Wall clock time and date at job start Sat Apr 11 2020 06:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99820 * 2 1 4 4 C 1.53004 * 109.47137 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46966 * 174.99860 * 4 3 2 6 6 C 1.52996 * 109.46990 * 54.99894 * 4 3 2 7 7 C 1.50702 * 109.47203 * 175.00121 * 6 4 3 8 8 C 1.38234 * 119.99895 * 269.72772 * 7 6 4 9 9 C 1.38240 * 120.00062 * 180.32314 * 8 7 6 10 10 C 1.38235 * 119.99708 * 359.94741 * 9 8 7 11 11 C 1.38234 * 120.00204 * 0.02562 * 10 9 8 12 12 C 1.38230 * 119.99885 * 0.02562 * 11 10 9 13 13 N 1.46497 * 109.46954 * 294.99828 * 4 3 2 14 14 S 1.65597 * 120.00005 * 265.00019 * 13 4 3 15 15 O 1.42100 * 104.27619 * 181.07128 * 14 13 4 16 16 O 1.42101 * 104.27789 * 308.92811 * 14 13 4 17 17 C 1.81394 * 104.45110 * 65.00117 * 14 13 4 18 18 C 1.52997 * 109.47161 * 180.02562 * 17 14 13 19 19 C 1.53006 * 109.47094 * 180.02562 * 18 17 14 20 20 C 1.50695 * 109.47199 * 179.97438 * 19 18 17 21 21 H 1.08008 * 120.00032 * 359.97438 * 20 19 18 22 22 C 1.37883 * 120.00284 * 179.97438 * 20 19 18 23 23 N 1.31507 * 119.99658 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00089 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46996 * 60.00066 * 24 22 20 26 26 H 1.48503 * 109.47096 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47592 * 300.00289 * 24 22 20 28 28 H 1.09002 * 109.46381 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46937 * 300.00103 * 1 2 3 30 30 H 1.09000 * 109.46733 * 60.00392 * 1 2 3 31 31 H 1.08996 * 109.47592 * 59.99842 * 3 2 1 32 32 H 1.09004 * 109.46817 * 299.99845 * 3 2 1 33 33 H 1.09003 * 109.47252 * 55.00299 * 6 4 3 34 34 H 1.09001 * 109.47630 * 295.00353 * 6 4 3 35 35 H 1.08001 * 120.00279 * 0.27436 * 8 7 6 36 36 H 1.07997 * 119.99852 * 179.97438 * 9 8 7 37 37 H 1.08000 * 119.99766 * 180.02562 * 10 9 8 38 38 H 1.07992 * 119.99701 * 179.97438 * 11 10 9 39 39 H 1.08000 * 120.00356 * 179.97438 * 12 11 10 40 40 H 0.97005 * 119.99637 * 85.00027 * 13 4 3 41 41 H 1.08998 * 109.47267 * 300.00302 * 17 14 13 42 42 H 1.09006 * 109.47252 * 60.00158 * 17 14 13 43 43 H 1.09000 * 109.47117 * 299.99737 * 18 17 14 44 44 H 1.08998 * 109.47553 * 60.00128 * 18 17 14 45 45 H 1.09000 * 109.46806 * 299.99784 * 19 18 17 46 46 H 1.08996 * 109.47236 * 60.00045 * 19 18 17 47 47 H 0.96996 * 119.99879 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9784 2.1766 -0.0902 6 6 3.9781 0.3199 -1.1826 7 6 5.4832 0.3014 -1.2557 8 6 6.1504 1.2514 -2.0062 9 6 7.5308 1.2304 -2.0787 10 6 8.2438 0.2600 -1.3999 11 6 7.5766 -0.6896 -0.6489 12 6 6.1963 -0.6692 -0.5773 13 7 3.9767 0.5641 1.2509 14 16 4.4473 1.5122 2.5243 15 8 4.8241 0.5838 3.5320 16 8 5.3961 2.4084 1.9622 17 6 2.9416 2.4005 3.0081 18 6 3.2503 3.3216 4.1901 19 6 1.9801 4.0704 4.5986 20 6 2.2840 4.9772 5.7632 21 1 3.2832 5.0153 6.1715 22 6 1.2866 5.7582 6.3075 23 7 0.0699 5.7114 5.8106 24 14 1.6632 6.8816 7.7516 25 1 2.7099 7.8589 7.3585 26 1 0.4306 7.6094 8.1471 27 1 2.1486 6.0703 8.8966 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.5745 0.7336 -2.1068 34 1 3.6084 -0.6966 -1.0477 35 1 5.5933 2.0095 -2.5365 36 1 8.0520 1.9724 -2.6654 37 1 9.3222 0.2439 -1.4562 38 1 8.1338 -1.4479 -0.1190 39 1 5.6750 -1.4114 0.0090 40 1 3.9931 -0.4023 1.3335 41 1 2.5850 2.9958 2.1675 42 1 2.1734 1.6831 3.2970 43 1 3.6071 2.7266 5.0308 44 1 4.0183 4.0390 3.9008 45 1 1.6229 4.6653 3.7580 46 1 1.2125 3.3528 4.8880 47 1 -0.6317 6.2611 6.1933 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353497491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:23 Heat of formation + Delta-G solvation = -138.568765 kcal Electronic energy + Delta-G solvation = -28068.982390 eV Core-core repulsion = 24149.212453 eV Total energy + Delta-G solvation = -3919.769937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.37480 -39.07051 -38.17699 -37.06788 -36.68527 -36.49069 -34.19000 -33.05243 -31.69554 -30.44236 -29.67879 -27.69801 -26.48788 -25.58891 -23.41427 -23.00499 -22.34433 -21.74006 -20.42647 -18.83122 -18.55139 -17.84829 -17.52721 -17.18716 -16.98116 -16.70668 -16.49385 -16.41505 -16.01085 -15.80760 -15.66900 -15.41794 -14.51935 -14.25747 -14.16055 -14.13856 -13.97887 -13.64057 -13.51993 -13.30069 -13.22128 -13.14478 -13.00858 -12.96552 -12.74219 -12.65557 -12.60602 -12.39008 -12.15385 -12.00142 -11.81267 -11.76354 -11.73204 -11.39156 -11.12796 -10.57759 -10.55496 -10.39886 -9.73318 -9.49993 -8.23462 -6.34282 -0.74801 0.52843 0.58320 1.39795 1.42120 1.50045 1.76877 2.39272 2.74523 2.89000 2.93617 3.10145 3.21256 3.66242 3.74521 3.86760 3.93879 4.03167 4.20101 4.26648 4.29961 4.32912 4.36538 4.41782 4.53150 4.58384 4.63262 4.65748 4.72433 4.73674 4.81159 4.93773 4.95866 5.01587 5.05932 5.12809 5.25576 5.32314 5.44002 5.61809 5.64245 5.69569 5.78273 5.79612 6.13486 6.19107 6.21880 6.26295 6.80765 7.34948 8.87799 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.002893 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.750380 B = 9676.863356 C =10893.091241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.392 6.392 3 C 0.029 3.971 4 C 0.153 3.847 5 H 0.108 0.892 6 C -0.069 4.069 7 C -0.089 4.089 8 C -0.128 4.128 9 C -0.131 4.131 10 C -0.139 4.139 11 C -0.138 4.138 12 C -0.129 4.129 13 N -1.096 6.096 14 S 2.623 3.377 15 O -0.994 6.994 16 O -0.983 6.983 17 C -0.612 4.612 18 C -0.106 4.106 19 C 0.034 3.966 20 C -0.555 4.555 21 H 0.059 0.941 22 C 0.005 3.995 23 N -0.929 5.929 24 Si 0.961 3.039 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.268 1.268 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.425 0.575 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.005 0.995 46 H 0.002 0.998 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.358 -13.481 -20.322 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.311 6.311 3 C -0.049 4.049 4 C 0.046 3.954 5 H 0.126 0.874 6 C -0.107 4.107 7 C -0.089 4.089 8 C -0.146 4.146 9 C -0.149 4.149 10 C -0.157 4.157 11 C -0.156 4.156 12 C -0.147 4.147 13 N -0.857 5.857 14 S 2.718 3.282 15 O -0.985 6.985 16 O -0.973 6.973 17 C -0.743 4.743 18 C -0.145 4.145 19 C -0.004 4.004 20 C -0.593 4.593 21 H 0.077 0.923 22 C -0.194 4.194 23 N -0.568 5.568 24 Si 0.786 3.214 25 H -0.192 1.192 26 H -0.205 1.205 27 H -0.193 1.193 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.262 0.738 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.024 0.976 46 H 0.020 0.980 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.187 -13.365 -19.975 25.085 hybrid contribution -0.916 0.615 0.986 1.479 sum 6.271 -12.750 -18.989 23.716 Atomic orbital electron populations 1.22900 0.80226 1.03611 1.00550 1.87835 1.20449 1.27304 1.95561 1.23396 0.93084 0.85869 1.02551 1.21127 0.92086 0.98318 0.83911 0.87429 1.20743 0.90082 1.02149 0.97763 1.20057 0.96401 0.95425 0.97009 1.21382 0.94867 0.98832 0.99553 1.21452 0.94714 0.98909 0.99863 1.21431 1.00813 0.95630 0.97862 1.21445 0.95007 0.99694 0.99475 1.21305 0.94479 0.99390 0.99572 1.55301 1.84445 1.19913 1.26016 1.04395 0.76585 0.74153 0.73078 1.93527 1.82592 1.62187 1.60151 1.93549 1.58600 1.67644 1.77524 1.30657 1.21699 1.12890 1.09011 1.21312 1.00818 0.97430 0.94923 1.18931 0.92182 0.94088 0.95218 1.21718 0.96340 1.24507 1.16717 0.92274 1.25905 0.94814 0.98587 1.00063 1.70050 1.02250 1.41391 1.43147 0.85558 0.77781 0.78838 0.79271 1.19195 1.20544 1.19339 0.88616 0.94511 0.92787 0.92681 0.89497 0.87532 0.88842 0.84253 0.84548 0.84835 0.85123 0.85394 0.73811 0.83554 0.83833 0.91889 0.91479 0.97627 0.97972 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.39 -6.61 9.87 -148.98 -1.47 -8.08 16 3 C 0.03 0.46 5.76 71.98 0.41 0.87 16 4 C 0.15 2.63 2.59 44.99 0.12 2.74 16 5 H 0.11 1.90 7.48 -2.39 -0.02 1.88 16 6 C -0.07 -1.00 4.67 29.85 0.14 -0.86 16 7 C -0.09 -1.69 4.95 -19.87 -0.10 -1.79 16 8 C -0.13 -2.40 9.70 22.27 0.22 -2.19 16 9 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 10 C -0.14 -2.74 10.05 22.27 0.22 -2.52 16 11 C -0.14 -2.84 10.05 22.27 0.22 -2.62 16 12 C -0.13 -2.64 9.31 22.27 0.21 -2.43 16 13 N -1.10 -23.04 4.69 -169.40 -0.79 -23.84 16 14 S 2.62 77.36 5.44 -56.49 -0.31 77.06 16 15 O -0.99 -35.76 18.08 -127.65 -2.31 -38.06 16 16 O -0.98 -34.37 17.39 -127.65 -2.22 -36.59 16 17 C -0.61 -18.47 5.11 71.98 0.37 -18.10 16 18 C -0.11 -4.31 5.16 30.60 0.16 -4.16 16 19 C 0.03 1.74 4.97 29.85 0.15 1.89 16 20 C -0.55 -31.52 9.11 25.60 0.23 -31.29 16 21 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 22 C 0.00 0.27 5.46 84.66 0.46 0.73 16 23 N -0.93 -55.22 13.29 21.45 0.28 -54.93 16 24 Si 0.96 44.02 29.54 68.60 2.03 46.04 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.94 5.73 -2.39 -0.01 0.93 16 32 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.11 1.10 8.08 -2.39 -0.02 1.08 16 34 H 0.09 1.30 7.67 -2.39 -0.02 1.28 16 35 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 36 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.13 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.13 2.23 7.93 -2.91 -0.02 2.21 16 40 H 0.43 7.78 8.67 -96.74 -0.84 6.94 16 41 H 0.15 3.74 6.88 -2.39 -0.02 3.72 16 42 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 43 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.01 0.28 8.14 -2.39 -0.02 0.27 16 46 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 47 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -76.41 401.55 -0.39 -76.80 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.11 Total: 22.02 kcal Atomic # 6 Polarization: -64.71 SS G_CDS: 4.28 Total: -60.42 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -0.51 Total: -78.77 kcal Atomic # 8 Polarization: -76.74 SS G_CDS: -6.00 Total: -82.74 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 77.36 SS G_CDS: -0.31 Total: 77.06 kcal Total: -76.41 -0.39 -76.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353497491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.767 kcal (2) G-P(sol) polarization free energy of solvation -76.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds