Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00368 * 2 1 4 4 C 1.52996 * 109.47326 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47114 * 67.44509 * 4 3 2 6 6 C 1.46500 * 119.99821 * 278.08430 * 5 4 3 7 7 C 1.50700 * 109.47358 * 270.00187 * 6 5 4 8 8 H 1.08006 * 119.99972 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00383 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00179 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99662 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47201 * 90.00183 * 11 9 7 13 13 H 1.48501 * 109.47213 * 210.00427 * 11 9 7 14 14 H 1.48505 * 109.47371 * 330.00132 * 11 9 7 15 15 C 1.34770 * 120.00045 * 98.08888 * 5 4 3 16 16 O 1.21571 * 119.99923 * 186.07266 * 15 5 4 17 17 C 1.47691 * 120.00276 * 6.06829 * 15 5 4 18 18 C 1.40093 * 120.85835 * 315.67572 * 17 15 5 19 19 N 1.31946 * 119.01731 * 179.97438 * 18 17 15 20 20 C 1.32717 * 120.89233 * 359.97438 * 19 18 17 21 21 C 1.48186 * 119.04975 * 179.97438 * 20 19 18 22 22 C 1.39448 * 120.12993 * 359.97438 * 21 20 19 23 23 C 1.37991 * 119.86584 * 180.02562 * 22 21 20 24 24 C 1.38344 * 120.12974 * 359.97438 * 23 22 21 25 25 C 1.38342 * 120.26588 * 359.97438 * 24 23 22 26 26 C 1.37984 * 120.13523 * 0.02663 * 25 24 23 27 27 N 1.32716 * 121.89928 * 0.26340 * 20 19 18 28 28 C 1.31950 * 120.89124 * 359.47174 * 27 20 19 29 29 H 1.09003 * 109.46868 * 299.99435 * 1 2 3 30 30 H 1.08995 * 109.47312 * 59.99277 * 1 2 3 31 31 H 1.09001 * 109.47233 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46968 * 60.00219 * 3 2 1 33 33 H 1.09001 * 109.47635 * 300.00667 * 3 2 1 34 34 H 1.08998 * 109.46941 * 307.44053 * 4 3 2 35 35 H 1.09003 * 109.46799 * 187.44512 * 4 3 2 36 36 H 1.09005 * 109.47227 * 29.99688 * 6 5 4 37 37 H 1.09002 * 109.47352 * 149.99920 * 6 5 4 38 38 H 0.97006 * 119.99824 * 179.97438 * 10 9 7 39 39 H 1.07997 * 120.49084 * 359.95358 * 18 17 15 40 40 H 1.07998 * 120.07189 * 0.04098 * 22 21 20 41 41 H 1.08000 * 119.93564 * 180.25504 * 23 22 21 42 42 H 1.08002 * 119.86947 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.93400 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.06876 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.49159 * 180.27813 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9799 0.6181 -1.2765 6 6 3.9412 -0.8311 -1.4876 7 6 5.2498 -1.4376 -1.0508 8 1 6.0323 -0.8066 -0.6559 9 6 5.4486 -2.7979 -1.1564 10 7 6.5908 -3.3270 -0.7757 11 14 4.0954 -3.8892 -1.8401 12 1 4.2484 -4.0035 -3.3127 13 1 4.1899 -5.2382 -1.2264 14 1 2.7722 -3.2935 -1.5246 15 6 4.4245 1.4301 -2.2559 16 8 4.6887 0.9733 -3.3511 17 6 4.5906 2.8749 -1.9988 18 6 3.6080 3.6003 -1.3127 19 7 3.7940 4.8896 -1.1024 20 6 4.8929 5.4982 -1.5307 21 6 5.0596 6.9479 -1.2728 22 6 4.0710 7.6555 -0.5896 23 6 4.2315 9.0054 -0.3529 24 6 5.3706 9.6567 -0.7913 25 6 6.3552 8.9598 -1.4686 26 6 6.2060 7.6097 -1.7113 27 7 5.8443 4.8471 -2.1882 28 6 5.7356 3.5552 -2.4336 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6888 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8487 0.5329 0.8151 35 1 3.9782 2.1717 0.1325 36 1 3.1282 -1.2619 -0.9031 37 1 3.7788 -1.0401 -2.5450 38 1 6.7304 -4.2841 -0.8496 39 1 2.7113 3.1116 -0.9613 40 1 3.1816 7.1480 -0.2463 41 1 3.4685 9.5537 0.1797 42 1 5.4918 10.7134 -0.6041 43 1 7.2421 9.4737 -1.8088 44 1 6.9752 7.0667 -2.2405 45 1 6.5158 3.0308 -2.9653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103216235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = 17.789820 kcal Electronic energy + Delta-G solvation = -28962.716882 eV Core-core repulsion = 24946.575962 eV Total energy + Delta-G solvation = -4016.140920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40147 -39.48007 -38.77235 -37.73021 -35.26830 -33.96505 -33.40813 -32.50334 -31.16560 -30.53207 -29.92673 -27.82330 -26.25501 -25.26122 -24.82659 -22.94740 -22.66701 -22.41859 -21.77193 -19.21206 -18.19682 -17.82453 -17.19166 -16.86885 -16.70671 -16.10267 -15.64137 -15.62657 -15.05077 -15.00269 -14.84275 -14.78725 -14.13646 -14.01081 -13.84246 -13.71420 -13.53852 -13.16354 -12.91999 -12.54450 -12.30075 -12.05812 -11.95035 -11.74917 -11.61475 -11.50170 -11.33095 -11.15561 -10.99772 -10.85483 -10.47778 -10.22275 -10.05626 -9.64936 -9.56780 -9.40874 -9.30838 -9.19239 -8.69885 -8.56405 -7.86436 -6.07548 -4.06361 0.06307 0.92172 1.17175 1.33457 3.02791 3.31115 3.35464 3.39845 3.42055 3.47862 3.62885 3.75919 3.88582 3.95078 4.38569 4.42589 4.54806 4.69912 4.73114 4.81868 4.92119 5.00354 5.09483 5.15821 5.22657 5.25160 5.27308 5.30658 5.35770 5.39336 5.43074 5.60904 5.65915 5.70588 5.81886 6.00377 6.05001 6.22506 6.26128 6.30427 6.63368 6.72883 6.85371 6.97516 7.19721 7.21243 7.62259 7.83129 8.05309 8.43711 8.68847 8.94299 9.52629 11.05621 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016125 B = 0.002787 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.031312 B =10044.824770 C =11243.833481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.038 3.962 4 C 0.099 3.901 5 N -0.573 5.573 6 C 0.216 3.784 7 C -0.531 4.531 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.898 5.898 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.261 1.261 15 C 0.557 3.443 16 O -0.525 6.525 17 C -0.225 4.225 18 C 0.165 3.835 19 N -0.513 5.513 20 C 0.362 3.638 21 C -0.048 4.048 22 C -0.070 4.070 23 C -0.133 4.133 24 C -0.101 4.101 25 C -0.132 4.132 26 C -0.069 4.069 27 N -0.511 5.511 28 C 0.205 3.795 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.179 0.821 40 H 0.137 0.863 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.138 0.862 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.913 22.813 2.998 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C -0.039 4.039 4 C -0.025 4.025 5 N -0.303 5.303 6 C 0.096 3.904 7 C -0.570 4.570 8 H 0.091 0.909 9 C -0.128 4.128 10 N -0.536 5.536 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.185 1.185 15 C 0.342 3.658 16 O -0.402 6.402 17 C -0.232 4.232 18 C -0.002 4.002 19 N -0.227 5.227 20 C 0.099 3.901 21 C -0.050 4.050 22 C -0.089 4.089 23 C -0.151 4.151 24 C -0.119 4.119 25 C -0.150 4.150 26 C -0.088 4.088 27 N -0.224 5.224 28 C 0.038 3.962 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.196 0.804 40 H 0.155 0.845 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.156 0.844 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.459 23.113 2.596 24.749 hybrid contribution -0.884 -1.460 -0.402 1.753 sum -9.343 21.653 2.195 23.685 Atomic orbital electron populations 1.22752 0.81669 1.02814 0.99490 1.88095 1.19080 1.26499 1.95168 1.23226 0.94892 0.85924 0.99893 1.21803 0.91502 1.00288 0.88945 1.47813 1.61020 1.09062 1.12390 1.19847 0.98530 0.73974 0.98025 1.21316 0.99479 0.93133 1.43034 0.90858 1.24809 0.95491 0.97790 0.94728 1.69895 1.23806 1.12219 1.47721 0.86875 0.83186 0.80146 0.79773 1.20020 1.21152 1.18515 1.17692 0.78859 0.84145 0.85122 1.90794 1.50443 1.75903 1.23038 1.22103 0.99227 0.98056 1.03833 1.23924 0.97889 0.89006 0.89357 1.68340 1.22385 1.10449 1.21488 1.21437 0.85377 0.94304 0.89028 1.18094 0.96516 0.88120 1.02286 1.21353 0.98313 0.93880 0.95375 1.21123 0.98330 0.94397 1.01265 1.21355 0.93758 1.00016 0.96799 1.21135 0.99654 0.94139 1.00103 1.21390 0.96447 0.94257 0.96738 1.68405 1.29855 1.09300 1.14818 1.23417 0.94704 0.88485 0.89627 0.94279 0.94348 0.89642 0.92049 0.93353 0.88139 0.89609 0.92935 0.94579 0.92576 0.80433 0.84481 0.85518 0.85826 0.85473 0.84380 0.80080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.37 -5.68 8.93 -35.23 -0.31 -5.99 16 3 C 0.04 0.49 5.23 37.16 0.19 0.68 16 4 C 0.10 1.53 5.34 -4.04 -0.02 1.50 16 5 N -0.57 -11.51 2.46 -176.23 -0.43 -11.94 16 6 C 0.22 5.24 4.14 -5.19 -0.02 5.21 16 7 C -0.53 -15.09 9.94 -34.44 -0.34 -15.43 16 8 H 0.07 2.27 8.06 -52.48 -0.42 1.84 16 9 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 10 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 11 Si 0.87 21.62 27.47 -169.99 -4.67 16.95 16 12 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 15 C 0.56 11.16 7.32 -12.40 -0.09 11.07 16 16 O -0.52 -12.53 16.55 5.30 0.09 -12.44 16 17 C -0.22 -3.60 5.15 -104.64 -0.54 -4.14 16 18 C 0.17 2.23 8.69 -16.81 -0.15 2.09 16 19 N -0.51 -6.92 9.42 -10.83 -0.10 -7.02 16 20 C 0.36 5.02 7.55 -156.79 -1.18 3.84 16 21 C -0.05 -0.57 5.88 -104.91 -0.62 -1.19 16 22 C -0.07 -0.70 9.56 -39.22 -0.38 -1.07 16 23 C -0.13 -1.06 10.03 -39.63 -0.40 -1.46 16 24 C -0.10 -0.75 10.04 -39.50 -0.40 -1.15 16 25 C -0.13 -1.09 10.03 -39.64 -0.40 -1.49 16 26 C -0.07 -0.72 9.56 -39.22 -0.38 -1.09 16 27 N -0.51 -7.44 9.42 -10.83 -0.10 -7.54 16 28 C 0.20 3.13 11.00 -16.80 -0.18 2.94 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.57 6.42 -51.93 -0.33 0.24 16 34 H 0.10 1.66 8.13 -51.93 -0.42 1.24 16 35 H 0.09 1.14 4.96 -51.93 -0.26 0.89 16 36 H 0.05 1.25 5.52 -51.93 -0.29 0.97 16 37 H 0.04 0.94 6.77 -51.93 -0.35 0.59 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.18 2.04 3.77 -52.49 -0.20 1.84 16 40 H 0.14 1.30 7.50 -52.49 -0.39 0.91 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.14 1.43 7.50 -52.48 -0.39 1.04 16 45 H 0.18 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 376.65 15.07 5.68 5.68 Total: -1.00 -35.12 376.65 -8.57 -43.69 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.61 Total: 1.62 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -3.88 Total: 3.82 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.14 Total: -53.33 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.23 Total: -18.44 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.12 -8.57 -43.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103216235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.478 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds