Wall clock time and date at job start Sat Apr 11 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35518 * 116.99927 * 2 1 4 4 C 1.39418 * 120.51000 * 180.02562 * 3 2 1 5 5 C 1.38195 * 118.34779 * 180.02562 * 4 3 2 6 6 N 1.32517 * 119.17586 * 0.02562 * 5 4 3 7 7 C 1.31751 * 120.97060 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.09877 * 180.02562 * 7 6 5 9 9 N 1.46494 * 109.47279 * 89.99715 * 8 7 6 10 10 C 1.34781 * 120.00263 * 180.02562 * 9 8 7 11 11 O 1.21275 * 119.99715 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00103 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.46629 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.47442 * 54.06116 * 13 12 10 15 15 C 1.50700 * 109.47616 * 294.05384 * 13 12 10 16 16 H 1.08004 * 119.99702 * 330.31700 * 15 13 12 17 17 C 1.37871 * 120.00278 * 150.30886 * 15 13 12 18 18 N 1.31520 * 119.99865 * 6.29736 * 17 15 13 19 19 Si 1.86797 * 120.00267 * 186.57175 * 17 15 13 20 20 H 1.48497 * 109.47344 * 179.72566 * 19 17 15 21 21 H 1.48505 * 109.46982 * 299.72655 * 19 17 15 22 22 H 1.48496 * 109.47263 * 59.72097 * 19 17 15 23 23 C 1.50703 * 109.46564 * 174.05717 * 13 12 10 24 24 C 1.38234 * 120.00036 * 64.22663 * 23 13 12 25 25 C 1.38241 * 119.99515 * 179.78899 * 24 23 13 26 26 C 1.38231 * 120.00410 * 0.43243 * 25 24 23 27 27 C 1.38237 * 119.99893 * 359.81688 * 26 25 24 28 28 C 1.38237 * 119.99806 * 244.49330 * 23 13 12 29 29 N 1.31792 * 121.81258 * 0.27876 * 7 6 5 30 30 H 1.09001 * 109.46462 * 299.99830 * 1 2 3 31 31 H 1.08993 * 109.47215 * 59.99772 * 1 2 3 32 32 H 1.08997 * 109.46417 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.83101 * 0.02562 * 4 3 2 34 34 H 1.07999 * 120.41027 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.46651 * 329.99992 * 8 7 6 36 36 H 1.09000 * 109.47215 * 210.00164 * 8 7 6 37 37 H 0.96999 * 120.00038 * 0.02562 * 9 8 7 38 38 H 1.09001 * 109.47147 * 60.00090 * 12 10 9 39 39 H 1.09000 * 109.46973 * 300.00105 * 12 10 9 40 40 H 0.96993 * 119.99759 * 355.06547 * 18 17 15 41 41 H 1.07994 * 120.00247 * 359.97438 * 24 23 13 42 42 H 1.08002 * 119.99674 * 180.27316 * 25 24 23 43 43 H 1.07998 * 120.00285 * 179.83231 * 26 25 24 44 44 H 1.08003 * 120.00306 * 179.97438 * 27 26 25 45 45 H 1.08006 * 120.00144 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4358 1.2929 -0.0005 5 6 4.0163 2.5470 0.0000 6 7 3.2376 3.6192 0.0016 7 6 1.9251 3.5040 0.0021 8 6 1.0799 4.7517 0.0032 9 7 0.8055 5.1570 -1.3775 10 6 0.0626 6.2545 -1.6228 11 8 -0.3790 6.9063 -0.7004 12 6 -0.2202 6.6711 -3.0432 13 6 -1.0782 7.9378 -3.0419 14 1 -0.5926 8.7050 -2.4387 15 6 -2.4337 7.6260 -2.4618 16 1 -2.8511 6.6354 -2.5671 17 6 -3.1408 8.6050 -1.7968 18 7 -2.6913 9.8408 -1.7749 19 14 -4.7333 8.1748 -0.9203 20 1 -5.2919 9.3936 -0.2819 21 1 -5.7096 7.6387 -1.9026 22 1 -4.4645 7.1499 0.1200 23 6 -1.2391 8.4368 -4.4547 24 6 -1.9109 7.6683 -5.3869 25 6 -2.0623 8.1281 -6.6818 26 6 -1.5342 9.3523 -7.0468 27 6 -0.8580 10.1185 -6.1159 28 6 -0.7102 9.6607 -4.8199 29 7 1.3310 2.3276 0.0065 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 4.0451 0.4011 -0.0014 34 1 5.0912 2.6519 -0.0008 35 1 1.6132 5.5513 0.5174 36 1 0.1395 4.5531 0.5174 37 1 1.1584 4.6354 -2.1153 38 1 -0.7541 5.8715 -3.5569 39 1 0.7201 6.8691 -3.5578 40 1 -1.8279 10.0498 -2.1644 41 1 -2.3200 6.7100 -5.1028 42 1 -2.5909 7.5296 -7.4090 43 1 -1.6501 9.7103 -8.0591 44 1 -0.4450 11.0749 -6.4011 45 1 -0.1820 10.2594 -4.0926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424922296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:46 Heat of formation + Delta-G solvation = 0.309209 kcal Electronic energy + Delta-G solvation = -28475.495588 eV Core-core repulsion = 24458.596651 eV Total energy + Delta-G solvation = -4016.898936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58884 -39.25272 -38.81129 -38.23227 -34.93751 -34.10181 -33.47802 -32.09952 -31.28081 -30.09676 -29.21655 -28.03347 -27.16522 -24.85848 -24.08096 -23.15454 -22.52967 -21.65387 -20.31563 -19.57258 -18.82074 -18.17639 -16.94692 -16.61917 -16.35231 -15.96293 -15.82143 -15.59636 -15.25374 -14.83762 -14.57345 -14.27109 -14.21582 -13.98561 -13.62980 -13.29192 -13.16550 -12.84149 -12.59218 -12.38539 -12.30650 -12.14506 -11.99491 -11.83406 -11.43681 -11.08511 -10.90974 -10.69974 -10.68529 -10.41797 -10.12505 -10.02202 -9.72452 -9.64093 -9.52203 -9.03548 -8.71044 -8.58988 -8.24302 -8.12566 -7.61946 -6.20859 -3.88529 0.48674 0.82118 2.20421 2.26178 2.52674 3.19697 3.44891 3.46884 3.51881 3.57966 3.72973 3.76656 3.93653 4.45792 4.62738 4.68885 4.70390 4.88417 4.97211 4.98568 5.01497 5.29664 5.41801 5.55667 5.60487 5.61252 5.64699 5.77398 5.81556 5.94230 6.01374 6.09538 6.18262 6.32892 6.43521 6.48696 6.68500 6.73248 6.75792 6.80374 6.94409 7.21800 7.23881 7.39498 7.73737 7.75875 7.87144 7.94995 8.24699 8.53058 8.95934 9.00910 9.80802 11.19572 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011270 B = 0.002771 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.811724 B =10102.716532 C =11113.662364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.302 6.302 3 C 0.361 3.639 4 C -0.246 4.246 5 C 0.174 3.826 6 N -0.525 5.525 7 C 0.350 3.650 8 C 0.192 3.808 9 N -0.740 5.740 10 C 0.518 3.482 11 O -0.495 6.495 12 C -0.115 4.115 13 C 0.072 3.928 14 H 0.052 0.948 15 C -0.568 4.568 16 H 0.045 0.955 17 C 0.033 3.967 18 N -0.905 5.905 19 Si 1.062 2.938 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.288 1.288 23 C -0.030 4.030 24 C -0.108 4.108 25 C -0.130 4.130 26 C -0.153 4.153 27 C -0.124 4.124 28 C -0.130 4.130 29 N -0.558 5.558 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.178 0.822 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.393 0.607 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.270 0.730 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.992 -17.148 -0.924 20.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.206 6.206 3 C 0.174 3.826 4 C -0.269 4.269 5 C 0.011 3.989 6 N -0.244 5.244 7 C 0.082 3.918 8 C 0.066 3.934 9 N -0.397 5.397 10 C 0.305 3.695 11 O -0.366 6.366 12 C -0.155 4.155 13 C 0.053 3.947 14 H 0.070 0.930 15 C -0.606 4.606 16 H 0.063 0.937 17 C -0.173 4.173 18 N -0.541 5.541 19 Si 0.892 3.108 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.215 1.215 23 C -0.031 4.031 24 C -0.126 4.126 25 C -0.148 4.148 26 C -0.171 4.171 27 C -0.143 4.143 28 C -0.148 4.148 29 N -0.289 5.289 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.171 0.829 34 H 0.195 0.805 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.226 0.774 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.894 -15.496 0.662 18.397 hybrid contribution 1.624 -1.831 -1.234 2.741 sum 11.518 -17.327 -0.572 20.813 Atomic orbital electron populations 1.23016 0.76125 1.03516 1.03307 1.86237 1.23833 1.23827 1.86683 1.20173 0.89669 0.85024 0.87776 1.22001 0.92844 1.01418 1.10608 1.23155 1.00911 0.86413 0.88411 1.68352 1.05706 1.33939 1.16411 1.22989 0.88000 0.91756 0.89040 1.19830 0.97629 0.89488 0.86414 1.46031 1.56890 1.30498 1.06295 1.20869 0.76741 0.79065 0.92821 1.90761 1.47682 1.52185 1.45939 1.21682 1.00375 1.01656 0.91812 1.17873 0.96425 0.91932 0.88475 0.92990 1.21524 1.02447 0.99070 1.37535 0.93659 1.25570 1.03505 0.93163 0.95061 1.70759 1.20212 1.18647 1.44453 0.83645 0.75172 0.75597 0.76415 1.20962 1.21809 1.21492 1.20821 0.92225 0.93317 0.96746 1.20917 0.98979 1.00371 0.92370 1.21009 1.00735 0.96483 0.96566 1.20819 1.01680 0.95907 0.98730 1.20969 1.00224 0.99038 0.94022 1.21076 1.01226 0.96967 0.95520 1.67991 1.41776 0.98737 1.20366 0.91703 0.91617 0.88099 0.82868 0.80536 0.88843 0.89057 0.77438 0.90237 0.91538 0.91850 0.86758 0.87486 0.87608 0.87460 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.41 101.05 1.05 1.34 16 2 O -0.30 -3.00 10.49 -18.25 -0.19 -3.19 16 3 C 0.36 3.92 7.53 -16.69 -0.13 3.79 16 4 C -0.25 -2.05 10.13 -39.16 -0.40 -2.45 16 5 C 0.17 1.47 11.29 -17.27 -0.20 1.28 16 6 N -0.53 -6.21 10.33 -10.79 -0.11 -6.32 16 7 C 0.35 4.52 7.01 -157.23 -1.10 3.42 16 8 C 0.19 2.80 6.10 -5.19 -0.03 2.77 16 9 N -0.74 -11.48 5.55 -61.47 -0.34 -11.82 16 10 C 0.52 10.34 7.58 -10.98 -0.08 10.26 16 11 O -0.49 -12.27 15.01 5.56 0.08 -12.19 16 12 C -0.11 -2.23 4.94 -27.88 -0.14 -2.37 16 13 C 0.07 1.72 1.31 -92.92 -0.12 1.60 16 14 H 0.05 1.40 6.24 -51.93 -0.32 1.07 16 15 C -0.57 -15.42 6.40 -34.44 -0.22 -15.64 16 16 H 0.05 1.23 7.82 -52.48 -0.41 0.82 16 17 C 0.03 0.94 5.45 -17.82 -0.10 0.84 16 18 N -0.91 -27.64 13.63 55.43 0.76 -26.88 16 19 Si 1.06 26.32 29.91 -169.99 -5.08 21.24 16 20 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 C -0.03 -0.67 4.77 -104.62 -0.50 -1.17 16 24 C -0.11 -2.21 8.88 -39.58 -0.35 -2.57 16 25 C -0.13 -2.35 10.05 -39.58 -0.40 -2.74 16 26 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 27 C -0.12 -2.29 10.05 -39.58 -0.40 -2.69 16 28 C -0.13 -2.72 9.67 -39.58 -0.38 -3.10 16 29 N -0.56 -7.03 9.28 -10.78 -0.10 -7.13 16 30 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 31 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.39 5.18 8.46 -40.82 -0.35 4.84 16 38 H 0.08 1.44 7.86 -51.93 -0.41 1.04 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.27 8.15 6.68 -40.82 -0.27 7.87 16 41 H 0.11 2.28 7.80 -52.49 -0.41 1.87 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 45 H 0.11 2.29 7.95 -52.48 -0.42 1.87 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -34.78 389.05 -9.04 -43.83 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.03 Total: 7.12 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -3.89 Total: -10.51 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.20 Total: -52.15 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.11 Total: -15.38 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -5.08 Total: 21.24 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.78 -9.04 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424922296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.137 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds