Wall clock time and date at job start Sat Apr 11 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99835 * 2 1 4 4 H 1.09005 * 109.47346 * 30.00268 * 3 2 1 5 5 C 1.53001 * 109.47278 * 149.99894 * 3 2 1 6 6 N 1.46498 * 109.47089 * 299.99952 * 5 3 2 7 7 S 1.65602 * 119.99612 * 164.71987 * 6 5 3 8 8 O 1.42109 * 104.27511 * 181.34803 * 7 6 5 9 9 O 1.42098 * 104.28120 * 309.20801 * 7 6 5 10 10 C 1.81394 * 104.44973 * 65.28269 * 7 6 5 11 11 C 1.53003 * 109.47387 * 179.97438 * 10 7 6 12 12 C 1.53002 * 109.47130 * 179.97438 * 11 10 7 13 13 C 1.50692 * 109.47012 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00112 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00231 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99857 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00269 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47359 * 89.99846 * 17 15 13 19 19 H 1.48501 * 109.47327 * 209.99977 * 17 15 13 20 20 H 1.48504 * 109.47444 * 330.00170 * 17 15 13 21 21 C 1.53003 * 109.47177 * 270.00198 * 3 2 1 22 22 C 1.50696 * 109.46982 * 64.99863 * 21 3 2 23 23 C 1.38236 * 120.00044 * 269.72591 * 22 21 3 24 24 C 1.38237 * 119.99870 * 179.77029 * 23 22 21 25 25 C 1.38236 * 119.99943 * 0.50627 * 24 23 22 26 26 C 1.38241 * 119.99956 * 359.74881 * 25 24 23 27 27 C 1.38231 * 119.99887 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.46890 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47318 * 299.99383 * 1 2 3 30 30 H 1.09000 * 109.47064 * 60.00077 * 1 2 3 31 31 H 1.08996 * 109.47377 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.46886 * 60.00247 * 5 3 2 33 33 H 0.97001 * 120.00384 * 345.00465 * 6 5 3 34 34 H 1.09009 * 109.47044 * 299.99503 * 10 7 6 35 35 H 1.09001 * 109.47747 * 59.99183 * 10 7 6 36 36 H 1.09000 * 109.46375 * 299.99213 * 11 10 7 37 37 H 1.08993 * 109.47045 * 59.99537 * 11 10 7 38 38 H 1.09003 * 109.47270 * 300.00013 * 12 11 10 39 39 H 1.09000 * 109.46896 * 60.00012 * 12 11 10 40 40 H 0.96993 * 120.00008 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.47074 * 185.00068 * 21 3 2 42 42 H 1.08994 * 109.46872 * 304.99815 * 21 3 2 43 43 H 1.07997 * 119.99593 * 359.97438 * 23 22 21 44 44 H 1.07995 * 119.99727 * 180.22912 * 24 23 22 45 45 H 1.07998 * 119.99644 * 179.72545 * 25 24 23 46 46 H 1.08007 * 119.99419 * 179.97438 * 26 25 24 47 47 H 1.08001 * 119.99600 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3589 1.2633 0.7213 6 7 3.1602 0.8173 2.1025 7 16 4.4550 0.3149 3.0046 8 8 3.8875 -0.0647 4.2509 9 8 5.1102 -0.6370 2.1776 10 6 5.4767 1.8014 3.1969 11 6 6.7189 1.4630 4.0235 12 6 7.5809 2.7167 4.1851 13 6 8.8041 2.3836 4.9998 14 1 8.9521 1.3782 5.3654 15 6 9.7349 3.3621 5.2777 16 7 9.5550 4.5864 4.8321 17 14 11.2515 2.9491 6.2870 18 1 12.3454 2.5144 5.3816 19 1 11.6842 4.1506 7.0448 20 1 10.9307 1.8537 7.2370 21 6 2.2176 1.7714 -1.4425 22 6 0.8790 1.9309 -2.1162 23 6 0.3139 0.8654 -2.7917 24 6 -0.9161 1.0103 -3.4056 25 6 -1.5762 2.2238 -3.3530 26 6 -1.0086 3.2908 -2.6819 27 6 0.2188 3.1442 -2.0632 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8020 2.2592 0.7217 32 1 4.0241 0.5695 0.2074 33 1 2.2698 0.8122 2.4873 34 1 5.7809 2.1627 2.2145 35 1 4.9013 2.5745 3.7061 36 1 6.4142 1.1020 5.0058 37 1 7.2944 0.6899 3.5146 38 1 7.8855 3.0774 3.2027 39 1 7.0055 3.4901 4.6939 40 1 10.2096 5.2748 5.0279 41 1 2.7412 2.7274 -1.4438 42 1 2.8098 1.0320 -1.9815 43 1 0.8319 -0.0811 -2.8370 44 1 -1.3593 0.1768 -3.9302 45 1 -2.5351 2.3382 -3.8364 46 1 -1.5242 4.2390 -2.6412 47 1 0.6624 3.9780 -1.5393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295308544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:09 Heat of formation + Delta-G solvation = -134.831718 kcal Electronic energy + Delta-G solvation = -27052.334657 eV Core-core repulsion = 23132.726771 eV Total energy + Delta-G solvation = -3919.607886 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.75100 -38.94260 -38.14566 -37.02243 -36.44611 -35.99100 -34.14792 -33.98022 -31.79793 -30.67556 -29.63381 -27.17787 -26.50372 -25.60586 -23.43891 -23.00342 -22.41819 -21.80013 -20.28204 -18.71747 -18.51359 -17.94766 -17.68881 -17.36748 -17.09860 -16.53857 -16.43378 -16.34835 -15.89807 -15.78625 -15.56392 -15.05297 -14.58080 -14.46475 -14.24604 -14.02906 -13.92564 -13.77286 -13.60089 -13.48538 -13.22286 -13.15428 -13.07125 -12.96083 -12.74870 -12.69155 -12.60573 -12.45524 -12.14203 -11.96625 -11.76632 -11.72680 -11.58350 -11.36166 -11.10558 -10.79789 -10.56413 -10.33629 -9.75315 -9.35524 -8.22061 -6.32521 -0.71085 0.45523 0.52662 1.40751 1.41178 1.52597 1.82419 2.40399 2.76317 2.85804 2.90356 3.11482 3.27085 3.65099 3.75778 3.96070 3.97375 4.07785 4.14364 4.18601 4.24009 4.34121 4.42114 4.48676 4.51903 4.55899 4.64685 4.67720 4.68434 4.72454 4.83660 4.93080 4.93793 4.99428 5.06911 5.09301 5.20659 5.25662 5.46965 5.61707 5.65233 5.67251 5.74123 5.80836 6.10038 6.15134 6.21247 6.29897 6.83068 7.36538 8.89274 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.002006 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.192228 B =13952.134418 C =14864.312659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.394 6.394 3 C 0.092 3.908 4 H 0.083 0.917 5 C 0.104 3.896 6 N -1.105 6.105 7 S 2.631 3.369 8 O -0.996 6.996 9 O -0.992 6.992 10 C -0.606 4.606 11 C -0.108 4.108 12 C 0.031 3.969 13 C -0.552 4.552 14 H 0.059 0.941 15 C 0.003 3.997 16 N -0.928 5.928 17 Si 0.962 3.038 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.105 4.105 22 C -0.092 4.092 23 C -0.118 4.118 24 C -0.131 4.131 25 C -0.131 4.131 26 C -0.128 4.128 27 C -0.126 4.126 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.423 0.577 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.005 0.995 39 H 0.004 0.996 40 H 0.265 0.735 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.121 0.879 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.952 -2.584 -17.741 30.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.313 6.313 3 C 0.032 3.968 4 H 0.101 0.899 5 C -0.022 4.022 6 N -0.866 5.866 7 S 2.726 3.274 8 O -0.986 6.986 9 O -0.982 6.982 10 C -0.738 4.738 11 C -0.147 4.147 12 C -0.007 4.007 13 C -0.591 4.591 14 H 0.077 0.923 15 C -0.196 4.196 16 N -0.568 5.568 17 Si 0.786 3.214 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.190 1.190 21 C -0.143 4.143 22 C -0.092 4.092 23 C -0.136 4.136 24 C -0.149 4.149 25 C -0.149 4.149 26 C -0.146 4.146 27 C -0.144 4.144 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.259 0.741 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.024 0.976 39 H 0.022 0.978 40 H 0.074 0.926 41 H 0.124 0.876 42 H 0.100 0.900 43 H 0.139 0.861 44 H 0.152 0.848 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.468 -3.491 -17.508 30.289 hybrid contribution 0.409 0.790 0.533 1.037 sum -24.060 -2.701 -16.975 29.569 Atomic orbital electron populations 1.23267 0.80502 1.03300 1.01442 1.87954 1.20485 1.27784 1.95060 1.22334 0.94073 0.85478 0.94885 0.89893 1.21794 0.98041 1.02054 0.80312 1.55127 1.23501 1.85019 1.22993 1.04173 0.74225 0.76460 0.72515 1.93528 1.76972 1.82551 1.45550 1.93529 1.76990 1.59022 1.68654 1.30486 1.11148 1.21105 1.11018 1.21319 0.94064 1.00634 0.98687 1.18962 0.93429 0.92470 0.95840 1.21752 1.07050 0.96340 1.33916 0.92292 1.25919 1.01595 0.94879 0.97168 1.70060 1.37175 1.02580 1.47031 0.85494 0.79125 0.77932 0.78804 1.19738 1.20531 1.19042 1.21166 0.94580 1.04023 0.94575 1.19910 0.96688 0.94051 0.98588 1.21180 0.96156 0.98730 0.97489 1.21392 0.95275 0.98392 0.99854 1.21445 1.00715 0.93187 0.99528 1.21433 0.95806 0.99677 0.97690 1.21320 0.95675 0.97290 1.00151 0.89703 0.93833 0.91768 0.87059 0.90193 0.74122 0.83216 0.83324 0.91759 0.91584 0.97613 0.97787 0.92642 0.87604 0.89986 0.86106 0.84845 0.84589 0.84554 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.24 113.37 1.16 1.32 16 2 O -0.39 -7.45 10.08 -148.98 -1.50 -8.95 16 3 C 0.09 1.32 2.40 30.60 0.07 1.40 16 4 H 0.08 0.98 7.79 -2.38 -0.02 0.96 16 5 C 0.10 1.69 5.83 86.38 0.50 2.20 16 6 N -1.11 -22.11 5.75 -187.50 -1.08 -23.18 16 7 S 2.63 74.73 5.46 -56.49 -0.31 74.43 16 8 O -1.00 -34.79 18.08 -127.65 -2.31 -37.10 16 9 O -0.99 -34.92 17.48 -127.65 -2.23 -37.15 16 10 C -0.61 -17.30 6.08 71.98 0.44 -16.86 16 11 C -0.11 -4.32 5.16 30.60 0.16 -4.17 16 12 C 0.03 1.59 4.97 29.85 0.15 1.74 16 13 C -0.55 -31.34 9.11 25.60 0.23 -31.10 16 14 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 15 C 0.00 0.15 5.46 84.66 0.46 0.61 16 16 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 17 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 C -0.11 -1.30 5.06 29.85 0.15 -1.15 16 22 C -0.09 -1.23 3.87 -19.87 -0.08 -1.30 16 23 C -0.12 -1.62 6.83 22.27 0.15 -1.47 16 24 C -0.13 -1.57 9.94 22.27 0.22 -1.35 16 25 C -0.13 -1.44 10.05 22.27 0.22 -1.21 16 26 C -0.13 -1.42 10.05 22.27 0.22 -1.20 16 27 C -0.13 -1.51 9.70 22.27 0.22 -1.29 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 0.58 8.08 -2.39 -0.02 0.56 16 30 H 0.06 0.89 3.85 -2.39 -0.01 0.88 16 31 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.51 7.68 -2.39 -0.02 1.49 16 33 H 0.42 7.27 8.62 -96.74 -0.83 6.43 16 34 H 0.15 3.55 8.14 -2.39 -0.02 3.54 16 35 H 0.15 3.66 8.14 -2.39 -0.02 3.64 16 36 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 41 H 0.11 0.91 8.09 -2.39 -0.02 0.89 16 42 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 43 H 0.12 1.70 8.06 -2.91 -0.02 1.67 16 44 H 0.13 1.16 8.06 -2.91 -0.02 1.13 16 45 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 46 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 47 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -77.67 399.41 -0.71 -78.38 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.12 Total: 16.21 kcal Atomic # 6 Polarization: -58.13 SS G_CDS: 4.29 Total: -53.84 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -0.79 Total: -78.14 kcal Atomic # 8 Polarization: -77.17 SS G_CDS: -6.04 Total: -83.21 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 74.73 SS G_CDS: -0.31 Total: 74.43 kcal Total: -77.67 -0.71 -78.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295308544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.450 kcal (2) G-P(sol) polarization free energy of solvation -77.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds