71170 -8.47945 -8.22569 -6.96148 -6.45659 -4.03264 1.58364 2.04584 2.18833 2.19974 2.52092 2.76847 3.13100 3.14296 3.18913 3.23071 3.96812 4.15679 4.23104 4.36558 4.47259 4.57901 4.68763 4.79100 4.81770 4.97382 5.02633 5.03237 5.08712 5.09192 5.23816 5.24800 5.32063 5.53941 5.59395 5.62935 5.65579 5.73136 5.74694 5.91375 6.01467 6.12018 6.16004 6.31878 6.39920 6.70590 6.73438 6.83529 6.98621 7.07379 7.28711 7.42498 7.43593 7.64755 7.76402 7.99456 8.31270 9.00134 9.69346 10.72213 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023336 B = 0.002010 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.560903 B =13929.123768 C =14995.003665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.367 5.367 3 N -0.304 5.304 4 C 0.055 3.945 5 C -0.246 4.246 6 C 0.091 3.909 7 C -0.037 4.037 8 C -0.097 4.097 9 H 0.103 0.897 10 C 0.511 3.489 11 O -0.527 6.527 12 N -0.657 5.657 13 C 0.032 3.968 14 C -0.092 4.092 15 C -0.178 4.178 16 C 0.147 3.853 17 O -0.176 6.176 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.221 4.221 27 C -0.064 4.064 28 C -0.112 4.112 29 C -0.036 4.036 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.182 0.818 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.402 0.598 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.270 0.730 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 25.229 -4.059 25.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.148 5.148 3 N -0.125 5.125 4 C -0.130 4.130 5 C -0.257 4.257 6 C -0.038 4.038 7 C -0.076 4.076 8 C -0.119 4.119 9 H 0.121 0.879 10 C 0.298 3.702 11 O -0.403 6.403 12 N -0.301 5.301 13 C -0.061 4.061 14 C -0.112 4.112 15 C -0.198 4.198 16 C 0.092 3.908 17 O -0.080 6.080 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.241 4.241 27 C -0.084 4.084 28 C -0.150 4.150 29 C -0.074 4.074 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.199 0.801 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.237 0.763 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.080 0.920 40 H 0.148 0.852 41 H 0.142 0.858 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.861 25.612 -3.583 25.929 hybrid contribution -0.022 -0.756 -0.389 0.851 sum 1.839 24.856 -3.973 25.239 Atomic orbital electron populations 1.21896 0.74240 1.04682 1.03537 1.48191 1.06518 1.03410 1.56697 1.77520 1.01581 1.07562 1.25867 1.23559 0.95209 0.94439 0.99795 1.19903 0.94110 0.93841 1.17881 1.20898 0.91099 0.90585 1.01195 1.20083 0.97418 0.85842 1.04282 1.21260 0.96733 0.91219 1.02647 0.87913 1.20476 0.84589 0.87338 0.77825 1.90711 1.23211 1.82194 1.44158 1.43182 1.20412 1.05573 1.60962 1.17255 0.94941 0.82839 1.11015 1.20355 0.97285 0.93237 1.00321 1.20000 0.95022 0.95126 1.09684 1.19421 0.93015 0.85789 0.92528 1.83974 1.32743 1.19239 1.72004 1.21333 0.84704 0.93248 1.47373 0.89025 1.25287 0.99866 0.94808 0.96588 1.70043 1.32734 1.04239 1.42705 0.85711 0.80350 0.78819 0.78573 1.19869 1.20260 1.19161 1.21107 1.00056 0.93685 1.09283 1.20838 0.95445 0.94370 0.97712 1.21635 0.96023 0.97109 1.00194 1.19961 0.93997 0.91836 1.01633 0.90610 0.89236 0.89216 0.80113 0.89594 0.88470 0.76328 0.86710 0.86058 0.92022 0.85239 0.85762 0.90574 0.90823 0.91018 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 11.32 59.85 0.68 1.32 16 2 N -0.37 -3.70 4.00 -63.88 -0.26 -3.95 16 3 N -0.30 -3.45 12.59 30.54 0.38 -3.06 16 4 C 0.05 0.51 12.00 -17.48 -0.21 0.30 16 5 C -0.25 -2.25 5.91 -105.05 -0.62 -2.87 16 6 C 0.09 0.89 6.73 -82.33 -0.55 0.34 16 7 C -0.04 -0.34 4.56 -27.63 -0.13 -0.47 16 8 C -0.10 -0.84 2.49 -91.53 -0.23 -1.07 16 9 H 0.10 0.74 8.11 -51.93 -0.42 0.32 16 10 C 0.51 6.46 7.00 -10.99 -0.08 6.39 16 11 O -0.53 -8.81 13.26 5.55 0.07 -8.74 16 12 N -0.66 -8.16 5.10 -9.82 -0.05 -8.21 16 13 C 0.03 0.54 6.30 -83.62 -0.53 0.01 16 14 C -0.09 -1.54 9.96 -39.42 -0.39 -1.93 16 15 C -0.18 -3.63 9.99 -39.42 -0.39 -4.03 16 16 C 0.15 3.51 6.65 -39.08 -0.26 3.25 16 17 O -0.18 -4.99 9.76 0.01 0.00 -4.99 16 18 C -0.39 -10.89 9.48 30.88 0.29 -10.60 16 19 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.15 13.67 55.48 0.76 -24.39 16 22 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 C -0.22 -4.92 9.16 -39.42 -0.36 -5.28 16 27 C -0.06 -1.25 8.69 -39.42 -0.34 -1.59 16 28 C -0.11 -0.82 5.18 -26.48 -0.14 -0.96 16 29 C -0.04 -0.24 6.28 -27.62 -0.17 -0.41 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.47 7.89 -51.93 -0.41 0.06 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.00 7.79 -51.93 -0.40 0.60 16 36 H 0.40 3.48 8.31 -40.82 -0.34 3.14 16 37 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.13 2.91 5.63 -52.49 -0.30 2.61 16 41 H 0.12 2.39 6.22 -52.49 -0.33 2.07 16 42 H 0.08 0.45 7.40 -51.93 -0.38 0.07 16 43 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -35.04 374.30 -7.79 -42.83 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.79 Total: 5.98 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -3.53 Total: -16.63 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.84 Total: -39.62 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.07 Total: -13.73 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.04 -7.79 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645755350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.053 kcal (2) G-P(sol) polarization free energy of solvation -35.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds