Wall clock time and date at job start Sat Apr 11 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35585 * 118.80622 * 2 1 4 4 C 1.34861 * 121.79668 * 179.71977 * 3 2 1 5 5 C 1.41669 * 119.34441 * 359.97438 * 4 3 2 6 6 O 1.22087 * 121.06942 * 179.97438 * 5 4 3 7 7 C 1.47103 * 117.86010 * 359.97438 * 5 4 3 8 8 C 1.47288 * 120.87921 * 180.02562 * 7 5 4 9 9 O 1.21611 * 120.00226 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99763 * 180.02562 * 8 7 5 11 11 C 1.46505 * 119.99861 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.46855 * 180.02562 * 11 10 8 13 13 C 1.38238 * 120.00014 * 269.72505 * 12 11 10 14 14 C 1.38229 * 119.99949 * 179.77144 * 13 12 11 15 15 C 1.38234 * 120.00018 * 0.48289 * 14 13 12 16 16 C 1.50708 * 120.00079 * 179.77044 * 15 14 13 17 17 N 1.46497 * 109.47153 * 270.02115 * 16 15 14 18 18 C 1.36930 * 120.00065 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00063 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00328 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99515 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00092 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47573 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47329 * 120.00358 * 22 20 18 25 25 H 1.48504 * 109.46934 * 239.99712 * 22 20 18 26 26 C 1.38227 * 120.00149 * 359.78871 * 15 14 13 27 27 C 1.38235 * 120.00096 * 89.99912 * 12 11 10 28 28 C 1.34347 * 118.80055 * 179.72882 * 2 1 3 29 29 H 1.08993 * 109.47139 * 90.00030 * 1 2 3 30 30 H 1.09000 * 109.47017 * 210.00347 * 1 2 3 31 31 H 1.08999 * 109.46932 * 330.00217 * 1 2 3 32 32 H 1.07996 * 119.09869 * 359.74061 * 3 2 1 33 33 H 1.08000 * 120.32418 * 180.02562 * 4 3 2 34 34 H 0.97002 * 120.00135 * 0.02562 * 10 8 7 35 35 H 1.08999 * 109.46732 * 299.99838 * 11 10 8 36 36 H 1.09002 * 109.46943 * 59.99861 * 11 10 8 37 37 H 1.08002 * 119.99929 * 359.97438 * 13 12 11 38 38 H 1.08007 * 120.00008 * 180.25033 * 14 13 12 39 39 H 1.09002 * 109.46618 * 30.02084 * 16 15 14 40 40 H 1.09000 * 109.47093 * 150.02041 * 16 15 14 41 41 H 0.97002 * 119.99792 * 0.02562 * 17 16 15 42 42 H 0.97001 * 119.99661 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.00381 * 179.97438 * 26 15 14 44 44 H 1.07993 * 120.00131 * 0.02562 * 27 12 11 45 45 H 1.07996 * 119.82069 * 0.26132 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1184 1.1881 0.0000 4 6 3.4651 1.2584 0.0056 5 6 4.2228 0.0614 0.0122 6 8 5.4434 0.0884 0.0169 7 6 3.4917 -1.2150 0.0132 8 6 4.2128 -2.4993 0.0205 9 8 5.4288 -2.5138 0.0263 10 7 3.5250 -3.6583 0.0208 11 6 4.2422 -4.9357 0.0287 12 6 3.2493 -6.0693 0.0267 13 6 2.7916 -6.5894 1.2230 14 6 1.8772 -7.6260 1.2211 15 6 1.4280 -8.1493 0.0231 16 6 0.4350 -9.2830 0.0211 17 7 1.1522 -10.5604 0.0290 18 6 0.4534 -11.7379 0.0293 19 1 -0.6265 -11.7250 0.0233 20 6 1.1330 -12.9484 0.0361 21 7 2.4491 -12.9641 0.0429 22 14 0.1796 -14.5547 0.0358 23 1 -1.2770 -14.2660 0.0282 24 1 0.5352 -15.3412 -1.1726 25 1 0.5229 -15.3343 1.2523 26 6 1.8899 -7.6331 -1.1731 27 6 2.8004 -6.5929 -1.1713 28 6 2.1123 -1.1773 0.0056 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.5446 2.1030 -0.0043 33 1 3.9610 2.2178 0.0059 34 1 2.5550 -3.6467 0.0159 35 1 4.8726 -5.0038 -0.8579 36 1 4.8636 -4.9980 0.9221 37 1 3.1460 -6.1835 2.1590 38 1 1.5166 -8.0297 2.1558 39 1 -0.1957 -9.2150 0.9075 40 1 -0.1860 -9.2205 -0.8725 41 1 2.1222 -10.5720 0.0347 42 1 2.9239 -13.8099 0.0473 43 1 1.5393 -8.0422 -2.1091 44 1 3.1616 -6.1899 -2.1059 45 1 1.5500 -2.0993 0.0057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698718047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:48 Heat of formation + Delta-G solvation = -19.545587 kcal Electronic energy + Delta-G solvation = -27449.829181 eV Core-core repulsion = 23432.069276 eV Total energy + Delta-G solvation = -4017.759905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.03139 -40.73709 -39.97884 -38.84015 -36.89821 -35.74685 -33.98230 -33.45968 -32.98147 -31.83683 -31.54331 -28.56126 -27.62714 -26.30842 -25.37806 -24.16208 -23.60210 -23.54576 -21.89416 -21.67067 -19.32142 -19.30406 -18.47957 -17.83245 -17.15819 -16.87353 -16.77851 -16.67037 -16.54247 -16.31012 -15.84407 -15.69354 -15.53434 -15.23762 -14.97545 -14.80097 -14.59186 -14.32085 -14.16946 -14.03797 -13.69620 -13.50280 -13.38970 -13.19779 -13.06888 -12.97615 -12.79916 -12.66145 -12.13557 -11.94928 -11.89378 -11.71745 -11.25819 -10.99175 -10.72848 -10.35649 -10.15788 -9.80442 -9.62536 -9.04215 -9.02528 -7.95483 -5.25670 -0.17125 0.25309 0.39328 0.52075 1.48137 1.49027 1.55820 1.59277 1.91081 2.16990 2.55858 2.82120 2.89330 3.31077 3.38137 3.65960 3.68625 3.80223 3.91163 3.94362 4.06122 4.15863 4.25748 4.27630 4.29755 4.41819 4.58442 4.58803 4.65212 4.71212 4.73730 4.81820 4.92039 4.92140 4.93268 5.08567 5.21932 5.34302 5.35350 5.47914 5.48765 5.62450 5.71915 5.80819 5.83110 6.07328 6.25378 6.59225 7.10783 7.31950 7.32129 8.05879 8.29807 9.27998 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023554 B = 0.001774 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.486638 B =15780.907856 C =16654.306061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.459 5.459 3 C 0.166 3.834 4 C -0.300 4.300 5 C 0.377 3.623 6 O -0.570 6.570 7 C -0.354 4.354 8 C 0.567 3.433 9 O -0.580 6.580 10 N -0.710 5.710 11 C 0.172 3.828 12 C -0.106 4.106 13 C -0.097 4.097 14 C -0.112 4.112 15 C -0.085 4.085 16 C 0.185 3.815 17 N -0.741 5.741 18 C -0.245 4.245 19 H 0.081 0.919 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.977 3.023 23 H -0.262 1.262 24 H -0.294 1.294 25 H -0.294 1.294 26 C -0.113 4.113 27 C -0.097 4.097 28 C 0.222 3.778 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.224 0.776 33 H 0.156 0.844 34 H 0.411 0.589 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.140 0.860 38 H 0.123 0.877 39 H 0.032 0.968 40 H 0.032 0.968 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.123 0.877 44 H 0.140 0.860 45 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.375 33.523 -0.062 36.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.141 5.141 3 C 0.041 3.959 4 C -0.323 4.323 5 C 0.270 3.730 6 O -0.458 6.458 7 C -0.365 4.365 8 C 0.357 3.643 9 O -0.460 6.460 10 N -0.364 5.364 11 C 0.049 3.951 12 C -0.107 4.107 13 C -0.115 4.115 14 C -0.131 4.131 15 C -0.086 4.086 16 C 0.060 3.940 17 N -0.383 5.383 18 C -0.377 4.377 19 H 0.099 0.901 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.805 3.195 23 H -0.187 1.187 24 H -0.221 1.221 25 H -0.221 1.221 26 C -0.131 4.131 27 C -0.116 4.116 28 C 0.086 3.914 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.240 0.760 33 H 0.174 0.826 34 H 0.249 0.751 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.158 0.842 38 H 0.141 0.859 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.204 0.796 42 H 0.060 0.940 43 H 0.141 0.859 44 H 0.157 0.843 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.321 33.472 -0.059 35.668 hybrid contribution 0.327 -1.455 -0.017 1.492 sum -11.994 32.017 -0.076 34.189 Atomic orbital electron populations 1.23049 0.71999 1.08291 1.06585 1.43349 1.11026 1.03702 1.56008 1.22432 0.93067 0.90285 0.90136 1.22395 0.94929 0.99705 1.15285 1.19072 0.88947 0.89615 0.75323 1.90783 1.17484 1.90129 1.47438 1.22138 0.94402 0.95005 1.24930 1.18005 0.86657 0.83922 0.75713 1.90826 1.15963 1.87772 1.51444 1.45761 1.10516 1.04063 1.76050 1.19993 0.92546 0.80017 1.02542 1.19706 0.99169 0.98269 0.93570 1.21171 0.96197 0.95941 0.98239 1.21157 0.97806 0.96546 0.97592 1.20166 0.98160 0.96075 0.94179 1.19784 0.92492 0.82990 0.98749 1.42574 1.05604 1.00710 1.89429 1.19718 0.91589 0.85153 1.41219 0.90146 1.25633 0.96475 1.01227 1.03643 1.69850 1.07178 1.25631 1.59433 0.85027 0.78353 0.79503 0.76571 1.18662 1.22141 1.22149 1.21157 0.97782 0.96543 0.97630 1.21169 0.96282 0.95884 0.98219 1.22646 0.91256 0.91544 0.85955 0.88043 0.87007 0.86019 0.76002 0.82617 0.75079 0.91444 0.91416 0.84243 0.85896 0.94964 0.94969 0.79579 0.94041 0.85907 0.84260 0.77570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.40 10.53 127.77 1.35 0.95 16 2 N -0.46 0.06 2.97 -547.48 -1.63 -1.57 16 3 C 0.17 0.33 10.17 83.34 0.85 1.18 16 4 C -0.30 -4.35 10.01 22.34 0.22 -4.13 16 5 C 0.38 10.53 6.97 25.45 0.18 10.70 16 6 O -0.57 -23.71 16.41 13.54 0.22 -23.49 16 7 C -0.35 -7.48 6.05 -18.63 -0.11 -7.59 16 8 C 0.57 15.83 7.77 86.62 0.67 16.50 16 9 O -0.58 -23.81 15.57 15.07 0.23 -23.58 16 10 N -0.71 -13.56 5.50 -470.24 -2.59 -16.15 16 11 C 0.17 3.90 5.80 85.63 0.50 4.40 16 12 C -0.11 -2.37 5.25 -19.87 -0.10 -2.47 16 13 C -0.10 -2.26 9.70 22.27 0.22 -2.04 16 14 C -0.11 -3.17 9.70 22.27 0.22 -2.96 16 15 C -0.09 -2.72 5.25 -19.87 -0.10 -2.83 16 16 C 0.19 7.19 6.38 85.64 0.55 7.74 16 17 N -0.74 -37.54 5.59 -347.17 -1.94 -39.48 16 18 C -0.25 -13.56 9.99 84.04 0.84 -12.72 16 19 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 20 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 21 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 22 Si 0.98 45.79 29.55 68.60 2.03 47.82 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 C -0.11 -3.18 9.70 22.27 0.22 -2.96 16 27 C -0.10 -2.26 9.70 22.27 0.22 -2.05 16 28 C 0.22 1.38 9.79 84.25 0.83 2.20 16 29 H 0.10 -1.18 8.14 -2.39 -0.02 -1.20 16 30 H 0.11 -1.36 7.96 -2.39 -0.02 -1.38 16 31 H 0.12 -1.73 7.96 -2.39 -0.02 -1.75 16 32 H 0.22 -2.02 7.98 -2.91 -0.02 -2.04 16 33 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.41 4.36 6.54 -92.71 -0.61 3.75 16 35 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 36 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 37 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 38 H 0.12 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.03 1.22 8.09 -2.39 -0.02 1.20 16 40 H 0.03 1.22 8.09 -2.39 -0.02 1.20 16 41 H 0.37 20.57 7.66 -92.71 -0.71 19.86 16 42 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.12 3.43 8.06 -2.91 -0.02 3.41 16 44 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 45 H 0.21 -0.48 6.35 -2.91 -0.02 -0.50 16 Total: -1.00 -101.38 389.60 3.31 -98.06 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -0.28 Total: 18.11 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 6.98 Total: -0.08 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -5.87 Total: -116.85 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: 0.46 Total: -47.07 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -101.38 3.31 -98.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698718047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.515 kcal (2) G-P(sol) polarization free energy of solvation -101.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds