Wall clock time and date at job start Sat Apr 11 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00337 * 2 1 4 4 H 1.08994 * 109.46746 * 34.23694 * 3 2 1 5 5 C 1.52997 * 109.46821 * 274.23827 * 3 2 1 6 6 N 1.46497 * 109.47449 * 304.87159 * 5 3 2 7 7 S 1.65599 * 120.00180 * 165.50077 * 6 5 3 8 8 O 1.42100 * 104.27627 * 181.06956 * 7 6 5 9 9 O 1.42099 * 104.27687 * 308.92879 * 7 6 5 10 10 C 1.81404 * 104.45127 * 65.00125 * 7 6 5 11 11 C 1.52997 * 109.47344 * 180.02562 * 10 7 6 12 12 C 1.52998 * 109.47244 * 179.97438 * 11 10 7 13 13 C 1.50704 * 109.46775 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00259 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99511 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99877 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46885 * 90.00347 * 17 15 13 19 19 H 1.48495 * 109.47410 * 209.99986 * 17 15 13 20 20 H 1.48503 * 109.47301 * 330.00372 * 17 15 13 21 21 C 1.52998 * 109.46873 * 154.23814 * 3 2 1 22 22 C 1.50697 * 109.47243 * 294.99566 * 21 3 2 23 23 C 1.38237 * 120.00394 * 269.73291 * 22 21 3 24 24 C 1.38239 * 119.99752 * 179.76644 * 23 22 21 25 25 C 1.38224 * 120.00098 * 0.50675 * 24 23 22 26 26 C 1.38246 * 120.00332 * 359.74431 * 25 24 23 27 27 C 1.38236 * 119.99543 * 0.02562 * 26 25 24 28 28 H 1.08994 * 109.46718 * 55.09268 * 1 2 3 29 29 H 1.08995 * 109.47076 * 175.09728 * 1 2 3 30 30 H 1.09002 * 109.46719 * 295.09705 * 1 2 3 31 31 H 1.09003 * 109.46802 * 184.86900 * 5 3 2 32 32 H 1.09005 * 109.47407 * 64.87464 * 5 3 2 33 33 H 0.97001 * 119.99613 * 345.49551 * 6 5 3 34 34 H 1.09005 * 109.46782 * 300.00213 * 10 7 6 35 35 H 1.08992 * 109.47125 * 59.99667 * 10 7 6 36 36 H 1.09001 * 109.46545 * 300.00165 * 11 10 7 37 37 H 1.08999 * 109.47272 * 59.99331 * 11 10 7 38 38 H 1.08993 * 109.47092 * 299.99699 * 12 11 10 39 39 H 1.08997 * 109.46654 * 59.99838 * 12 11 10 40 40 H 0.97004 * 119.99605 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.47551 * 55.00166 * 21 3 2 42 42 H 1.09002 * 109.46695 * 174.99943 * 21 3 2 43 43 H 1.08004 * 119.99575 * 359.97438 * 23 22 21 44 44 H 1.07994 * 119.99373 * 180.22613 * 24 23 22 45 45 H 1.08005 * 119.99988 * 179.72428 * 25 24 23 46 46 H 1.07993 * 119.99859 * 179.97438 * 26 25 24 47 47 H 1.07998 * 119.99779 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3820 1.9829 0.5782 5 6 2.1204 1.8146 -1.4386 6 7 2.8672 0.8452 -2.2440 7 16 2.8383 0.9448 -3.8967 8 8 3.6360 -0.1493 -4.3277 9 8 1.4563 1.0159 -4.2194 10 6 3.6608 2.5180 -4.2699 11 6 3.6970 2.7279 -5.7850 12 6 4.3901 4.0550 -6.0996 13 6 4.4263 4.2613 -7.5921 14 1 3.9981 3.5198 -8.2502 15 6 5.0060 5.3968 -8.1171 16 7 5.5278 6.2995 -7.3156 17 14 5.0515 5.6523 -9.9670 18 1 3.8293 6.3782 -10.3966 19 1 6.2522 6.4481 -10.3275 20 1 5.1089 4.3336 -10.6476 21 6 3.4045 1.2428 0.6270 22 6 3.2854 0.8595 2.0795 23 6 3.1541 1.8404 3.0447 24 6 3.0399 1.4884 4.3767 25 6 3.0677 0.1563 4.7444 26 6 3.2042 -0.8245 3.7796 27 6 3.3136 -0.4728 2.4472 28 1 -0.3632 0.5881 -0.8427 29 1 -0.3633 -1.0239 -0.0878 30 1 -0.3633 0.4359 0.9307 31 1 2.6417 2.7718 -1.4462 32 1 1.1217 1.9416 -1.8565 33 1 3.3787 0.1451 -1.8091 34 1 3.1107 3.3353 -3.8033 35 1 4.6789 2.4969 -3.8812 36 1 4.2468 1.9107 -6.2518 37 1 2.6787 2.7491 -6.1733 38 1 3.8399 4.8719 -5.6328 39 1 5.4084 4.0341 -5.7113 40 1 5.9360 7.0982 -7.6850 41 1 4.0055 0.4995 0.1031 42 1 3.8831 2.2189 0.5468 43 1 3.1373 2.8815 2.7578 44 1 2.9337 2.2546 5.1303 45 1 2.9830 -0.1185 5.7854 46 1 3.2263 -1.8652 4.0670 47 1 3.4207 -1.2388 1.6936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295308542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:08 Heat of formation + Delta-G solvation = -114.677779 kcal Electronic energy + Delta-G solvation = -27148.814569 eV Core-core repulsion = 23230.080623 eV Total energy + Delta-G solvation = -3918.733946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.87499 -38.53238 -36.85221 -35.72589 -35.17671 -34.67206 -33.28138 -32.19093 -31.14512 -29.64796 -27.81093 -26.79484 -26.15394 -23.72738 -22.82616 -22.22337 -21.06238 -20.67509 -19.22846 -17.67399 -17.26472 -16.94808 -16.66678 -16.16913 -15.77965 -15.67553 -15.43391 -15.23111 -15.00049 -14.67720 -14.49629 -14.07826 -13.80711 -13.67492 -13.47487 -13.07289 -12.81250 -12.58597 -12.39622 -12.28239 -12.00950 -11.92464 -11.80041 -11.75864 -11.68317 -11.36907 -11.23566 -11.22047 -11.10019 -10.92817 -10.85137 -10.43173 -9.95893 -9.93094 -9.68824 -9.31694 -9.17508 -9.07799 -8.95023 -8.41582 -6.06646 -4.09557 0.49241 1.07186 1.15005 2.86547 3.29893 3.36054 3.40274 3.43184 3.56536 3.97689 4.22622 4.41863 4.42958 4.54431 4.58675 4.70164 4.78467 4.81126 4.89047 5.07843 5.11243 5.11872 5.17373 5.20909 5.23914 5.25788 5.29971 5.41199 5.45530 5.49315 5.58191 5.71726 5.79995 5.80329 5.89159 6.19403 6.25419 6.26672 6.36282 6.44596 6.73754 6.84349 6.87099 7.01754 7.55965 7.65982 7.91501 8.32096 8.96707 9.55169 11.04555 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018855 B = 0.002104 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.630306 B =13307.062850 C =14146.047562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.090 3.910 4 H 0.075 0.925 5 C 0.090 3.910 6 N -1.115 6.115 7 S 2.602 3.398 8 O -0.963 6.963 9 O -0.964 6.964 10 C -0.610 4.610 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.082 4.082 22 C -0.079 4.079 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.122 4.122 27 C -0.099 4.099 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.416 0.584 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.125 -10.678 25.490 28.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C 0.031 3.969 4 H 0.093 0.907 5 C -0.038 4.038 6 N -0.874 5.874 7 S 2.698 3.302 8 O -0.954 6.954 9 O -0.954 6.954 10 C -0.741 4.741 11 C -0.145 4.145 12 C -0.008 4.008 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.119 4.119 22 C -0.079 4.079 23 C -0.138 4.138 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.140 4.140 27 C -0.117 4.117 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.251 0.749 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.430 -11.203 24.846 28.249 hybrid contribution 0.382 0.845 -0.455 1.033 sum -7.048 -10.358 24.391 27.420 Atomic orbital electron populations 1.22798 0.80969 1.02997 0.99954 1.87929 1.19706 1.26550 1.94838 1.22272 0.94854 0.86006 0.93785 0.90666 1.21864 0.97422 0.91912 0.92572 1.55510 1.64184 1.41938 1.25804 1.05248 0.75263 0.77289 0.72435 1.93577 1.71730 1.50246 1.79802 1.93556 1.31928 1.87528 1.82369 1.30555 1.13926 1.20863 1.08800 1.21495 1.02458 1.03554 0.87033 1.19060 0.95508 0.89472 0.96722 1.21260 1.37945 1.05207 0.92013 0.92364 1.25025 0.95246 0.95961 0.98194 1.69959 1.38772 1.10028 1.34695 0.86549 0.77542 0.78296 0.85387 1.20582 1.21176 1.19738 1.20751 0.95814 1.03597 0.91731 1.19772 0.99652 0.93526 0.94905 1.21083 1.00680 0.99104 0.92897 1.21110 1.00561 0.96272 0.96111 1.21142 1.00728 0.93195 0.99343 1.21170 1.00304 0.99338 0.93216 1.21096 0.98767 0.95817 0.96008 0.93516 0.89665 0.94218 0.90502 0.89935 0.74864 0.85630 0.85273 0.91576 0.91610 0.96160 0.96120 0.92907 0.89653 0.88937 0.86109 0.86274 0.86411 0.86267 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.80 101.05 1.09 1.33 16 2 O -0.37 -3.50 9.57 -35.23 -0.34 -3.83 16 3 C 0.09 0.70 2.36 -26.73 -0.06 0.64 16 4 H 0.08 0.50 7.88 -51.93 -0.41 0.09 16 5 C 0.09 0.78 5.82 -4.04 -0.02 0.75 16 6 N -1.11 -11.76 5.55 -10.61 -0.06 -11.82 16 7 S 2.60 37.64 5.46 -107.50 -0.59 37.05 16 8 O -0.96 -16.99 18.08 -57.54 -1.04 -18.03 16 9 O -0.96 -16.76 17.50 -57.54 -1.01 -17.77 16 10 C -0.61 -9.08 6.07 37.16 0.23 -8.86 16 11 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16 12 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 13 C -0.53 -14.78 9.11 -34.44 -0.31 -15.10 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 17 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.08 -0.59 4.87 -27.89 -0.14 -0.72 16 22 C -0.08 -0.64 4.97 -104.62 -0.52 -1.16 16 23 C -0.12 -0.90 9.70 -39.58 -0.38 -1.29 16 24 C -0.12 -0.89 10.05 -39.59 -0.40 -1.29 16 25 C -0.13 -0.92 10.05 -39.58 -0.40 -1.32 16 26 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 27 C -0.10 -0.83 9.40 -39.58 -0.37 -1.21 16 28 H 0.05 0.38 7.54 -51.93 -0.39 -0.01 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.76 7.18 -51.93 -0.37 0.39 16 33 H 0.42 3.94 7.38 -34.47 -0.25 3.69 16 34 H 0.13 1.62 8.14 -51.92 -0.42 1.20 16 35 H 0.13 1.71 8.14 -51.93 -0.42 1.29 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.08 0.62 6.97 -51.93 -0.36 0.26 16 42 H 0.09 0.54 8.08 -51.93 -0.42 0.12 16 43 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 47 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 403.80 15.07 6.09 6.09 Total: -1.00 -36.05 403.80 -10.96 -47.01 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.67 Total: 0.18 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: -2.06 Total: -29.68 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.68 Total: -37.56 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -2.38 Total: -39.63 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 37.64 SS G_CDS: -0.59 Total: 37.05 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.05 -10.96 -47.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295308542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.664 kcal (2) G-P(sol) polarization free energy of solvation -36.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds