Wall clock time and date at job start Sat Apr 11 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99835 * 2 1 4 4 H 1.09005 * 109.47346 * 30.00268 * 3 2 1 5 5 C 1.53001 * 109.47278 * 149.99894 * 3 2 1 6 6 N 1.46498 * 109.47089 * 299.99952 * 5 3 2 7 7 S 1.65602 * 119.99612 * 164.71987 * 6 5 3 8 8 O 1.42109 * 104.27511 * 181.34803 * 7 6 5 9 9 O 1.42098 * 104.28120 * 309.20801 * 7 6 5 10 10 C 1.81394 * 104.44973 * 65.28269 * 7 6 5 11 11 C 1.53003 * 109.47387 * 179.97438 * 10 7 6 12 12 C 1.53002 * 109.47130 * 179.97438 * 11 10 7 13 13 C 1.50692 * 109.47012 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00112 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00231 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99857 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00269 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47359 * 89.99846 * 17 15 13 19 19 H 1.48501 * 109.47327 * 209.99977 * 17 15 13 20 20 H 1.48504 * 109.47444 * 330.00170 * 17 15 13 21 21 C 1.53003 * 109.47177 * 270.00198 * 3 2 1 22 22 C 1.50696 * 109.46982 * 64.99863 * 21 3 2 23 23 C 1.38236 * 120.00044 * 269.72591 * 22 21 3 24 24 C 1.38237 * 119.99870 * 179.77029 * 23 22 21 25 25 C 1.38236 * 119.99943 * 0.50627 * 24 23 22 26 26 C 1.38241 * 119.99956 * 359.74881 * 25 24 23 27 27 C 1.38231 * 119.99887 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.46890 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47318 * 299.99383 * 1 2 3 30 30 H 1.09000 * 109.47064 * 60.00077 * 1 2 3 31 31 H 1.08996 * 109.47377 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.46886 * 60.00247 * 5 3 2 33 33 H 0.97001 * 120.00384 * 345.00465 * 6 5 3 34 34 H 1.09009 * 109.47044 * 299.99503 * 10 7 6 35 35 H 1.09001 * 109.47747 * 59.99183 * 10 7 6 36 36 H 1.09000 * 109.46375 * 299.99213 * 11 10 7 37 37 H 1.08993 * 109.47045 * 59.99537 * 11 10 7 38 38 H 1.09003 * 109.47270 * 300.00013 * 12 11 10 39 39 H 1.09000 * 109.46896 * 60.00012 * 12 11 10 40 40 H 0.96993 * 120.00008 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.47074 * 185.00068 * 21 3 2 42 42 H 1.08994 * 109.46872 * 304.99815 * 21 3 2 43 43 H 1.07997 * 119.99593 * 359.97438 * 23 22 21 44 44 H 1.07995 * 119.99727 * 180.22912 * 24 23 22 45 45 H 1.07998 * 119.99644 * 179.72545 * 25 24 23 46 46 H 1.08007 * 119.99419 * 179.97438 * 26 25 24 47 47 H 1.08001 * 119.99600 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3589 1.2633 0.7213 6 7 3.1602 0.8173 2.1025 7 16 4.4550 0.3149 3.0046 8 8 3.8875 -0.0647 4.2509 9 8 5.1102 -0.6370 2.1776 10 6 5.4767 1.8014 3.1969 11 6 6.7189 1.4630 4.0235 12 6 7.5809 2.7167 4.1851 13 6 8.8041 2.3836 4.9998 14 1 8.9521 1.3782 5.3654 15 6 9.7349 3.3621 5.2777 16 7 9.5550 4.5864 4.8321 17 14 11.2515 2.9491 6.2870 18 1 12.3454 2.5144 5.3816 19 1 11.6842 4.1506 7.0448 20 1 10.9307 1.8537 7.2370 21 6 2.2176 1.7714 -1.4425 22 6 0.8790 1.9309 -2.1162 23 6 0.3139 0.8654 -2.7917 24 6 -0.9161 1.0103 -3.4056 25 6 -1.5762 2.2238 -3.3530 26 6 -1.0086 3.2908 -2.6819 27 6 0.2188 3.1442 -2.0632 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8020 2.2592 0.7217 32 1 4.0241 0.5695 0.2074 33 1 2.2698 0.8122 2.4873 34 1 5.7809 2.1627 2.2145 35 1 4.9013 2.5745 3.7061 36 1 6.4142 1.1020 5.0058 37 1 7.2944 0.6899 3.5146 38 1 7.8855 3.0774 3.2027 39 1 7.0055 3.4901 4.6939 40 1 10.2096 5.2748 5.0279 41 1 2.7412 2.7274 -1.4438 42 1 2.8098 1.0320 -1.9815 43 1 0.8319 -0.0811 -2.8370 44 1 -1.3593 0.1768 -3.9302 45 1 -2.5351 2.3382 -3.8364 46 1 -1.5242 4.2390 -2.6412 47 1 0.6624 3.9780 -1.5393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295308544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:10 Heat of formation + Delta-G solvation = -109.849827 kcal Electronic energy + Delta-G solvation = -27051.251361 eV Core-core repulsion = 23132.726771 eV Total energy + Delta-G solvation = -3918.524590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.22530 -38.33988 -36.83844 -35.70871 -35.16223 -34.66086 -33.41696 -32.18205 -31.32973 -30.05388 -27.80228 -26.58588 -25.84467 -23.72097 -22.96971 -22.37497 -21.32370 -20.62109 -19.13761 -17.57781 -17.31713 -17.01795 -16.70224 -16.41463 -15.83225 -15.64167 -15.52291 -15.27525 -15.05583 -14.52575 -14.49042 -14.09226 -13.80668 -13.73145 -13.41721 -13.10182 -13.00156 -12.61822 -12.54203 -12.26716 -11.92895 -11.89247 -11.81180 -11.76426 -11.72607 -11.46136 -11.26198 -11.21471 -10.98433 -10.91923 -10.84066 -10.41967 -10.18322 -9.94592 -9.69906 -9.31655 -9.27501 -9.07989 -8.83059 -8.40732 -6.05853 -4.08678 0.49717 0.94091 1.00600 2.87939 3.30643 3.35755 3.36730 3.41012 3.44934 3.99933 4.20020 4.42638 4.45139 4.46390 4.61595 4.64106 4.70807 4.77396 4.80197 5.00351 5.09096 5.11509 5.14031 5.19183 5.21983 5.28385 5.30706 5.32606 5.36979 5.50499 5.57287 5.64835 5.67218 5.81593 5.90519 6.08282 6.13823 6.23130 6.28018 6.45828 6.60973 6.86770 6.88706 6.95183 7.56900 7.66952 7.92374 8.33071 8.97605 9.55998 11.05383 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.002006 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.192228 B =13952.134418 C =14864.312659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.370 6.370 3 C 0.090 3.910 4 H 0.070 0.930 5 C 0.116 3.884 6 N -1.119 6.119 7 S 2.603 3.397 8 O -0.964 6.964 9 O -0.960 6.960 10 C -0.610 4.610 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.108 4.108 22 C -0.083 4.083 23 C -0.106 4.106 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.118 4.118 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.414 0.586 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.196 -3.099 -17.313 29.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.289 6.289 3 C 0.031 3.969 4 H 0.088 0.912 5 C -0.011 4.011 6 N -0.877 5.877 7 S 2.698 3.302 8 O -0.954 6.954 9 O -0.950 6.950 10 C -0.742 4.742 11 C -0.146 4.146 12 C -0.008 4.008 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.146 4.146 22 C -0.083 4.083 23 C -0.124 4.124 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.136 4.136 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.248 0.752 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.704 -3.997 -17.082 29.489 hybrid contribution 0.250 0.926 0.473 1.069 sum -23.454 -3.071 -16.608 28.903 Atomic orbital electron populations 1.23195 0.81288 1.02913 1.00943 1.87987 1.19483 1.26518 1.94897 1.22269 0.94623 0.85834 0.94193 0.91211 1.21455 0.97179 1.00744 0.81679 1.55539 1.24318 1.85229 1.22585 1.05255 0.74322 0.77172 0.73422 1.93576 1.76328 1.81890 1.43630 1.93569 1.75839 1.57592 1.67990 1.30563 1.13069 1.20154 1.10384 1.21499 0.92485 1.03023 0.97547 1.19062 0.93543 0.90749 0.97422 1.21262 1.05644 0.96130 1.33375 0.92353 1.25024 0.98375 0.95000 0.96031 1.69954 1.35955 1.01656 1.45901 0.86549 0.83022 0.77908 0.80283 1.20573 1.21191 1.19746 1.21188 0.94525 1.03424 0.95510 1.19835 0.96473 0.93771 0.98246 1.21108 0.95666 0.98728 0.96860 1.21180 0.95413 0.97686 0.99905 1.21174 1.00029 0.93354 0.99637 1.21158 0.95764 0.98914 0.97989 1.21113 0.95426 0.97111 0.99980 0.89911 0.94417 0.92229 0.90134 0.89118 0.75242 0.85553 0.85327 0.91571 0.91537 0.96130 0.96143 0.92916 0.89281 0.89305 0.85635 0.86055 0.86219 0.86086 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 10.24 101.05 1.03 1.14 16 2 O -0.37 -3.69 10.08 -35.23 -0.36 -4.04 16 3 C 0.09 0.73 2.40 -26.73 -0.06 0.67 16 4 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 5 C 0.12 1.06 5.83 -4.04 -0.02 1.04 16 6 N -1.12 -12.17 5.75 -10.61 -0.06 -12.23 16 7 S 2.60 38.32 5.46 -107.50 -0.59 37.73 16 8 O -0.96 -17.17 18.08 -57.54 -1.04 -18.21 16 9 O -0.96 -17.15 17.48 -57.54 -1.01 -18.15 16 10 C -0.61 -9.15 6.08 37.16 0.23 -8.93 16 11 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 12 C 0.03 0.77 4.97 -27.89 -0.14 0.63 16 13 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.50 13.29 55.43 0.74 -25.77 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.11 -0.75 5.06 -27.88 -0.14 -0.89 16 22 C -0.08 -0.61 3.87 -104.63 -0.41 -1.01 16 23 C -0.11 -0.76 6.83 -39.58 -0.27 -1.03 16 24 C -0.12 -0.81 9.94 -39.58 -0.39 -1.20 16 25 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 26 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 27 C -0.12 -0.81 9.70 -39.58 -0.38 -1.19 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 30 H 0.06 0.44 3.85 -51.93 -0.20 0.24 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.91 7.68 -51.93 -0.40 0.51 16 33 H 0.41 3.94 8.62 -34.47 -0.30 3.64 16 34 H 0.13 1.64 8.14 -51.92 -0.42 1.22 16 35 H 0.13 1.72 8.14 -51.92 -0.42 1.29 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 41 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 42 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.12 0.54 8.06 -52.49 -0.42 0.11 16 46 H 0.12 0.58 8.06 -52.48 -0.42 0.15 16 47 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 399.41 15.07 6.02 6.02 Total: -1.00 -36.28 399.41 -10.82 -47.10 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.60 Total: -0.03 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: -1.90 Total: -29.00 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.68 Total: -37.99 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -2.40 Total: -40.40 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 38.32 SS G_CDS: -0.59 Total: 37.73 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.28 -10.82 -47.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295308544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.750 kcal (2) G-P(sol) polarization free energy of solvation -36.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds