Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35518 * 116.99927 * 2 1 4 4 C 1.39418 * 120.51000 * 180.02562 * 3 2 1 5 5 C 1.38195 * 118.34779 * 180.02562 * 4 3 2 6 6 N 1.32517 * 119.17586 * 0.02562 * 5 4 3 7 7 C 1.31751 * 120.97060 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.09877 * 180.02562 * 7 6 5 9 9 N 1.46494 * 109.47279 * 89.99715 * 8 7 6 10 10 C 1.34781 * 120.00263 * 180.02562 * 9 8 7 11 11 O 1.21275 * 119.99715 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00103 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.46629 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.47442 * 54.06116 * 13 12 10 15 15 C 1.50700 * 109.47616 * 294.05384 * 13 12 10 16 16 H 1.08004 * 119.99702 * 330.31700 * 15 13 12 17 17 C 1.37871 * 120.00278 * 150.30886 * 15 13 12 18 18 N 1.31520 * 119.99865 * 6.29736 * 17 15 13 19 19 Si 1.86797 * 120.00267 * 186.57175 * 17 15 13 20 20 H 1.48497 * 109.47344 * 179.72566 * 19 17 15 21 21 H 1.48505 * 109.46982 * 299.72655 * 19 17 15 22 22 H 1.48496 * 109.47263 * 59.72097 * 19 17 15 23 23 C 1.50703 * 109.46564 * 174.05717 * 13 12 10 24 24 C 1.38234 * 120.00036 * 64.22663 * 23 13 12 25 25 C 1.38241 * 119.99515 * 179.78899 * 24 23 13 26 26 C 1.38231 * 120.00410 * 0.43243 * 25 24 23 27 27 C 1.38237 * 119.99893 * 359.81688 * 26 25 24 28 28 C 1.38237 * 119.99806 * 244.49330 * 23 13 12 29 29 N 1.31792 * 121.81258 * 0.27876 * 7 6 5 30 30 H 1.09001 * 109.46462 * 299.99830 * 1 2 3 31 31 H 1.08993 * 109.47215 * 59.99772 * 1 2 3 32 32 H 1.08997 * 109.46417 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.83101 * 0.02562 * 4 3 2 34 34 H 1.07999 * 120.41027 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.46651 * 329.99992 * 8 7 6 36 36 H 1.09000 * 109.47215 * 210.00164 * 8 7 6 37 37 H 0.96999 * 120.00038 * 0.02562 * 9 8 7 38 38 H 1.09001 * 109.47147 * 60.00090 * 12 10 9 39 39 H 1.09000 * 109.46973 * 300.00105 * 12 10 9 40 40 H 0.96993 * 119.99759 * 355.06547 * 18 17 15 41 41 H 1.07994 * 120.00247 * 359.97438 * 24 23 13 42 42 H 1.08002 * 119.99674 * 180.27316 * 25 24 23 43 43 H 1.07998 * 120.00285 * 179.83231 * 26 25 24 44 44 H 1.08003 * 120.00306 * 179.97438 * 27 26 25 45 45 H 1.08006 * 120.00144 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4358 1.2929 -0.0005 5 6 4.0163 2.5470 0.0000 6 7 3.2376 3.6192 0.0016 7 6 1.9251 3.5040 0.0021 8 6 1.0799 4.7517 0.0032 9 7 0.8055 5.1570 -1.3775 10 6 0.0626 6.2545 -1.6228 11 8 -0.3790 6.9063 -0.7004 12 6 -0.2202 6.6711 -3.0432 13 6 -1.0782 7.9378 -3.0419 14 1 -0.5926 8.7050 -2.4387 15 6 -2.4337 7.6260 -2.4618 16 1 -2.8511 6.6354 -2.5671 17 6 -3.1408 8.6050 -1.7968 18 7 -2.6913 9.8408 -1.7749 19 14 -4.7333 8.1748 -0.9203 20 1 -5.2919 9.3936 -0.2819 21 1 -5.7096 7.6387 -1.9026 22 1 -4.4645 7.1499 0.1200 23 6 -1.2391 8.4368 -4.4547 24 6 -1.9109 7.6683 -5.3869 25 6 -2.0623 8.1281 -6.6818 26 6 -1.5342 9.3523 -7.0468 27 6 -0.8580 10.1185 -6.1159 28 6 -0.7102 9.6607 -4.8199 29 7 1.3310 2.3276 0.0065 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 4.0451 0.4011 -0.0014 34 1 5.0912 2.6519 -0.0008 35 1 1.6132 5.5513 0.5174 36 1 0.1395 4.5531 0.5174 37 1 1.1584 4.6354 -2.1153 38 1 -0.7541 5.8715 -3.5569 39 1 0.7201 6.8691 -3.5578 40 1 -1.8279 10.0498 -2.1644 41 1 -2.3200 6.7100 -5.1028 42 1 -2.5909 7.5296 -7.4090 43 1 -1.6501 9.7103 -8.0591 44 1 -0.4450 11.0749 -6.4011 45 1 -0.1820 10.2594 -4.0926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424922296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = -24.168720 kcal Electronic energy + Delta-G solvation = -28476.557030 eV Core-core repulsion = 24458.596651 eV Total energy + Delta-G solvation = -4017.960379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.41789 -40.79685 -39.86657 -39.54357 -36.41341 -35.77762 -34.37127 -33.38975 -32.90836 -31.59988 -30.67218 -28.97692 -28.22029 -26.69129 -24.83282 -24.72621 -23.70436 -23.17740 -21.87962 -21.21803 -19.66029 -19.09628 -18.73509 -18.00731 -17.46930 -17.29124 -16.94209 -16.52239 -16.50152 -16.00577 -15.72794 -15.63994 -15.61002 -15.36939 -15.11904 -14.75410 -14.59300 -14.09664 -14.04648 -13.97991 -13.79683 -13.45332 -13.13641 -12.99246 -12.74597 -12.67763 -12.58183 -12.07429 -11.94384 -11.89171 -11.71319 -11.53787 -11.47141 -10.83643 -10.62054 -10.56830 -10.34990 -10.16954 -10.12741 -9.63366 -9.26441 -8.43177 -6.09070 -0.33638 0.05087 0.68554 0.74686 1.49011 1.60235 1.75144 1.81348 1.84128 2.09117 2.55747 2.62648 2.81117 3.00437 3.11485 3.40296 3.74718 3.93618 4.06311 4.13837 4.21503 4.28682 4.29104 4.30501 4.31828 4.35086 4.43665 4.46285 4.49933 4.58067 4.64260 4.69642 4.83194 4.87286 5.08707 5.15348 5.23791 5.35504 5.41308 5.44356 5.70348 5.75286 5.83091 5.95738 6.00217 6.25155 6.31827 6.40512 6.56186 6.80169 6.91458 7.41688 7.66633 8.97364 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011270 B = 0.002771 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.811724 B =10102.716532 C =11113.662364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.340 3.660 4 C -0.226 4.226 5 C 0.174 3.826 6 N -0.542 5.542 7 C 0.338 3.662 8 C 0.196 3.804 9 N -0.718 5.718 10 C 0.519 3.481 11 O -0.553 6.553 12 C -0.109 4.109 13 C 0.074 3.926 14 H 0.009 0.991 15 C -0.558 4.558 16 H 0.039 0.961 17 C -0.023 4.023 18 N -0.941 5.941 19 Si 1.098 2.902 20 H -0.289 1.289 21 H -0.268 1.268 22 H -0.285 1.285 23 C -0.054 4.054 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.145 4.145 27 C -0.125 4.125 28 C -0.153 4.153 29 N -0.577 5.577 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.131 0.869 33 H 0.188 0.812 34 H 0.220 0.780 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.407 0.593 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.258 0.742 41 H 0.114 0.886 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.135 0.865 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.075 -19.527 -3.291 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.208 6.208 3 C 0.154 3.846 4 C -0.249 4.249 5 C 0.013 3.987 6 N -0.261 5.261 7 C 0.069 3.931 8 C 0.071 3.929 9 N -0.374 5.374 10 C 0.306 3.694 11 O -0.429 6.429 12 C -0.149 4.149 13 C 0.054 3.946 14 H 0.028 0.972 15 C -0.596 4.596 16 H 0.058 0.942 17 C -0.222 4.222 18 N -0.580 5.580 19 Si 0.923 3.077 20 H -0.215 1.215 21 H -0.193 1.193 22 H -0.211 1.211 23 C -0.055 4.055 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.163 4.163 27 C -0.143 4.143 28 C -0.171 4.171 29 N -0.308 5.308 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.149 0.851 33 H 0.206 0.794 34 H 0.236 0.764 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.243 0.757 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.153 0.847 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.015 -17.950 -1.743 21.132 hybrid contribution 1.435 -1.221 -0.571 1.969 sum 12.449 -19.171 -2.314 22.975 Atomic orbital electron populations 1.23144 0.75426 1.05200 1.02338 1.86245 1.24554 1.23316 1.86690 1.20583 0.90829 0.84744 0.88451 1.22424 0.91927 1.02709 1.07836 1.23872 1.02383 0.85519 0.86944 1.68314 1.05270 1.35759 1.16802 1.22399 0.88369 0.91003 0.91300 1.19685 0.97406 0.90603 0.85248 1.45727 1.55107 1.29005 1.07557 1.20974 0.76494 0.79449 0.92438 1.90742 1.50448 1.54301 1.47396 1.21577 1.01134 1.00155 0.92029 1.17700 0.95101 0.92594 0.89155 0.97226 1.21790 1.03380 0.98163 1.36303 0.94238 1.26713 1.06288 0.93152 0.96048 1.70849 1.20373 1.19799 1.46949 0.83177 0.73069 0.75291 0.76161 1.21460 1.19316 1.21142 1.20608 0.94402 0.94402 0.96092 1.21007 0.99300 1.00445 0.93409 1.21404 0.99902 0.97003 0.95961 1.21304 0.99630 0.95096 1.00226 1.21304 0.99830 1.00266 0.92891 1.21140 1.02287 0.96786 0.96892 1.67856 1.42763 0.99197 1.20958 0.92632 0.92615 0.85115 0.79443 0.76404 0.89642 0.90545 0.75726 0.88570 0.88863 0.93126 0.86835 0.83987 0.83574 0.84712 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.41 113.37 1.18 1.69 16 2 O -0.30 -5.57 10.49 -88.21 -0.93 -6.49 16 3 C 0.34 6.89 7.53 84.83 0.64 7.53 16 4 C -0.23 -3.10 10.13 22.54 0.23 -2.87 16 5 C 0.17 2.45 11.29 84.58 0.96 3.40 16 6 N -0.54 -12.17 10.33 -188.06 -1.94 -14.11 16 7 C 0.34 8.71 7.01 138.76 0.97 9.68 16 8 C 0.20 5.99 6.10 85.64 0.52 6.51 16 9 N -0.72 -22.77 5.55 -466.79 -2.59 -25.36 16 10 C 0.52 21.52 7.58 87.66 0.66 22.18 16 11 O -0.55 -29.15 15.01 -3.01 -0.05 -29.20 16 12 C -0.11 -4.31 4.94 29.85 0.15 -4.16 16 13 C 0.07 3.68 1.31 -12.29 -0.02 3.66 16 14 H 0.01 0.55 6.24 -2.39 -0.01 0.54 16 15 C -0.56 -31.40 6.40 25.60 0.16 -31.24 16 16 H 0.04 2.20 7.82 -2.91 -0.02 2.18 16 17 C -0.02 -1.40 5.45 84.65 0.46 -0.94 16 18 N -0.94 -60.41 13.63 21.45 0.29 -60.12 16 19 Si 1.10 54.54 29.91 68.60 2.05 56.59 16 20 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 23 C -0.05 -2.46 4.77 -19.86 -0.09 -2.55 16 24 C -0.12 -4.93 8.88 22.27 0.20 -4.73 16 25 C -0.12 -4.12 10.05 22.27 0.22 -3.89 16 26 C -0.14 -4.51 10.05 22.27 0.22 -4.29 16 27 C -0.13 -4.38 10.05 22.27 0.22 -4.15 16 28 C -0.15 -6.53 9.67 22.27 0.22 -6.31 16 29 N -0.58 -14.38 9.28 -300.69 -2.79 -17.17 16 30 H 0.05 0.94 8.12 -2.39 -0.02 0.92 16 31 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 32 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 34 H 0.22 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.41 10.59 8.46 -92.71 -0.78 9.81 16 38 H 0.10 3.47 7.86 -2.39 -0.02 3.45 16 39 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.26 16.66 6.68 -92.71 -0.62 16.04 16 41 H 0.11 4.43 7.80 -2.91 -0.02 4.41 16 42 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 44 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 45 H 0.10 4.25 7.95 -2.91 -0.02 4.22 16 Total: -1.00 -80.78 389.05 1.34 -79.45 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.38 Total: 26.89 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 6.91 Total: -10.48 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -7.03 Total: -116.75 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -0.97 Total: -35.69 kcal Atomic # 14 Polarization: 54.54 SS G_CDS: 2.05 Total: 56.59 kcal Total: -80.78 1.34 -79.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424922296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.277 kcal (2) G-P(sol) polarization free energy of solvation -80.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds