Wall clock time and date at job start Sat Apr 11 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46957 * 2 1 4 4 C 1.34899 * 120.03423 * 89.99781 * 3 2 1 5 5 N 1.30543 * 121.62729 * 179.70119 * 4 3 2 6 6 C 1.33555 * 121.59178 * 0.27179 * 5 4 3 7 7 C 1.36648 * 119.85400 * 0.02562 * 6 5 4 8 8 N 1.40201 * 120.76057 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99928 * 120.59262 * 8 7 6 10 10 O 1.21299 * 120.00156 * 4.67230 * 9 8 7 11 11 C 1.50705 * 119.99647 * 184.67345 * 9 8 7 12 12 C 1.52998 * 109.46952 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.47467 * 305.00267 * 12 11 9 14 14 C 1.50706 * 109.47121 * 65.00321 * 12 11 9 15 15 H 1.08002 * 119.99912 * 34.93878 * 14 12 11 16 16 C 1.37875 * 120.00044 * 214.93949 * 14 12 11 17 17 N 1.31510 * 119.99849 * 5.01471 * 16 14 12 18 18 Si 1.86804 * 119.99985 * 185.01360 * 16 14 12 19 19 H 1.48492 * 109.46841 * 90.00176 * 18 16 14 20 20 H 1.48500 * 109.47112 * 209.99986 * 18 16 14 21 21 H 1.48500 * 109.46835 * 330.00009 * 18 16 14 22 22 C 1.50703 * 109.47188 * 184.99898 * 12 11 9 23 23 C 1.38232 * 119.99967 * 294.80097 * 22 12 11 24 24 C 1.38238 * 119.99738 * 179.78528 * 23 22 12 25 25 C 1.38236 * 120.00089 * 0.44188 * 24 23 22 26 26 C 1.38237 * 119.99620 * 359.81094 * 25 24 23 27 27 C 1.38230 * 120.00570 * 359.97438 * 26 25 24 28 28 C 1.35043 * 120.02817 * 270.25052 * 3 2 1 29 29 O 1.21981 * 120.74632 * 0.02562 * 28 3 2 30 30 H 1.08994 * 109.47160 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47210 * 300.00746 * 1 2 3 32 32 H 1.09005 * 109.46984 * 60.00357 * 1 2 3 33 33 H 1.08996 * 109.47700 * 239.99358 * 2 1 3 34 34 H 1.09002 * 109.46696 * 119.99203 * 2 1 3 35 35 H 1.08007 * 119.18150 * 359.97438 * 4 3 2 36 36 H 1.07993 * 120.07189 * 180.02562 * 6 5 4 37 37 H 0.96997 * 119.99503 * 300.59362 * 8 7 6 38 38 H 1.08995 * 109.47166 * 299.99773 * 11 9 8 39 39 H 1.08997 * 109.47055 * 60.00274 * 11 9 8 40 40 H 0.97003 * 119.99907 * 180.02562 * 17 16 14 41 41 H 1.08001 * 120.00163 * 359.97438 * 23 22 12 42 42 H 1.08002 * 119.99981 * 180.27664 * 24 23 22 43 43 H 1.08000 * 120.00199 * 179.83485 * 25 24 23 44 44 H 1.08003 * 119.99861 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.00312 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2433 2.0178 1.1679 5 7 2.6837 3.2462 1.2042 6 6 2.9282 3.9351 0.0864 7 6 2.7162 3.3529 -1.1315 8 7 2.9660 4.0588 -2.3169 9 6 3.8617 3.5865 -3.2064 10 8 4.3889 2.5097 -3.0227 11 6 4.2081 4.3964 -4.4292 12 6 5.2412 3.6397 -5.2662 13 1 6.1044 3.3977 -4.6463 14 6 4.6276 2.3673 -5.7915 15 1 3.5837 2.3451 -6.0675 16 6 5.3989 1.2317 -5.9196 17 7 6.6425 1.2298 -5.4920 18 14 4.6772 -0.3043 -6.7003 19 1 4.9191 -0.2753 -8.1651 20 1 5.3231 -1.5069 -6.1157 21 1 3.2159 -0.3516 -6.4407 22 6 5.6790 4.5009 -6.4228 23 6 4.7736 4.8467 -7.4086 24 6 5.1741 5.6404 -8.4672 25 6 6.4821 6.0808 -8.5448 26 6 7.3887 5.7306 -7.5617 27 6 6.9872 4.9406 -6.5008 28 6 2.2387 2.0201 -1.1692 29 8 2.0354 1.4603 -2.2337 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8935 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.0586 1.4968 2.0957 36 1 3.2926 4.9500 0.1451 37 1 2.4942 4.8870 -2.4967 38 1 3.3089 4.5608 -5.0228 39 1 4.6222 5.3572 -4.1233 40 1 7.1853 0.4309 -5.5825 41 1 3.7527 4.4992 -7.3501 42 1 4.4657 5.9142 -9.2350 43 1 6.7957 6.6986 -9.3732 44 1 8.4106 6.0750 -7.6221 45 1 7.6957 4.6668 -5.7330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646194833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:27 Heat of formation + Delta-G solvation = 4.115261 kcal Electronic energy + Delta-G solvation = -29552.693514 eV Core-core repulsion = 25535.959621 eV Total energy + Delta-G solvation = -4016.733893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.76656 -39.06932 -38.20313 -37.39892 -35.99741 -34.11936 -33.66643 -31.41026 -31.02613 -30.02403 -29.94048 -28.53736 -25.73285 -25.08842 -24.00892 -22.76032 -22.34866 -21.60654 -20.40538 -19.34005 -18.28896 -17.67695 -17.24230 -16.66477 -16.28958 -16.00492 -15.49414 -15.45787 -14.50779 -14.43977 -14.27673 -14.14056 -13.91555 -13.78904 -13.46733 -13.11858 -13.01004 -12.81649 -12.55635 -12.44830 -12.25989 -11.96192 -11.79773 -11.59115 -11.50227 -10.81512 -10.69765 -10.56563 -10.48445 -10.30665 -10.23921 -10.07606 -10.01117 -9.37953 -9.12450 -9.01900 -8.78811 -8.27412 -8.04174 -7.88195 -7.60819 -5.85256 -3.83462 0.62397 1.99326 2.29204 2.34419 2.40734 3.43218 3.47959 3.49413 3.54802 3.61511 3.78022 4.06121 4.45423 4.55944 4.59820 4.74651 4.76091 4.81228 5.06009 5.31000 5.46403 5.50734 5.59886 5.66742 5.67190 5.74265 5.82930 5.84278 5.86930 6.12026 6.24171 6.27911 6.30519 6.42080 6.50222 6.55136 6.82935 6.92080 7.03893 7.05983 7.31612 7.47693 7.54247 7.76040 7.93688 7.97630 8.00191 8.04701 8.11183 8.45583 9.13435 9.16757 9.77828 11.24947 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012991 B = 0.003525 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.795054 B = 7941.242835 C = 9291.317031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.085 3.915 3 N -0.521 5.521 4 C 0.355 3.645 5 N -0.531 5.531 6 C 0.110 3.890 7 C 0.011 3.989 8 N -0.681 5.681 9 C 0.512 3.488 10 O -0.462 6.462 11 C -0.116 4.116 12 C 0.076 3.924 13 H 0.077 0.923 14 C -0.489 4.489 15 H 0.050 0.950 16 C 0.080 3.920 17 N -0.881 5.881 18 Si 0.884 3.116 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.274 1.274 22 C -0.024 4.024 23 C -0.113 4.113 24 C -0.132 4.132 25 C -0.155 4.155 26 C -0.128 4.128 27 C -0.123 4.123 28 C 0.511 3.489 29 O -0.492 6.492 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.199 0.801 36 H 0.164 0.836 37 H 0.403 0.597 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.257 0.743 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.733 5.739 12.714 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.038 4.038 3 N -0.242 5.242 4 C 0.071 3.929 5 N -0.253 5.253 6 C -0.030 4.030 7 C -0.090 4.090 8 N -0.334 5.334 9 C 0.299 3.701 10 O -0.329 6.329 11 C -0.157 4.157 12 C 0.057 3.943 13 H 0.095 0.905 14 C -0.526 4.526 15 H 0.068 0.932 16 C -0.123 4.123 17 N -0.518 5.518 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.199 1.199 22 C -0.025 4.025 23 C -0.131 4.131 24 C -0.150 4.150 25 C -0.173 4.173 26 C -0.146 4.146 27 C -0.141 4.141 28 C 0.305 3.695 29 O -0.365 6.365 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.216 0.784 36 H 0.181 0.819 37 H 0.239 0.761 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.132 0.868 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.053 4.922 12.672 16.333 hybrid contribution -0.716 -0.964 -1.347 1.805 sum -9.769 3.959 11.324 15.471 Atomic orbital electron populations 1.22113 0.94115 1.03320 1.02859 1.21991 0.95748 0.80494 1.05520 1.46971 1.53902 1.15513 1.07778 1.24840 0.88750 0.89392 0.89965 1.68280 1.20939 1.06249 1.29816 1.22689 0.93457 1.00649 0.86210 1.19188 1.07475 0.93458 0.88900 1.43554 1.44459 1.26659 1.18741 1.21111 0.78109 0.87215 0.83691 1.90800 1.49332 1.19513 1.73252 1.21758 1.02136 0.97800 0.93977 1.17875 0.95463 0.91079 0.89848 0.90495 1.20661 0.95427 0.93550 1.42966 0.93178 1.24774 0.94862 0.98095 0.94591 1.69895 1.07781 1.28717 1.45443 0.86712 0.79592 0.83369 0.79063 1.20936 1.21474 1.19919 1.20788 0.92577 0.91290 0.97795 1.20979 1.00076 0.97766 0.94306 1.20994 0.95853 0.99710 0.98437 1.20803 0.94177 1.03001 0.99351 1.20981 0.98487 0.99712 0.95440 1.21111 0.96531 0.97980 0.98458 1.17596 0.80409 0.87896 0.83569 1.91049 1.50501 1.67380 1.27538 0.90468 0.92128 0.91692 0.87860 0.88660 0.78418 0.81857 0.76117 0.90450 0.91479 0.93298 0.86764 0.87623 0.87774 0.87607 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.24 37.16 0.38 -0.95 16 2 C 0.08 0.82 6.09 -4.04 -0.02 0.80 16 3 N -0.52 -6.51 2.57 -120.88 -0.31 -6.82 16 4 C 0.36 3.39 11.47 -90.47 -1.04 2.35 16 5 N -0.53 -6.12 10.38 -14.35 -0.15 -6.27 16 6 C 0.11 1.40 11.13 -17.38 -0.19 1.20 16 7 C 0.01 0.18 5.79 -83.31 -0.48 -0.30 16 8 N -0.68 -11.28 5.22 -9.63 -0.05 -11.33 16 9 C 0.51 11.01 7.12 -10.98 -0.08 10.93 16 10 O -0.46 -12.48 13.56 -11.69 -0.16 -12.64 16 11 C -0.12 -2.34 4.97 -27.88 -0.14 -2.48 16 12 C 0.08 1.88 1.77 -92.92 -0.16 1.72 16 13 H 0.08 2.17 6.80 -51.93 -0.35 1.82 16 14 C -0.49 -13.76 6.29 -34.44 -0.22 -13.97 16 15 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 16 C 0.08 2.36 5.45 -17.82 -0.10 2.26 16 17 N -0.88 -26.92 12.77 55.43 0.71 -26.21 16 18 Si 0.88 23.45 29.54 -169.99 -5.02 18.43 16 19 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.65 7.11 56.52 0.40 -7.24 16 21 H -0.27 -7.34 7.11 56.52 0.40 -6.94 16 22 C -0.02 -0.54 4.77 -104.62 -0.50 -1.03 16 23 C -0.11 -2.33 8.88 -39.58 -0.35 -2.68 16 24 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 25 C -0.16 -2.72 10.05 -39.58 -0.40 -3.12 16 26 C -0.13 -2.38 10.05 -39.58 -0.40 -2.77 16 27 C -0.12 -2.61 9.67 -39.58 -0.38 -2.99 16 28 C 0.51 9.08 6.96 -14.84 -0.10 8.97 16 29 O -0.49 -11.14 15.18 -12.30 -0.19 -11.33 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 1.32 7.46 -51.93 -0.39 0.93 16 34 H 0.10 0.54 8.02 -51.93 -0.42 0.13 16 35 H 0.20 0.84 8.03 -52.48 -0.42 0.42 16 36 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.40 4.99 8.83 -40.82 -0.36 4.63 16 38 H 0.08 1.45 7.90 -51.93 -0.41 1.04 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.11 2.29 7.82 -52.49 -0.41 1.88 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 45 H 0.11 2.43 7.95 -52.49 -0.42 2.01 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -39.33 385.02 -10.05 -49.39 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.10 Total: 5.84 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -4.58 Total: -4.87 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.20 Total: -50.63 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.35 Total: -23.97 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.33 -10.05 -49.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646194833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.504 kcal (2) G-P(sol) polarization free energy of solvation -39.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds