Wall clock time and date at job start Sat Apr 11 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46957 * 2 1 4 4 C 1.34899 * 120.03423 * 89.99781 * 3 2 1 5 5 N 1.30543 * 121.62729 * 179.70119 * 4 3 2 6 6 C 1.33555 * 121.59178 * 0.27179 * 5 4 3 7 7 C 1.36648 * 119.85400 * 0.02562 * 6 5 4 8 8 N 1.40201 * 120.76057 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99928 * 120.59262 * 8 7 6 10 10 O 1.21299 * 120.00156 * 4.67230 * 9 8 7 11 11 C 1.50705 * 119.99647 * 184.67345 * 9 8 7 12 12 C 1.52998 * 109.46952 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.47467 * 305.00267 * 12 11 9 14 14 C 1.50706 * 109.47121 * 65.00321 * 12 11 9 15 15 H 1.08002 * 119.99912 * 34.93878 * 14 12 11 16 16 C 1.37875 * 120.00044 * 214.93949 * 14 12 11 17 17 N 1.31510 * 119.99849 * 5.01471 * 16 14 12 18 18 Si 1.86804 * 119.99985 * 185.01360 * 16 14 12 19 19 H 1.48492 * 109.46841 * 90.00176 * 18 16 14 20 20 H 1.48500 * 109.47112 * 209.99986 * 18 16 14 21 21 H 1.48500 * 109.46835 * 330.00009 * 18 16 14 22 22 C 1.50703 * 109.47188 * 184.99898 * 12 11 9 23 23 C 1.38232 * 119.99967 * 294.80097 * 22 12 11 24 24 C 1.38238 * 119.99738 * 179.78528 * 23 22 12 25 25 C 1.38236 * 120.00089 * 0.44188 * 24 23 22 26 26 C 1.38237 * 119.99620 * 359.81094 * 25 24 23 27 27 C 1.38230 * 120.00570 * 359.97438 * 26 25 24 28 28 C 1.35043 * 120.02817 * 270.25052 * 3 2 1 29 29 O 1.21981 * 120.74632 * 0.02562 * 28 3 2 30 30 H 1.08994 * 109.47160 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47210 * 300.00746 * 1 2 3 32 32 H 1.09005 * 109.46984 * 60.00357 * 1 2 3 33 33 H 1.08996 * 109.47700 * 239.99358 * 2 1 3 34 34 H 1.09002 * 109.46696 * 119.99203 * 2 1 3 35 35 H 1.08007 * 119.18150 * 359.97438 * 4 3 2 36 36 H 1.07993 * 120.07189 * 180.02562 * 6 5 4 37 37 H 0.96997 * 119.99503 * 300.59362 * 8 7 6 38 38 H 1.08995 * 109.47166 * 299.99773 * 11 9 8 39 39 H 1.08997 * 109.47055 * 60.00274 * 11 9 8 40 40 H 0.97003 * 119.99907 * 180.02562 * 17 16 14 41 41 H 1.08001 * 120.00163 * 359.97438 * 23 22 12 42 42 H 1.08002 * 119.99981 * 180.27664 * 24 23 22 43 43 H 1.08000 * 120.00199 * 179.83485 * 25 24 23 44 44 H 1.08003 * 119.99861 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.00312 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2433 2.0178 1.1679 5 7 2.6837 3.2462 1.2042 6 6 2.9282 3.9351 0.0864 7 6 2.7162 3.3529 -1.1315 8 7 2.9660 4.0588 -2.3169 9 6 3.8617 3.5865 -3.2064 10 8 4.3889 2.5097 -3.0227 11 6 4.2081 4.3964 -4.4292 12 6 5.2412 3.6397 -5.2662 13 1 6.1044 3.3977 -4.6463 14 6 4.6276 2.3673 -5.7915 15 1 3.5837 2.3451 -6.0675 16 6 5.3989 1.2317 -5.9196 17 7 6.6425 1.2298 -5.4920 18 14 4.6772 -0.3043 -6.7003 19 1 4.9191 -0.2753 -8.1651 20 1 5.3231 -1.5069 -6.1157 21 1 3.2159 -0.3516 -6.4407 22 6 5.6790 4.5009 -6.4228 23 6 4.7736 4.8467 -7.4086 24 6 5.1741 5.6404 -8.4672 25 6 6.4821 6.0808 -8.5448 26 6 7.3887 5.7306 -7.5617 27 6 6.9872 4.9406 -6.5008 28 6 2.2387 2.0201 -1.1692 29 8 2.0354 1.4603 -2.2337 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8935 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.0586 1.4968 2.0957 36 1 3.2926 4.9500 0.1451 37 1 2.4942 4.8870 -2.4967 38 1 3.3089 4.5608 -5.0228 39 1 4.6222 5.3572 -4.1233 40 1 7.1853 0.4309 -5.5825 41 1 3.7527 4.4992 -7.3501 42 1 4.4657 5.9142 -9.2350 43 1 6.7957 6.6986 -9.3732 44 1 8.4106 6.0750 -7.6221 45 1 7.6957 4.6668 -5.7330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646194833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:26 Heat of formation + Delta-G solvation = -21.647718 kcal Electronic energy + Delta-G solvation = -29553.810681 eV Core-core repulsion = 25535.959621 eV Total energy + Delta-G solvation = -4017.851060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.87356 -40.63942 -39.72922 -38.63808 -37.19549 -35.81134 -35.15894 -33.44143 -31.89028 -31.52838 -31.27293 -30.00603 -27.58980 -26.14480 -25.34205 -24.28688 -23.37571 -23.13239 -21.90056 -21.00814 -19.43924 -18.87066 -18.52880 -18.31073 -17.96605 -17.34172 -16.90330 -16.62580 -16.42786 -15.99061 -15.64249 -15.46875 -15.27448 -15.03691 -14.82306 -14.45282 -14.19223 -14.14330 -14.00965 -13.83937 -13.66303 -13.57405 -13.20584 -13.14147 -12.88940 -12.60565 -12.55059 -12.25573 -11.85532 -11.77267 -11.68937 -11.41243 -11.32001 -11.27640 -11.00685 -10.68899 -10.44678 -10.31775 -9.56311 -9.23515 -9.11808 -8.07723 -6.08347 -0.38328 0.75769 0.81367 0.86217 1.26294 1.29652 1.38197 1.40193 2.00704 2.29564 2.41520 2.62790 3.15426 3.23585 3.32148 3.45390 3.76905 3.92521 4.06698 4.18214 4.24035 4.34958 4.36168 4.38517 4.44051 4.52897 4.58815 4.62370 4.72050 4.82980 4.85093 4.91436 4.96759 5.15712 5.20034 5.25117 5.35904 5.50032 5.53267 5.63887 5.74577 5.78778 5.81990 5.93926 6.14614 6.39565 6.44736 6.65964 6.76022 6.84666 6.98663 7.53058 7.61084 9.01959 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012991 B = 0.003525 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.795054 B = 7941.242835 C = 9291.317031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.078 3.922 3 N -0.518 5.518 4 C 0.377 3.623 5 N -0.542 5.542 6 C 0.154 3.846 7 C -0.052 4.052 8 N -0.661 5.661 9 C 0.509 3.491 10 O -0.530 6.530 11 C -0.110 4.110 12 C 0.081 3.919 13 H 0.031 0.969 14 C -0.480 4.480 15 H 0.036 0.964 16 C 0.025 3.975 17 N -0.914 5.914 18 Si 0.929 3.071 19 H -0.267 1.267 20 H -0.290 1.290 21 H -0.283 1.283 22 C -0.048 4.048 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.145 4.145 26 C -0.126 4.126 27 C -0.145 4.145 28 C 0.494 3.506 29 O -0.564 6.564 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.026 0.974 33 H 0.060 0.940 34 H 0.149 0.851 35 H 0.264 0.736 36 H 0.193 0.807 37 H 0.421 0.579 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.252 0.748 41 H 0.111 0.889 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.135 0.865 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.771 7.734 14.028 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.043 4.043 3 N -0.235 5.235 4 C 0.095 3.905 5 N -0.264 5.264 6 C 0.012 3.988 7 C -0.153 4.153 8 N -0.314 5.314 9 C 0.297 3.703 10 O -0.403 6.403 11 C -0.151 4.151 12 C 0.062 3.938 13 H 0.049 0.951 14 C -0.518 4.518 15 H 0.054 0.946 16 C -0.173 4.173 17 N -0.554 5.554 18 Si 0.757 3.243 19 H -0.192 1.192 20 H -0.216 1.216 21 H -0.209 1.209 22 C -0.049 4.049 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.163 4.163 26 C -0.144 4.144 27 C -0.163 4.163 28 C 0.292 3.708 29 O -0.443 6.443 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.167 0.833 35 H 0.280 0.720 36 H 0.210 0.790 37 H 0.260 0.740 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.061 0.939 41 H 0.129 0.871 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.153 0.847 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.157 6.941 14.052 18.676 hybrid contribution -0.464 -1.491 -1.535 2.190 sum -10.621 5.450 12.517 17.297 Atomic orbital electron populations 1.22074 0.92615 1.04491 1.02347 1.22293 0.96985 0.78959 1.06030 1.47096 1.52518 1.16523 1.07370 1.26188 0.84895 0.88785 0.90617 1.68452 1.22010 1.07250 1.28639 1.23099 0.89252 1.01331 0.85094 1.19315 1.12474 0.93885 0.89613 1.43049 1.43069 1.26940 1.18342 1.21312 0.78170 0.86373 0.84429 1.90765 1.52209 1.22249 1.75029 1.21646 1.01598 0.98399 0.93421 1.17629 0.94572 0.91028 0.90610 0.95111 1.20892 0.94503 0.95271 1.41113 0.94622 1.25408 0.95414 1.00590 0.95911 1.70030 1.08783 1.28897 1.47728 0.86003 0.78185 0.80929 0.79206 1.19218 1.21594 1.20887 1.20540 0.93731 0.92931 0.97703 1.21032 0.99682 0.98874 0.94943 1.21375 0.97036 0.98030 0.97916 1.21287 0.93410 1.01991 0.99588 1.21301 1.00291 0.98387 0.94388 1.21129 0.95859 0.99656 0.99677 1.18014 0.80022 0.88699 0.84080 1.90994 1.54045 1.69046 1.30238 0.88518 0.89142 0.95501 0.92087 0.83301 0.72007 0.79047 0.73983 0.89057 0.88142 0.93864 0.87100 0.84145 0.83636 0.84710 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 10.24 71.98 0.74 -1.59 16 2 C 0.08 1.45 6.09 86.38 0.53 1.97 16 3 N -0.52 -12.49 2.57 -654.30 -1.68 -14.18 16 4 C 0.38 5.80 11.47 180.30 2.07 7.87 16 5 N -0.54 -10.70 10.38 -199.32 -2.07 -12.77 16 6 C 0.15 3.65 11.13 84.06 0.94 4.59 16 7 C -0.05 -1.73 5.79 38.27 0.22 -1.51 16 8 N -0.66 -22.74 5.22 -302.77 -1.58 -24.31 16 9 C 0.51 23.26 7.12 87.66 0.62 23.88 16 10 O -0.53 -30.96 13.56 13.39 0.18 -30.78 16 11 C -0.11 -4.65 4.97 29.85 0.15 -4.50 16 12 C 0.08 4.23 1.77 -12.28 -0.02 4.20 16 13 H 0.03 1.88 6.80 -2.39 -0.02 1.86 16 14 C -0.48 -28.65 6.29 25.60 0.16 -28.49 16 15 H 0.04 2.17 7.82 -2.91 -0.02 2.15 16 16 C 0.03 1.58 5.45 84.65 0.46 2.04 16 17 N -0.91 -59.48 12.77 21.45 0.27 -59.21 16 18 Si 0.93 50.60 29.54 68.60 2.03 52.63 16 19 H -0.27 -13.65 7.11 99.48 0.71 -12.95 16 20 H -0.29 -15.66 7.11 99.48 0.71 -14.95 16 21 H -0.28 -15.65 7.11 99.48 0.71 -14.94 16 22 C -0.05 -2.24 4.77 -19.86 -0.09 -2.34 16 23 C -0.13 -5.19 8.88 22.27 0.20 -4.99 16 24 C -0.13 -4.20 10.05 22.27 0.22 -3.98 16 25 C -0.14 -4.53 10.05 22.27 0.22 -4.31 16 26 C -0.13 -4.41 10.05 22.27 0.22 -4.19 16 27 C -0.14 -6.29 9.67 22.27 0.22 -6.08 16 28 C 0.49 18.45 6.96 85.04 0.59 19.04 16 29 O -0.56 -27.95 15.18 11.23 0.17 -27.78 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.06 1.69 7.46 -2.39 -0.02 1.67 16 34 H 0.15 1.12 8.02 -2.39 -0.02 1.10 16 35 H 0.26 0.45 8.03 -2.91 -0.02 0.42 16 36 H 0.19 3.34 8.06 -2.91 -0.02 3.31 16 37 H 0.42 10.55 8.83 -92.71 -0.82 9.73 16 38 H 0.09 3.53 7.90 -2.39 -0.02 3.51 16 39 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.25 15.84 8.31 -92.71 -0.77 15.07 16 41 H 0.11 4.49 7.82 -2.91 -0.02 4.47 16 42 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 43 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 44 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 45 H 0.10 4.40 7.95 -2.91 -0.02 4.38 16 Total: -1.00 -98.14 385.02 4.96 -93.19 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.20 Total: 21.59 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 7.44 Total: 1.63 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -5.06 Total: -110.47 kcal Atomic # 8 Polarization: -58.91 SS G_CDS: 0.35 Total: -58.56 kcal Atomic # 14 Polarization: 50.60 SS G_CDS: 2.03 Total: 52.63 kcal Total: -98.14 4.96 -93.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646194833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.537 kcal (2) G-P(sol) polarization free energy of solvation -98.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds