Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34226 * 117.00166 * 2 1 4 4 O 1.20831 * 119.99976 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00143 * 180.02562 * 3 2 1 6 6 F 1.39900 * 110.27132 * 312.08611 * 5 3 2 7 7 C 1.54593 * 110.31274 * 74.28002 * 5 3 2 8 8 C 1.54943 * 102.91873 * 140.87331 * 7 5 3 9 9 N 1.48529 * 103.23110 * 322.58517 * 8 7 5 10 10 C 1.46896 * 111.00073 * 159.72217 * 9 8 7 11 11 C 1.50696 * 109.47263 * 52.60847 * 10 9 8 12 12 O 1.21281 * 119.99616 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99977 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99563 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46862 * 90.00056 * 14 13 11 16 16 H 1.08003 * 119.99899 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99870 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00409 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47069 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47559 * 119.99816 * 19 17 15 22 22 H 1.48497 * 109.47224 * 239.99977 * 19 17 15 23 23 C 1.46496 * 120.00068 * 359.97438 * 13 11 10 24 24 C 1.53008 * 109.46709 * 90.00235 * 23 13 11 25 25 C 1.47205 * 109.46700 * 179.97438 * 24 23 13 26 26 N 9.35164 * 163.30104 * 262.09899 * 3 1 2 27 27 C 1.47906 * 105.81645 * 39.20833 * 9 8 7 28 28 H 1.09003 * 109.47512 * 60.00013 * 1 2 3 29 29 H 1.09003 * 109.47272 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47298 * 299.99674 * 1 2 3 31 31 H 1.08999 * 110.72465 * 259.23386 * 7 5 3 32 32 H 1.09004 * 110.72424 * 22.34070 * 7 5 3 33 33 H 1.08995 * 110.66363 * 81.02624 * 8 7 5 34 34 H 1.09004 * 110.66427 * 204.15338 * 8 7 5 35 35 H 1.09002 * 109.47199 * 172.60745 * 10 9 8 36 36 H 1.09006 * 109.47203 * 292.60633 * 10 9 8 37 37 H 1.09000 * 109.46631 * 209.99274 * 14 13 11 38 38 H 1.08998 * 109.47566 * 329.99773 * 14 13 11 39 39 H 0.96998 * 120.00116 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.47261 * 210.00021 * 23 13 11 41 41 H 1.08994 * 109.47152 * 330.00618 * 23 13 11 42 42 H 1.08993 * 109.47608 * 299.99952 * 24 23 13 43 43 H 1.09003 * 109.46724 * 60.00181 * 24 23 13 44 44 H 1.08998 * 109.91583 * 215.31824 * 27 9 8 45 45 H 1.09004 * 109.91554 * 94.02407 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 9 4.0967 0.4216 0.9730 7 6 4.1222 0.9109 -1.3964 8 6 5.2902 1.9130 -1.5761 9 7 4.7705 3.1564 -0.9518 10 6 5.8684 4.0637 -0.5923 11 6 6.7487 4.2882 -1.7946 12 8 6.4874 3.7455 -2.8473 13 7 7.8269 5.0914 -1.6999 14 6 8.6829 5.3092 -2.8687 15 6 8.1793 6.4983 -3.6455 16 1 7.3084 7.0376 -3.3030 17 6 8.8303 6.8978 -4.7933 18 7 9.8911 6.2415 -5.2101 19 14 8.2057 8.3713 -5.7566 20 1 7.0061 8.9307 -5.0832 21 1 9.2671 9.4079 -5.8193 22 1 7.8467 7.9466 -7.1335 23 6 8.1428 5.7465 -0.4282 24 6 9.0621 4.8431 0.3963 25 6 9.3800 5.5016 1.6739 26 7 9.6237 6.0105 2.6616 27 6 4.0257 2.7231 0.2503 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.4889 -0.1154 -1.4100 32 1 3.3627 1.0579 -2.1644 33 1 6.1807 1.5634 -1.0539 34 1 5.5009 2.0725 -2.6336 35 1 5.4578 5.0170 -0.2595 36 1 6.4570 3.6212 0.2114 37 1 9.7053 5.4963 -2.5403 38 1 8.6617 4.4243 -3.5046 39 1 10.3488 6.5223 -6.0178 40 1 8.6441 6.6946 -0.6226 41 1 7.2216 5.9293 0.1250 42 1 8.5608 3.8950 0.5907 43 1 9.9833 4.6603 -0.1570 44 1 3.1591 3.3665 0.4022 45 1 4.6767 2.7601 1.1238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267733987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = -136.817304 kcal Electronic energy + Delta-G solvation = -30191.240049 eV Core-core repulsion = 25737.625636 eV Total energy + Delta-G solvation = -4453.614413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.14782 -41.77534 -41.01268 -39.11588 -37.93306 -37.63276 -36.59666 -34.86485 -33.34961 -32.12675 -30.29260 -29.83818 -28.78494 -27.38426 -25.29357 -24.67964 -23.91246 -22.67479 -21.39014 -19.98522 -19.48923 -18.78764 -18.33440 -18.28319 -17.88698 -17.78197 -17.30745 -16.77266 -16.47725 -16.22937 -16.11362 -15.72843 -15.53303 -15.39298 -15.07587 -14.82185 -14.57659 -14.35377 -14.26683 -14.10436 -13.72307 -13.61104 -13.53218 -13.32840 -13.18317 -13.04229 -12.94367 -12.78669 -12.72467 -12.55875 -12.47904 -12.44106 -12.18727 -12.07680 -11.92055 -11.81472 -11.61379 -11.50867 -10.56485 -10.36141 -9.53233 -9.35162 -8.15780 -6.26981 0.75911 1.32412 1.40207 1.43525 1.53367 1.69632 1.85148 1.90519 2.22375 2.44976 2.79349 2.90640 3.05849 3.15532 3.19823 3.30432 3.65010 3.75577 4.02119 4.10842 4.13397 4.15546 4.23820 4.26388 4.29886 4.41810 4.52036 4.61406 4.66902 4.68354 4.75252 4.85877 4.88221 5.07970 5.08837 5.12061 5.17856 5.38040 5.65143 5.73536 5.78648 5.93055 6.16602 6.37905 6.62575 6.78295 6.85594 7.38174 7.56877 8.90817 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.002964 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.513674 B = 9443.010881 C =11151.629968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.353 6.353 3 C 0.458 3.542 4 O -0.503 6.503 5 C 0.126 3.874 6 F -0.179 7.179 7 C -0.131 4.131 8 C 0.034 3.966 9 N -0.515 5.515 10 C 0.031 3.969 11 C 0.503 3.497 12 O -0.566 6.566 13 N -0.597 5.597 14 C 0.262 3.738 15 C -0.536 4.536 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.926 5.926 19 Si 0.954 3.046 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.286 1.286 23 C 0.112 3.888 24 C -0.037 4.037 25 C 0.245 3.755 26 N -0.490 5.490 27 C 0.024 3.976 28 H 0.065 0.935 29 H 0.136 0.864 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.034 0.966 38 H 0.007 0.993 39 H 0.265 0.735 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.136 0.864 43 H 0.121 0.879 44 H 0.110 0.890 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.040 -13.097 13.840 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C 0.299 3.701 4 O -0.391 6.391 5 C 0.106 3.894 6 F -0.160 7.160 7 C -0.169 4.169 8 C -0.093 4.093 9 N -0.240 5.240 10 C -0.099 4.099 11 C 0.292 3.708 12 O -0.445 6.445 13 N -0.328 5.328 14 C 0.140 3.860 15 C -0.575 4.575 16 H 0.070 0.930 17 C -0.187 4.187 18 N -0.566 5.566 19 Si 0.780 3.220 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.212 1.212 23 C -0.013 4.013 24 C -0.078 4.078 25 C -0.072 4.072 26 N -0.168 5.168 27 C -0.104 4.104 28 H 0.084 0.916 29 H 0.154 0.846 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.142 0.858 36 H 0.121 0.879 37 H 0.052 0.948 38 H 0.025 0.975 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.154 0.846 43 H 0.139 0.861 44 H 0.128 0.872 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.228 -12.051 14.296 22.904 hybrid contribution 0.250 0.338 -0.758 0.867 sum -12.978 -11.713 13.538 22.111 Atomic orbital electron populations 1.23690 0.73894 1.06234 1.02977 1.86540 1.25697 1.31669 1.82948 1.23777 0.91714 0.82148 0.72484 1.90699 1.66574 1.36874 1.44934 1.21524 0.85775 0.91683 0.90418 1.92964 1.86770 1.72104 1.64136 1.23191 0.99095 1.02318 0.92255 1.23485 0.95469 0.87345 1.02993 1.64712 1.23042 1.13947 1.22263 1.22424 0.92098 1.00545 0.94850 1.20904 0.81068 0.78661 0.90207 1.90619 1.71341 1.50203 1.32356 1.48055 1.26856 1.46134 1.11769 1.18791 0.89310 0.94916 0.82933 1.21785 1.12568 1.13709 1.09393 0.92991 1.25671 0.95192 0.99632 0.98213 1.70018 1.20506 1.41644 1.24421 0.85563 0.78475 0.79561 0.78387 1.19373 1.20015 1.21184 1.21537 1.00541 0.95893 0.83329 1.19842 1.03755 0.99268 0.84952 1.29233 0.91662 0.92314 0.93986 1.81328 1.10833 1.10762 1.13912 1.23566 1.01384 0.91446 0.93999 0.91575 0.84615 0.91404 0.86264 0.88913 0.92168 0.88432 0.85775 0.87944 0.94770 0.97462 0.92653 0.89820 0.87544 0.84611 0.86111 0.87163 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.56 113.37 1.20 1.49 16 2 O -0.35 -6.55 10.56 -51.38 -0.54 -7.10 16 3 C 0.46 9.94 6.85 71.24 0.49 10.43 16 4 O -0.50 -13.10 15.05 21.95 0.33 -12.77 16 5 C 0.13 2.51 1.63 -10.66 -0.02 2.50 16 6 F -0.18 -3.53 16.83 44.97 0.76 -2.78 16 7 C -0.13 -2.57 6.40 31.80 0.20 -2.37 16 8 C 0.03 0.84 5.30 86.65 0.46 1.30 16 9 N -0.51 -12.71 5.26 -887.56 -4.67 -17.38 16 10 C 0.03 0.69 4.07 85.56 0.35 1.04 16 11 C 0.50 16.86 7.38 87.66 0.65 17.51 16 12 O -0.57 -24.67 13.10 -3.03 -0.04 -24.71 16 13 N -0.60 -20.04 2.46 -826.16 -2.03 -22.07 16 14 C 0.26 12.11 5.16 85.63 0.44 12.55 16 15 C -0.54 -28.34 9.39 25.60 0.24 -28.10 16 16 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 17 C 0.01 0.65 5.46 84.65 0.46 1.11 16 18 N -0.93 -52.92 13.29 21.45 0.28 -52.64 16 19 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 23 C 0.11 2.52 5.17 86.38 0.45 2.96 16 24 C -0.04 -0.60 6.03 28.79 0.17 -0.43 16 25 C 0.25 5.01 15.44 89.43 1.38 6.39 16 26 N -0.49 -13.13 18.55 20.03 0.37 -12.76 16 27 C 0.02 0.47 6.14 86.45 0.53 1.00 16 28 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 29 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 31 H 0.12 1.87 8.12 -2.39 -0.02 1.85 16 32 H 0.09 1.90 7.86 -2.39 -0.02 1.88 16 33 H 0.06 1.32 8.02 -2.39 -0.02 1.30 16 34 H 0.10 3.12 5.97 -2.39 -0.01 3.11 16 35 H 0.12 2.35 7.40 -2.39 -0.02 2.33 16 36 H 0.10 1.47 6.85 -2.38 -0.02 1.45 16 37 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 38 H 0.01 0.39 7.42 -2.39 -0.02 0.38 16 39 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 40 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 41 H 0.11 1.77 6.44 -2.39 -0.02 1.76 16 42 H 0.14 1.45 7.22 -2.39 -0.02 1.43 16 43 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.11 2.37 6.49 -2.39 -0.02 2.35 16 45 H 0.10 1.42 7.45 -2.38 -0.02 1.40 16 Total: -1.00 -75.26 384.96 4.51 -70.75 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 1.02 Total: 8.55 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: 7.00 Total: 27.40 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -6.04 Total: -104.84 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.25 Total: -44.57 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.76 Total: -2.78 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -75.26 4.51 -70.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267733987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.071 kcal (2) G-P(sol) polarization free energy of solvation -75.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds