Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35705 * 119.43791 * 2 1 4 4 C 1.35266 * 120.99608 * 179.97438 * 3 2 1 5 5 C 1.41148 * 119.87193 * 359.97438 * 4 3 2 6 6 C 1.48456 * 120.53726 * 179.97438 * 5 4 3 7 7 O 1.21473 * 120.00074 * 180.02562 * 6 5 4 8 8 N 1.34782 * 120.00080 * 0.02562 * 6 5 4 9 9 C 1.46496 * 119.99673 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47121 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.46660 * 65.00104 * 10 9 8 12 12 N 1.46500 * 109.47051 * 305.00351 * 10 9 8 13 13 C 1.36936 * 119.99747 * 154.99518 * 12 10 9 14 14 H 1.08004 * 120.00681 * 0.02562 * 13 12 10 15 15 C 1.38811 * 119.99771 * 179.97438 * 13 12 10 16 16 N 1.31616 * 120.00242 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00192 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47388 * 89.99858 * 17 15 13 19 19 H 1.48501 * 109.47441 * 210.00171 * 17 15 13 20 20 H 1.48501 * 109.46973 * 330.00108 * 17 15 13 21 21 C 1.50702 * 109.47576 * 184.99898 * 10 9 8 22 22 C 1.38235 * 119.99651 * 79.72867 * 21 10 9 23 23 C 1.38234 * 119.99880 * 179.79290 * 22 21 10 24 24 C 1.38231 * 119.99897 * 0.43620 * 23 22 21 25 25 C 1.38240 * 119.99951 * 359.81784 * 24 23 22 26 26 C 1.38226 * 119.99866 * 359.97349 * 25 24 23 27 27 C 1.38297 * 118.92313 * 359.70471 * 5 4 3 28 28 C 1.34595 * 119.44300 * 179.97438 * 2 1 3 29 29 O 1.22013 * 119.95931 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.47199 * 270.02677 * 1 2 3 31 31 H 1.09009 * 109.47009 * 30.02717 * 1 2 3 32 32 H 1.08994 * 109.46929 * 150.02302 * 1 2 3 33 33 H 1.07996 * 119.50052 * 0.02562 * 3 2 1 34 34 H 1.08010 * 120.06021 * 180.02562 * 4 3 2 35 35 H 0.96996 * 120.00202 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.47907 * 299.99837 * 9 8 6 37 37 H 1.09005 * 109.47185 * 60.00365 * 9 8 6 38 38 H 0.96998 * 120.00294 * 334.99796 * 12 10 9 39 39 H 0.97004 * 120.00607 * 179.97438 * 16 15 13 40 40 H 1.08001 * 119.99990 * 359.97438 * 22 21 10 41 41 H 1.08001 * 119.99908 * 180.27577 * 23 22 21 42 42 H 1.08003 * 120.00096 * 179.83479 * 24 23 22 43 43 H 1.07998 * 119.99726 * 180.02562 * 25 24 23 44 44 H 1.08006 * 119.99590 * 180.02562 * 26 25 24 45 45 H 1.07993 * 120.49317 * 180.31128 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1818 0.0000 4 6 3.4841 1.2186 0.0005 5 6 4.2202 0.0142 0.0016 6 6 5.7045 0.0374 0.0016 7 8 6.3282 -1.0050 0.0021 8 7 6.3602 1.2150 0.0011 9 6 7.8250 1.2377 0.0017 10 6 8.3126 2.6879 0.0003 11 1 8.0163 3.1717 0.9310 12 7 7.7176 3.4020 -1.1322 13 6 7.5679 4.7622 -1.0815 14 1 7.8887 5.3087 -0.2069 15 6 7.0046 5.4389 -2.1547 16 7 6.6141 4.7731 -3.2208 17 14 6.8009 7.2945 -2.0859 18 1 8.0176 7.9467 -2.6333 19 1 5.6199 7.6931 -2.8931 20 1 6.6034 7.7189 -0.6766 21 6 9.8143 2.7130 -0.1230 22 6 10.4093 2.5426 -1.3590 23 6 11.7866 2.5698 -1.4728 24 6 12.5693 2.7586 -0.3491 25 6 11.9745 2.9238 0.8878 26 6 10.5970 2.9008 1.0008 27 6 3.5361 -1.1877 0.0084 28 6 2.1266 -1.1721 0.0005 29 8 1.5056 -2.2224 0.0005 30 1 -0.3634 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8901 -0.5134 33 1 1.5748 2.1069 0.0004 34 1 3.9995 2.1678 0.0009 35 1 5.8622 2.0473 0.0003 36 1 8.1960 0.7302 0.8921 37 1 8.1966 0.7290 -0.8879 38 1 7.4298 2.9114 -1.9178 39 1 6.2202 5.2459 -3.9706 40 1 9.7979 2.3910 -2.2363 41 1 12.2513 2.4411 -2.4392 42 1 13.6456 2.7772 -0.4375 43 1 12.5860 3.0716 1.7656 44 1 10.1323 3.0303 1.9671 45 1 4.0738 -2.1242 0.0144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664583194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = 7.641007 kcal Electronic energy + Delta-G solvation = -28666.134739 eV Core-core repulsion = 24649.553734 eV Total energy + Delta-G solvation = -4016.581006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.45025 -39.57799 -38.79977 -36.98155 -36.01470 -34.58830 -33.69188 -32.06709 -30.45005 -30.02285 -29.62601 -28.59736 -27.23784 -24.64798 -23.63193 -23.40515 -22.62309 -21.95250 -20.35965 -19.99714 -18.18029 -17.59274 -17.39346 -16.93459 -16.39005 -16.23289 -15.74284 -15.58465 -15.31122 -14.76250 -14.60062 -14.27488 -14.22593 -13.95229 -13.50137 -13.36106 -13.19448 -13.08932 -12.89653 -12.80851 -12.80321 -12.41137 -12.07798 -11.94428 -11.82567 -11.20078 -11.01826 -10.90094 -10.77184 -10.50989 -10.40898 -10.21232 -10.15645 -9.88316 -9.77814 -9.15266 -8.80919 -8.44364 -8.23365 -8.11985 -7.21092 -5.93821 -3.25692 0.37832 1.57680 1.82312 1.89205 2.45164 2.90410 3.26790 3.32624 3.38727 3.40116 3.69760 4.26268 4.37980 4.43761 4.45915 4.67845 4.91709 4.97274 5.04821 5.15889 5.19580 5.30578 5.33807 5.37641 5.40143 5.50073 5.55808 5.65783 5.72000 5.80176 5.89990 5.99440 6.04834 6.10148 6.19838 6.26326 6.35483 6.44214 6.58394 6.66369 6.85612 6.89809 6.98262 7.23592 7.49068 7.57099 7.72489 7.82776 8.21875 8.33763 9.35286 9.84611 10.21473 11.27232 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.003256 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.585576 B = 8597.667087 C =10906.781953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.497 5.497 3 C 0.128 3.872 4 C -0.206 4.206 5 C -0.025 4.025 6 C 0.549 3.451 7 O -0.537 6.537 8 N -0.700 5.700 9 C 0.119 3.881 10 C 0.198 3.802 11 H 0.067 0.933 12 N -0.714 5.714 13 C -0.245 4.245 14 H 0.071 0.929 15 C -0.004 4.004 16 N -0.927 5.927 17 Si 0.904 3.096 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.281 1.281 21 C -0.082 4.082 22 C -0.083 4.083 23 C -0.127 4.127 24 C -0.134 4.134 25 C -0.130 4.130 26 C -0.120 4.120 27 C -0.177 4.177 28 C 0.512 3.488 29 O -0.550 6.550 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.169 0.831 34 H 0.156 0.844 35 H 0.412 0.588 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.387 0.613 39 H 0.257 0.743 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.540 -4.263 7.907 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.208 5.208 3 C 0.002 3.998 4 C -0.229 4.229 5 C -0.032 4.032 6 C 0.335 3.665 7 O -0.415 6.415 8 N -0.352 5.352 9 C -0.005 4.005 10 C 0.087 3.913 11 H 0.085 0.915 12 N -0.355 5.355 13 C -0.376 4.376 14 H 0.089 0.911 15 C -0.201 4.201 16 N -0.574 5.574 17 Si 0.735 3.265 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.086 4.086 22 C -0.102 4.102 23 C -0.146 4.146 24 C -0.152 4.152 25 C -0.148 4.148 26 C -0.139 4.139 27 C -0.200 4.200 28 C 0.314 3.686 29 O -0.433 6.433 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.186 0.814 34 H 0.173 0.827 35 H 0.250 0.750 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.222 0.778 39 H 0.067 0.933 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.574 -5.462 7.926 10.657 hybrid contribution -0.162 1.708 -0.470 1.779 sum -4.736 -3.754 7.456 9.598 Atomic orbital electron populations 1.22182 0.77136 1.05105 1.03901 1.45377 1.09413 1.06844 1.59204 1.21856 0.93625 0.89297 0.95000 1.20828 0.92632 0.98954 1.10460 1.20552 0.93896 0.93865 0.94854 1.18271 0.86651 0.84166 0.77441 1.90758 1.68466 1.32353 1.49888 1.45878 1.07985 1.08552 1.72796 1.21669 0.78852 0.97725 1.02286 1.19487 0.87819 0.90119 0.93884 0.91544 1.42476 1.71679 1.04905 1.16479 1.19183 1.34173 0.83094 1.01116 0.91062 1.24709 1.01298 0.97757 0.96295 1.69653 1.46767 1.34568 1.06447 0.86247 0.77304 0.85655 0.77267 1.21697 1.21795 1.20694 1.20946 0.97672 0.97001 0.92975 1.21007 0.94028 0.97355 0.97779 1.21109 0.94231 1.01124 0.98087 1.20990 0.99088 1.02004 0.93113 1.20986 0.94883 1.01775 0.97158 1.21007 0.93570 1.01169 0.98132 1.22684 0.92101 0.99684 1.05549 1.17078 0.88915 0.82851 0.79777 1.90948 1.69414 1.29779 1.53174 0.90544 0.89473 0.88776 0.81398 0.82686 0.74974 0.91125 0.91223 0.77814 0.93343 0.85905 0.86843 0.87077 0.86979 0.86721 0.82084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.34 59.85 0.62 1.03 16 2 N -0.50 -5.19 2.98 -127.13 -0.38 -5.57 16 3 C 0.13 1.13 10.25 -16.90 -0.17 0.96 16 4 C -0.21 -2.25 9.50 -39.54 -0.38 -2.63 16 5 C -0.02 -0.34 5.91 -104.56 -0.62 -0.96 16 6 C 0.55 8.73 7.80 -12.05 -0.09 8.63 16 7 O -0.54 -10.13 16.39 5.39 0.09 -10.04 16 8 N -0.70 -10.54 5.35 -61.05 -0.33 -10.86 16 9 C 0.12 1.87 5.21 -4.04 -0.02 1.85 16 10 C 0.20 3.39 2.64 -69.08 -0.18 3.20 16 11 H 0.07 1.12 7.94 -51.93 -0.41 0.70 16 12 N -0.71 -15.01 3.81 -54.55 -0.21 -15.21 16 13 C -0.24 -5.91 9.92 -15.06 -0.15 -6.06 16 14 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 15 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 16 N -0.93 -25.10 13.06 55.49 0.72 -24.38 16 17 Si 0.90 20.54 29.55 -169.99 -5.02 15.52 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 21 C -0.08 -1.41 4.92 -104.63 -0.51 -1.92 16 22 C -0.08 -1.47 9.32 -39.58 -0.37 -1.84 16 23 C -0.13 -2.00 10.05 -39.59 -0.40 -2.40 16 24 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 25 C -0.13 -1.84 10.05 -39.59 -0.40 -2.23 16 26 C -0.12 -1.83 9.67 -39.59 -0.38 -2.21 16 27 C -0.18 -2.55 9.61 -38.53 -0.37 -2.92 16 28 C 0.51 7.27 7.42 -15.31 -0.11 7.15 16 29 O -0.55 -9.40 16.62 4.91 0.08 -9.32 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.36 8.00 -51.92 -0.42 -0.06 16 32 H 0.09 0.78 7.37 -51.93 -0.38 0.40 16 33 H 0.17 0.83 8.02 -52.49 -0.42 0.41 16 34 H 0.16 1.57 6.50 -52.48 -0.34 1.23 16 35 H 0.41 5.97 6.24 -40.82 -0.25 5.72 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.39 8.86 7.80 -40.82 -0.32 8.55 16 39 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.12 2.32 7.73 -52.49 -0.41 1.92 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 43 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.11 1.52 8.04 -52.48 -0.42 1.10 16 45 H 0.16 2.42 7.69 -52.49 -0.40 2.01 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -32.14 387.31 -9.10 -41.24 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -5.86 Total: 15.62 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -4.03 Total: -2.84 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.19 Total: -56.02 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.17 Total: -19.36 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.14 -9.10 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664583194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.882 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds