Wall clock time and date at job start Sat Apr 11 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34226 * 117.00166 * 2 1 4 4 O 1.20831 * 119.99976 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00143 * 180.02562 * 3 2 1 6 6 F 1.39900 * 110.27132 * 312.08611 * 5 3 2 7 7 C 1.54593 * 110.31274 * 74.28002 * 5 3 2 8 8 C 1.54943 * 102.91873 * 140.87331 * 7 5 3 9 9 N 1.48529 * 103.23110 * 322.58517 * 8 7 5 10 10 C 1.46896 * 111.00073 * 159.72217 * 9 8 7 11 11 C 1.50696 * 109.47263 * 52.60847 * 10 9 8 12 12 O 1.21281 * 119.99616 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99977 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99563 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46862 * 90.00056 * 14 13 11 16 16 H 1.08003 * 119.99899 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99870 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00409 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47069 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47559 * 119.99816 * 19 17 15 22 22 H 1.48497 * 109.47224 * 239.99977 * 19 17 15 23 23 C 1.46496 * 120.00068 * 359.97438 * 13 11 10 24 24 C 1.53008 * 109.46709 * 90.00235 * 23 13 11 25 25 C 1.47205 * 109.46700 * 179.97438 * 24 23 13 26 26 N 9.35164 * 163.30104 * 262.09899 * 3 1 2 27 27 C 1.47906 * 105.81645 * 39.20833 * 9 8 7 28 28 H 1.09003 * 109.47512 * 60.00013 * 1 2 3 29 29 H 1.09003 * 109.47272 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47298 * 299.99674 * 1 2 3 31 31 H 1.08999 * 110.72465 * 259.23386 * 7 5 3 32 32 H 1.09004 * 110.72424 * 22.34070 * 7 5 3 33 33 H 1.08995 * 110.66363 * 81.02624 * 8 7 5 34 34 H 1.09004 * 110.66427 * 204.15338 * 8 7 5 35 35 H 1.09002 * 109.47199 * 172.60745 * 10 9 8 36 36 H 1.09006 * 109.47203 * 292.60633 * 10 9 8 37 37 H 1.09000 * 109.46631 * 209.99274 * 14 13 11 38 38 H 1.08998 * 109.47566 * 329.99773 * 14 13 11 39 39 H 0.96998 * 120.00116 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.47261 * 210.00021 * 23 13 11 41 41 H 1.08994 * 109.47152 * 330.00618 * 23 13 11 42 42 H 1.08993 * 109.47608 * 299.99952 * 24 23 13 43 43 H 1.09003 * 109.46724 * 60.00181 * 24 23 13 44 44 H 1.08998 * 109.91583 * 215.31824 * 27 9 8 45 45 H 1.09004 * 109.91554 * 94.02407 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 9 4.0967 0.4216 0.9730 7 6 4.1222 0.9109 -1.3964 8 6 5.2902 1.9130 -1.5761 9 7 4.7705 3.1564 -0.9518 10 6 5.8684 4.0637 -0.5923 11 6 6.7487 4.2882 -1.7946 12 8 6.4874 3.7455 -2.8473 13 7 7.8269 5.0914 -1.6999 14 6 8.6829 5.3092 -2.8687 15 6 8.1793 6.4983 -3.6455 16 1 7.3084 7.0376 -3.3030 17 6 8.8303 6.8978 -4.7933 18 7 9.8911 6.2415 -5.2101 19 14 8.2057 8.3713 -5.7566 20 1 7.0061 8.9307 -5.0832 21 1 9.2671 9.4079 -5.8193 22 1 7.8467 7.9466 -7.1335 23 6 8.1428 5.7465 -0.4282 24 6 9.0621 4.8431 0.3963 25 6 9.3800 5.5016 1.6739 26 7 9.6237 6.0105 2.6616 27 6 4.0257 2.7231 0.2503 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.4889 -0.1154 -1.4100 32 1 3.3627 1.0579 -2.1644 33 1 6.1807 1.5634 -1.0539 34 1 5.5009 2.0725 -2.6336 35 1 5.4578 5.0170 -0.2595 36 1 6.4570 3.6212 0.2114 37 1 9.7053 5.4963 -2.5403 38 1 8.6617 4.4243 -3.5046 39 1 10.3488 6.5223 -6.0178 40 1 8.6441 6.6946 -0.6226 41 1 7.2216 5.9293 0.1250 42 1 8.5608 3.8950 0.5907 43 1 9.9833 4.6603 -0.1570 44 1 3.1591 3.3665 0.4022 45 1 4.6767 2.7601 1.1238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267733987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:58 Heat of formation + Delta-G solvation = -114.490546 kcal Electronic energy + Delta-G solvation = -30190.271888 eV Core-core repulsion = 25737.625636 eV Total energy + Delta-G solvation = -4452.646252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.30139 -40.91508 -39.79931 -38.09554 -36.93400 -36.70571 -35.26608 -33.02496 -32.29879 -30.90537 -29.41933 -28.61633 -27.76648 -26.12800 -24.07743 -23.48953 -22.68860 -21.61653 -20.54940 -18.73689 -18.60661 -17.68172 -17.46153 -16.94260 -16.68040 -16.53109 -16.25313 -15.64166 -15.33969 -15.19361 -14.85630 -14.75302 -14.41910 -14.36097 -13.91269 -13.82679 -13.56771 -13.50005 -13.02975 -12.86981 -12.61241 -12.46817 -12.46055 -12.34060 -12.21576 -11.90289 -11.76608 -11.63924 -11.50534 -11.32011 -11.20979 -11.19912 -11.00675 -10.87894 -10.66025 -10.62774 -10.19518 -9.70476 -9.01457 -8.51302 -8.49307 -7.89299 -6.11277 -4.15661 1.62706 2.07854 2.67617 2.76337 3.18224 3.27549 3.36105 3.37150 3.42185 3.68203 3.81255 3.93100 4.11562 4.19095 4.40505 4.46383 4.72612 4.81029 4.82503 4.90408 4.97356 5.03950 5.07047 5.13690 5.18391 5.24605 5.31577 5.38920 5.44720 5.50404 5.58783 5.75719 5.77999 5.88395 6.01781 6.15956 6.64951 6.67380 6.92807 7.20355 7.30626 7.38693 7.53452 7.85150 8.14013 8.18646 8.79533 8.93915 9.50295 10.96884 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.002964 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.513674 B = 9443.010881 C =11151.629968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.348 6.348 3 C 0.456 3.544 4 O -0.479 6.479 5 C 0.123 3.877 6 F -0.181 7.181 7 C -0.137 4.137 8 C 0.031 3.969 9 N -0.490 5.490 10 C 0.022 3.978 11 C 0.510 3.490 12 O -0.517 6.517 13 N -0.595 5.595 14 C 0.246 3.754 15 C -0.527 4.527 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.116 3.884 24 C -0.050 4.050 25 C 0.216 3.784 26 N -0.444 5.444 27 C 0.019 3.981 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.047 0.953 39 H 0.263 0.737 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.069 -12.646 12.010 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.264 6.264 3 C 0.296 3.704 4 O -0.364 6.364 5 C 0.103 3.897 6 F -0.161 7.161 7 C -0.175 4.175 8 C -0.095 4.095 9 N -0.215 5.215 10 C -0.109 4.109 11 C 0.296 3.704 12 O -0.393 6.393 13 N -0.328 5.328 14 C 0.127 3.873 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.010 4.010 24 C -0.091 4.091 25 C -0.102 4.102 26 N -0.121 5.121 27 C -0.109 4.109 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.149 0.851 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.250 -11.601 12.415 20.947 hybrid contribution 0.008 0.258 -0.169 0.309 sum -12.242 -11.342 12.246 20.700 Atomic orbital electron populations 1.23373 0.75689 1.04105 1.02896 1.86550 1.23898 1.32483 1.83485 1.23681 0.91474 0.82090 0.73132 1.90709 1.66008 1.36075 1.43608 1.21600 0.85995 0.91637 0.90444 1.92961 1.86829 1.72119 1.64178 1.23236 0.99977 1.01857 0.92451 1.23669 0.94261 0.86783 1.04835 1.64791 1.22435 1.13488 1.20763 1.22435 0.92542 0.99295 0.96665 1.20037 0.81246 0.79872 0.89280 1.90616 1.70245 1.48460 1.29974 1.48204 1.27293 1.45627 1.11632 1.19365 0.88470 0.97943 0.81516 1.21449 1.13147 1.13023 1.08997 0.92255 1.24910 0.94871 0.97117 0.97074 1.69924 1.19370 1.40156 1.23859 0.86462 0.78764 0.82288 0.80046 1.19740 1.21029 1.20887 1.21329 0.98511 0.96258 0.84946 1.19897 1.03881 0.98951 0.86408 1.29153 0.93060 0.93575 0.94444 1.81283 1.09254 1.09328 1.12251 1.23611 1.01475 0.91675 0.94132 0.91442 0.87706 0.91643 0.88120 0.88485 0.93173 0.85055 0.87586 0.91916 0.94696 0.93502 0.92722 0.88561 0.90632 0.87789 0.86403 0.86533 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.52 10.56 -39.25 -0.41 -3.94 16 3 C 0.46 5.27 6.85 36.01 0.25 5.52 16 4 O -0.48 -6.45 15.05 -18.75 -0.28 -6.73 16 5 C 0.12 1.35 1.63 -90.41 -0.15 1.21 16 6 F -0.18 -2.02 16.83 2.25 0.04 -1.98 16 7 C -0.14 -1.44 6.40 -24.87 -0.16 -1.60 16 8 C 0.03 0.40 5.30 -1.90 -0.01 0.39 16 9 N -0.49 -6.49 5.26 -231.89 -1.22 -7.71 16 10 C 0.02 0.27 4.07 -4.98 -0.02 0.25 16 11 C 0.51 8.75 7.38 -10.99 -0.08 8.67 16 12 O -0.52 -10.98 13.10 5.56 0.07 -10.91 16 13 N -0.60 -10.24 2.46 -175.06 -0.43 -10.67 16 14 C 0.25 5.58 5.16 -5.19 -0.03 5.55 16 15 C -0.53 -13.75 9.39 -34.44 -0.32 -14.07 16 16 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.08 13.29 55.43 0.74 -24.35 16 19 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.12 1.44 5.17 -4.04 -0.02 1.42 16 24 C -0.05 -0.48 6.03 -29.51 -0.18 -0.66 16 25 C 0.22 2.49 15.44 -20.71 -0.32 2.17 16 26 N -0.44 -6.35 18.55 42.22 0.78 -5.57 16 27 C 0.02 0.22 6.14 -2.75 -0.02 0.20 16 28 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 31 H 0.10 0.88 8.12 -51.93 -0.42 0.46 16 32 H 0.10 1.01 7.86 -51.93 -0.41 0.60 16 33 H 0.05 0.59 8.02 -51.93 -0.42 0.18 16 34 H 0.13 2.03 5.97 -51.93 -0.31 1.72 16 35 H 0.11 1.20 7.40 -51.93 -0.38 0.82 16 36 H 0.06 0.61 6.85 -51.93 -0.36 0.25 16 37 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 38 H 0.05 1.21 7.42 -51.93 -0.39 0.83 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 41 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 42 H 0.10 0.80 7.22 -51.93 -0.37 0.42 16 43 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.12 1.37 6.49 -51.93 -0.34 1.03 16 45 H 0.07 0.68 7.45 -51.93 -0.39 0.30 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -33.41 384.96 -6.21 -39.62 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.19 Total: -1.52 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -0.09 Total: 11.93 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.13 Total: -48.29 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.62 Total: -21.58 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.41 -6.21 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267733987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.870 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds