Wall clock time and date at job start Sat Apr 11 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39714 * 119.99128 * 264.66111 * 3 2 1 5 5 C 1.37609 * 120.00094 * 179.72156 * 4 3 2 6 6 C 1.39754 * 119.99107 * 0.55343 * 5 4 3 7 7 C 1.47686 * 119.99847 * 179.69856 * 6 5 4 8 8 O 1.21577 * 119.99709 * 147.71625 * 7 6 5 9 9 N 1.34774 * 120.00298 * 327.71588 * 7 6 5 10 10 C 1.46505 * 119.99812 * 4.33651 * 9 7 6 11 11 C 1.46500 * 120.00248 * 184.34093 * 9 7 6 12 12 C 1.53938 * 113.73080 * 218.76851 * 11 9 7 13 13 N 1.48192 * 86.09443 * 221.95187 * 12 11 9 14 14 C 1.46905 * 111.06836 * 137.52102 * 13 12 11 15 15 C 1.50699 * 109.46872 * 70.56537 * 14 13 12 16 16 O 1.21295 * 120.00623 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00037 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00423 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99797 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00123 * 179.97438 * 18 17 15 21 21 N 1.31416 * 120.00122 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99915 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46974 * 60.00110 * 22 20 18 24 24 H 1.48506 * 109.46972 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47268 * 299.99903 * 22 20 18 26 26 C 1.47958 * 90.80243 * 24.60215 * 13 12 11 27 27 C 1.39744 * 119.99273 * 359.71784 * 6 5 4 28 28 C 1.37594 * 119.99644 * 0.02562 * 27 6 5 29 29 H 4.51947 * 14.06564 * 359.97438 * 4 2 1 30 30 H 1.07994 * 120.00294 * 359.97429 * 4 3 2 31 31 H 1.07990 * 120.00708 * 180.24903 * 5 4 3 32 32 H 1.08998 * 109.47028 * 94.86977 * 10 9 7 33 33 H 1.09001 * 109.46892 * 214.86698 * 10 9 7 34 34 H 1.08996 * 109.47347 * 334.86351 * 10 9 7 35 35 H 1.09003 * 112.93538 * 350.32526 * 11 9 7 36 36 H 1.08997 * 113.75839 * 336.23207 * 12 11 9 37 37 H 1.08996 * 113.75754 * 107.60259 * 12 11 9 38 38 H 1.08997 * 109.47208 * 190.56179 * 14 13 12 39 39 H 1.08992 * 109.46988 * 310.56879 * 14 13 12 40 40 H 0.97009 * 119.99884 * 359.97438 * 17 15 14 41 41 H 0.97003 * 119.99846 * 180.02562 * 21 20 18 42 42 H 1.08997 * 113.75733 * 221.08660 * 26 13 12 43 43 H 1.08993 * 113.76142 * 89.71767 * 26 13 12 44 44 H 1.08000 * 120.00030 * 180.02562 * 27 6 5 45 45 H 1.08006 * 119.99514 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3044 0.1135 1.2048 5 6 4.6805 0.1084 1.2056 6 6 5.3793 0.0019 0.0000 7 6 6.8562 0.0031 0.0001 8 8 7.4646 -0.6353 -0.8368 9 7 7.5295 0.7119 0.9278 10 6 6.7996 1.4038 1.9930 11 6 8.9913 0.7905 0.8710 12 6 9.6687 0.7373 2.2524 13 7 10.5595 1.8070 1.7442 14 6 10.7744 2.8436 2.7627 15 6 11.6360 2.2903 3.8685 16 8 12.0317 1.1451 3.8137 17 7 11.9659 3.0678 4.9188 18 6 12.7502 2.5647 5.9245 19 1 13.1033 1.5452 5.8753 20 6 13.0908 3.3664 7.0070 21 7 12.6617 4.6071 7.0666 22 14 14.1588 2.6807 8.3776 23 1 15.4679 2.2560 7.8197 24 1 14.3765 3.7287 9.4070 25 1 13.4816 1.5124 8.9955 26 6 9.5309 2.2284 0.7676 27 6 4.6806 -0.1053 -1.2054 28 6 3.3046 -0.1054 -1.2052 29 1 -1.0500 0.0005 -0.0002 30 1 2.7643 0.2007 2.1359 31 1 5.2203 0.1916 2.1372 32 1 6.7617 0.7696 2.8787 33 1 7.3087 2.3366 2.2356 34 1 5.7854 1.6202 1.6573 35 1 9.4256 0.1054 0.1429 36 1 9.0229 1.0555 3.0707 37 1 10.1810 -0.2033 2.4543 38 1 11.2715 3.7011 2.3093 39 1 9.8136 3.1552 3.1722 40 1 11.6491 3.9836 4.9628 41 1 12.8998 5.1669 7.8222 42 1 9.9334 2.4768 -0.2144 43 1 8.8448 2.9836 1.1508 44 1 5.2205 -0.1880 -2.1371 45 1 2.7646 -0.1879 -2.1369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699717227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:51 Heat of formation + Delta-G solvation = 77.423678 kcal Electronic energy + Delta-G solvation = -28034.815286 eV Core-core repulsion = 24021.260284 eV Total energy + Delta-G solvation = -4013.555002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.11076 -39.87773 -38.56435 -37.65291 -35.41767 -34.20096 -33.89195 -31.67094 -31.31960 -30.98527 -29.71819 -27.49390 -26.10848 -25.81627 -24.70411 -23.38358 -22.97687 -20.73338 -19.61768 -19.25800 -19.11251 -17.96181 -17.67172 -16.97886 -16.24732 -16.22306 -15.86182 -15.59044 -15.37302 -14.78192 -14.62400 -14.50959 -14.11790 -13.97814 -13.83913 -13.69117 -13.41418 -13.13825 -12.88418 -12.78676 -12.56248 -12.22960 -12.09059 -11.81213 -11.74285 -11.53703 -11.46222 -11.10683 -11.01268 -10.89336 -10.62866 -10.45947 -10.23759 -10.11778 -9.52118 -9.46049 -9.02450 -8.82888 -8.73316 -8.28225 -7.99164 -6.44273 -3.85176 0.13759 0.88847 2.14908 2.24631 2.60872 2.84607 3.18310 3.24237 3.28721 3.51687 3.73099 3.85770 3.97867 4.13978 4.21503 4.37247 4.44241 4.50565 4.70234 4.77517 4.87131 4.94579 5.01764 5.06083 5.12683 5.17600 5.24428 5.38063 5.41862 5.43963 5.51451 5.63369 5.70657 5.75660 5.81056 5.84661 5.93092 5.94840 6.12813 6.22005 6.28060 6.36397 6.54688 7.01950 7.05660 7.15203 7.52620 7.87678 8.02687 8.58409 9.15260 9.50896 10.02630 10.73323 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019375 B = 0.001920 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.839333 B =14580.700530 C =15469.359562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.156 4.156 3 C 0.030 3.970 4 C -0.104 4.104 5 C -0.099 4.099 6 C -0.121 4.121 7 C 0.558 3.442 8 O -0.531 6.531 9 N -0.598 5.598 10 C 0.053 3.947 11 C 0.113 3.887 12 C 0.014 3.986 13 N -0.448 5.448 14 C 0.014 3.986 15 C 0.442 3.558 16 O -0.578 6.578 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.013 4.013 27 C -0.061 4.061 28 C -0.103 4.103 29 H 0.226 0.774 30 H 0.134 0.866 31 H 0.150 0.850 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.139 0.861 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.660 -3.238 -13.246 27.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.156 4.156 3 C 0.030 3.970 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.124 4.124 7 C 0.347 3.653 8 O -0.408 6.408 9 N -0.329 5.329 10 C -0.089 4.089 11 C 0.009 3.991 12 C -0.116 4.116 13 N -0.171 5.171 14 C -0.118 4.118 15 C 0.227 3.773 16 O -0.462 6.462 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.143 4.143 27 C -0.080 4.080 28 C -0.121 4.121 29 H 0.242 0.758 30 H 0.152 0.848 31 H 0.168 0.832 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.149 0.851 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.157 0.843 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.317 -4.338 -13.766 26.578 hybrid contribution -0.636 0.831 1.309 1.676 sum -22.953 -3.508 -12.457 26.350 Atomic orbital electron populations 1.24959 0.95814 0.98544 0.98962 1.20021 0.92025 1.01856 1.01657 1.16177 0.86714 1.00197 0.93936 1.21179 0.93755 0.99887 0.97356 1.21877 0.94197 0.97214 0.98434 1.20053 0.93139 1.04533 0.94647 1.18331 0.86960 0.79025 0.80963 1.90803 1.69625 1.42169 1.38197 1.47788 1.07001 1.50145 1.28012 1.22516 0.98156 0.97815 0.90441 1.23316 0.77638 0.98107 1.00029 1.24289 0.93581 0.99032 0.94670 1.68405 1.31704 1.06955 1.10040 1.22440 0.99555 0.95911 0.93916 1.19663 0.86123 0.87378 0.84090 1.90532 1.58034 1.18458 1.79126 1.41858 1.45760 1.13913 1.18498 1.19652 1.26022 0.99329 0.97914 0.87969 1.25258 0.98338 0.95319 0.98976 1.69604 1.45794 1.06750 1.32195 0.85917 0.80174 0.78227 0.79902 1.19862 1.20967 1.19920 1.24502 0.93855 0.96449 0.99502 1.21139 0.93459 0.95625 0.97744 1.21161 0.93701 0.99927 0.97349 0.75763 0.84804 0.83220 0.91462 0.90862 0.88928 0.85124 0.91053 0.88034 0.88964 0.92936 0.77516 0.91814 0.88698 0.91055 0.84303 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 19.25 29.55 0.57 -0.42 16 2 C -0.16 -1.24 13.23 -38.83 -0.51 -1.75 16 3 C 0.03 0.25 5.73 -106.87 -0.61 -0.37 16 4 C -0.10 -0.77 9.73 -39.26 -0.38 -1.15 16 5 C -0.10 -0.77 7.41 -39.24 -0.29 -1.06 16 6 C -0.12 -1.18 5.47 -104.91 -0.57 -1.76 16 7 C 0.56 6.87 7.43 -12.40 -0.09 6.78 16 8 O -0.53 -8.36 16.23 5.30 0.09 -8.27 16 9 N -0.60 -6.61 3.09 -176.46 -0.55 -7.16 16 10 C 0.05 0.42 7.35 59.85 0.44 0.86 16 11 C 0.11 1.46 4.41 -69.64 -0.31 1.15 16 12 C 0.01 0.21 6.27 -2.63 -0.02 0.19 16 13 N -0.45 -7.36 5.95 -239.72 -1.43 -8.78 16 14 C 0.01 0.24 5.31 -4.97 -0.03 0.21 16 15 C 0.44 10.30 7.59 -10.99 -0.08 10.22 16 16 O -0.58 -15.53 15.13 5.54 0.08 -15.45 16 17 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 18 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 22 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C -0.01 -0.16 7.52 -2.76 -0.02 -0.18 16 27 C -0.06 -0.55 9.58 -39.25 -0.38 -0.92 16 28 C -0.10 -0.81 9.73 -39.27 -0.38 -1.19 16 29 H 0.23 0.47 7.80 -54.09 -0.42 0.05 16 30 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 31 H 0.15 0.93 4.82 -52.49 -0.25 0.68 16 32 H 0.07 0.48 7.35 -51.93 -0.38 0.10 16 33 H 0.07 0.57 6.56 -51.93 -0.34 0.23 16 34 H 0.09 0.59 4.70 -51.93 -0.24 0.35 16 35 H 0.13 1.89 7.20 -51.93 -0.37 1.52 16 36 H 0.07 1.02 6.52 -51.93 -0.34 0.68 16 37 H 0.10 1.76 8.10 -51.93 -0.42 1.34 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.05 0.79 7.70 -51.93 -0.40 0.39 16 40 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 44 H 0.14 1.19 7.95 -52.49 -0.42 0.77 16 45 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -34.29 381.70 -8.77 -43.05 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -5.45 Total: 9.91 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -2.91 Total: 2.70 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -1.30 Total: -53.58 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.17 Total: -23.72 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.29 -8.77 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699717227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.474 kcal (2) G-P(sol) polarization free energy of solvation -34.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds