Wall clock time and date at job start Sat Apr 11 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35906 * 117.00031 * 2 1 4 4 C 1.38754 * 120.05424 * 354.59885 * 3 2 1 5 5 C 1.38115 * 119.94167 * 179.72096 * 4 3 2 6 6 C 1.38285 * 120.05974 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.10894 * 359.97438 * 6 5 4 8 8 C 1.38158 * 120.05771 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.03395 * 180.02562 * 8 7 6 10 10 C 1.50700 * 115.55152 * 114.34564 * 9 8 7 11 11 O 1.21294 * 119.99601 * 113.80329 * 10 9 8 12 12 N 1.34770 * 120.00350 * 293.80213 * 10 9 8 13 13 C 1.40162 * 120.00038 * 172.89467 * 12 10 9 14 14 C 1.40404 * 125.97363 * 0.02562 * 13 12 10 15 15 C 1.35237 * 107.86978 * 179.97438 * 14 13 12 16 16 N 1.34974 * 107.85973 * 359.97438 * 15 14 13 17 17 C 1.46496 * 125.97393 * 180.02562 * 16 15 14 18 18 C 1.50709 * 109.46919 * 124.99843 * 17 16 15 19 19 H 1.07994 * 119.99969 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99601 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99666 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00250 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46992 * 90.00062 * 22 20 18 24 24 H 1.48501 * 109.47124 * 210.00005 * 22 20 18 25 25 H 1.48501 * 109.47138 * 330.00175 * 22 20 18 26 26 N 1.31218 * 125.97075 * 179.68989 * 13 12 10 27 27 C 1.53004 * 117.49449 * 328.68266 * 9 8 7 28 28 C 1.53005 * 117.50237 * 260.02598 * 9 8 7 29 29 H 1.09004 * 109.47191 * 59.99320 * 1 2 3 30 30 H 1.08998 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46457 * 299.99213 * 1 2 3 32 32 H 1.08000 * 120.02785 * 359.69545 * 4 3 2 33 33 H 1.08001 * 119.96970 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.94631 * 180.02562 * 6 5 4 35 35 H 1.08006 * 119.97362 * 180.02562 * 7 6 5 36 36 H 0.96998 * 120.00301 * 352.89572 * 12 10 9 37 37 H 1.08003 * 126.06869 * 359.95684 * 14 13 12 38 38 H 1.07999 * 126.07324 * 180.02562 * 15 14 13 39 39 H 1.08998 * 109.47425 * 244.99511 * 17 16 15 40 40 H 1.08995 * 109.47521 * 5.00162 * 17 16 15 41 41 H 0.96997 * 120.00418 * 179.97438 * 21 20 18 42 42 H 1.08995 * 117.49887 * 359.97438 * 27 9 8 43 43 H 1.09005 * 117.49640 * 145.02046 * 27 9 8 44 44 H 1.09000 * 117.49588 * 214.97646 * 28 9 8 45 45 H 1.08997 * 117.49655 * 359.97035 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2962 2.3729 -0.1130 5 6 1.9251 3.6025 -0.1070 6 6 3.3009 3.6763 0.0111 7 6 4.0503 2.5200 0.1238 8 6 3.4260 1.2875 0.1183 9 6 4.2433 0.0275 0.2418 10 6 4.0181 -0.7727 1.4988 11 8 3.5160 -1.8750 1.4342 12 7 4.3745 -0.2637 2.6947 13 6 4.0318 -0.9390 3.8741 14 6 3.3230 -2.1483 3.9559 15 6 3.1967 -2.4677 5.2639 16 7 3.8012 -1.5009 5.9863 17 6 3.8996 -1.4526 7.4471 18 6 5.3464 -1.3249 7.8492 19 1 6.1156 -1.2842 7.0922 20 6 5.6880 -1.2599 9.1834 21 7 6.9505 -1.1479 9.5343 22 14 4.3574 -1.3294 10.4926 23 1 4.1165 -2.7430 10.8789 24 1 4.7945 -0.5583 11.6841 25 1 3.1035 -0.7424 9.9557 26 7 4.3225 -0.5547 5.0946 27 6 5.6574 0.0427 -0.3421 28 6 4.5481 -0.7458 -1.0428 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5137 0.8901 32 1 0.2217 2.3159 -0.2061 33 1 1.3419 4.5073 -0.1954 34 1 3.7908 4.6388 0.0160 35 1 5.1247 2.5801 0.2164 36 1 4.8683 0.5700 2.7393 37 1 2.9455 -2.7217 3.1221 38 1 2.7010 -3.3415 5.6601 39 1 3.3416 -0.5940 7.8207 40 1 3.4845 -2.3675 7.8698 41 1 7.1909 -1.1018 10.4728 42 1 5.9964 0.9639 -0.8159 43 1 6.4247 -0.5265 0.1828 44 1 4.5861 -1.8332 -0.9786 45 1 4.1571 -0.3433 -1.9772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265611217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:53 Heat of formation + Delta-G solvation = 75.458221 kcal Electronic energy + Delta-G solvation = -29123.392221 eV Core-core repulsion = 25109.751990 eV Total energy + Delta-G solvation = -4013.640230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.03570 -40.43226 -39.29914 -37.70880 -36.43891 -34.67362 -33.22864 -31.25931 -31.03980 -30.33704 -29.36219 -27.46886 -27.28890 -25.14015 -23.19654 -22.86460 -22.19312 -21.81466 -20.90145 -19.87889 -19.28870 -18.27716 -17.22006 -17.03791 -16.52809 -16.19251 -15.96682 -15.75013 -15.41613 -15.06735 -14.78413 -14.62908 -14.46252 -13.94681 -13.83546 -13.50008 -13.11688 -12.93887 -12.88192 -12.51021 -12.30343 -12.27932 -12.10511 -11.91026 -11.70934 -11.36504 -11.26242 -11.11293 -10.78508 -10.75328 -10.67494 -10.50972 -9.97689 -9.96659 -9.62163 -9.48225 -9.07171 -8.75327 -8.35139 -8.14418 -7.47436 -6.22131 -4.24204 1.00012 1.19842 2.33809 2.77308 2.87810 3.11682 3.16351 3.23392 3.24812 3.37185 3.55754 3.75389 3.83834 4.24054 4.26887 4.55651 4.62219 4.67582 4.77420 4.85289 4.87732 4.98667 5.05635 5.08338 5.17752 5.32503 5.37051 5.40468 5.43819 5.55264 5.67553 5.74324 5.76761 5.94264 6.06480 6.13528 6.26115 6.27023 6.41477 6.47311 6.51543 6.62819 6.68450 7.20153 7.26906 7.41969 7.64019 7.84782 8.34533 8.35965 8.61187 8.88205 9.32906 10.90650 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014820 B = 0.002646 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.860009 B =10579.902957 C =10635.096975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.298 6.298 3 C 0.145 3.855 4 C -0.211 4.211 5 C -0.077 4.077 6 C -0.158 4.158 7 C -0.070 4.070 8 C -0.085 4.085 9 C -0.105 4.105 10 C 0.565 3.435 11 O -0.504 6.504 12 N -0.627 5.627 13 C 0.263 3.737 14 C -0.283 4.283 15 C 0.050 3.950 16 N -0.320 5.320 17 C 0.232 3.768 18 C -0.534 4.534 19 H 0.086 0.914 20 C 0.076 3.924 21 N -0.888 5.888 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.264 1.264 26 N -0.297 5.297 27 C -0.159 4.159 28 C -0.126 4.126 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.411 0.589 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.041 0.959 40 H 0.048 0.952 41 H 0.268 0.732 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.924 6.864 -23.270 26.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.210 6.210 3 C 0.099 3.901 4 C -0.229 4.229 5 C -0.096 4.096 6 C -0.176 4.176 7 C -0.088 4.088 8 C -0.086 4.086 9 C -0.108 4.108 10 C 0.350 3.650 11 O -0.376 6.376 12 N -0.274 5.274 13 C 0.010 3.990 14 C -0.315 4.315 15 C -0.099 4.099 16 N -0.102 5.102 17 C 0.113 3.887 18 C -0.572 4.572 19 H 0.104 0.896 20 C -0.128 4.128 21 N -0.525 5.525 22 Si 0.699 3.301 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.189 1.189 26 N -0.128 5.128 27 C -0.196 4.196 28 C -0.164 4.164 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.246 0.754 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.540 6.767 -22.304 25.580 hybrid contribution -1.022 0.035 0.542 1.157 sum -11.562 6.803 -21.762 25.564 Atomic orbital electron populations 1.23073 0.78571 1.04181 1.00949 1.86254 1.21048 1.25880 1.87827 1.18891 0.91610 0.84776 0.94863 1.21238 1.00215 0.92320 1.09171 1.20971 0.94775 0.96922 0.96887 1.21028 0.93949 0.98362 1.04246 1.20902 1.00270 0.90597 0.97035 1.18081 0.89959 0.92781 1.07729 1.19696 0.99921 0.96895 0.94299 1.19210 0.77583 0.85655 0.82547 1.90621 1.41627 1.19507 1.85873 1.42386 1.56327 1.26124 1.02559 1.19125 0.99639 0.93957 0.86291 1.21508 1.13228 1.00091 0.96635 1.22535 0.99992 0.95597 0.91796 1.48606 1.39109 1.15247 1.07196 1.20033 1.00192 0.98171 0.70280 1.21118 0.90099 1.52149 0.93821 0.89625 1.24833 0.95527 0.94292 0.98111 1.69872 1.16241 1.48900 1.17510 0.86908 0.82371 0.78859 0.81977 1.19710 1.20533 1.18885 1.77403 1.23145 1.15676 0.96545 1.23234 0.90192 1.03350 1.02869 1.22987 0.99918 0.99726 0.93734 0.92886 0.88072 0.92718 0.85355 0.85773 0.85595 0.84883 0.75398 0.82251 0.81453 0.94091 0.93380 0.92196 0.87434 0.87655 0.87393 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.83 101.05 0.99 1.23 16 2 O -0.30 -3.76 9.61 -19.45 -0.19 -3.95 16 3 C 0.14 1.71 6.60 -39.22 -0.26 1.45 16 4 C -0.21 -2.06 9.05 -39.44 -0.36 -2.41 16 5 C -0.08 -0.67 10.04 -39.61 -0.40 -1.06 16 6 C -0.16 -1.34 10.04 -39.56 -0.40 -1.74 16 7 C -0.07 -0.65 9.22 -39.61 -0.37 -1.02 16 8 C -0.08 -0.96 5.12 -104.48 -0.54 -1.49 16 9 C -0.10 -1.24 1.68 -156.81 -0.26 -1.51 16 10 C 0.57 8.96 6.60 -10.99 -0.07 8.88 16 11 O -0.50 -9.34 13.90 5.55 0.08 -9.27 16 12 N -0.63 -10.61 5.44 -11.13 -0.06 -10.67 16 13 C 0.26 5.49 8.10 -154.39 -1.25 4.24 16 14 C -0.28 -5.72 9.61 -39.84 -0.38 -6.10 16 15 C 0.05 0.99 11.44 -17.24 -0.20 0.80 16 16 N -0.32 -7.41 3.67 -62.56 -0.23 -7.64 16 17 C 0.23 5.59 5.33 -5.19 -0.03 5.57 16 18 C -0.53 -15.24 9.79 -34.43 -0.34 -15.58 16 19 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 20 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 21 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 22 Si 0.87 20.28 27.47 -169.99 -4.67 15.61 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 26 N -0.30 -7.01 12.42 31.44 0.39 -6.62 16 27 C -0.16 -1.44 9.43 -26.69 -0.25 -1.69 16 28 C -0.13 -1.29 9.76 -26.69 -0.26 -1.55 16 29 H 0.05 0.35 7.42 -51.93 -0.39 -0.04 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.46 7.90 -51.93 -0.41 0.04 16 32 H 0.13 1.00 6.31 -52.49 -0.33 0.67 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.96 7.03 -52.48 -0.37 0.59 16 36 H 0.41 6.04 8.83 -40.82 -0.36 5.68 16 37 H 0.16 3.14 5.95 -52.48 -0.31 2.82 16 38 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 39 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 40 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.11 0.73 7.14 -51.93 -0.37 0.36 16 43 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.11 1.19 8.01 -51.93 -0.42 0.78 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -35.57 382.58 -8.44 -44.01 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.84 Total: 8.72 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -4.46 Total: -9.93 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.87 Total: -50.96 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.11 Total: -13.21 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.57 -8.44 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265611217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.470 kcal (2) G-P(sol) polarization free energy of solvation -35.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds